BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17860.1
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920711 jgi|Araly1|920711|scaffold_101992.1 867 0.0
> Ahg920711 jgi|Araly1|920711|scaffold_101992.1
Length=631
Score = 867 bits (469), Expect = 0.0
Identities = 565/612 (92%), Gaps = 4/612 (1%)
Strand=Plus/Plus
Query 25 AAAAGAAAACTTCCTACAATGTCATCACTTCTCTATATCTTCCTCCTCTTGGCCGTCTTC 84
|||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 3 AAAAGAAATCTTCCTACAATGTCCTCACTTCTCTATATCTTCCTCCTCTTTGCCGTCTTT 62
Query 85 ATCAGCCACCGTGGAGTCACCACCGAAGCAGCCGTCGAACCAGTTAAGGACATCAATGGA 144
| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 63 ACCAGCCACCGTGGAGCCACCACCGAAGCTGCCGTCGAACCAGTTAAGGACATCAATGGA 122
Query 145 AAATCTCTCCTCACAGGCGT-CAACTACTACATCTTGCCTGTAATTCGCGGCCGTGGAGG 203
||| ||||||| || | || |||||||||||||||||||||| |||||||||| |||||
Sbjct 123 AAACCTCTCCTAAC-GAAGTACAACTACTACATCTTGCCTGTAGTTCGCGGCCGCGGAGG 181
Query 204 CGGACTAACCATGTCAAACTT-AAAGACCGAAACCTGTCCCACAAGTGTGATCCAAGACC 262
|||| |||||||||| ||||| ||| | |||||||||||| | |||||||||||||||||
Sbjct 182 CGGATTAACCATGTCCAACTTCAAA-AACGAAACCTGTCCGAGAAGTGTGATCCAAGACC 240
Query 263 AATTTGAAGTCTCTCAAGGCCTACCGGTTAAATTCTCACCATATGACAAATCAAGAACCA 322
| || ||||||||||||||| |||| ||||||||||||||||||||||||||||| | |
Sbjct 241 AGTTCGAAGTCTCTCAAGGCTTACCAGTTAAATTCTCACCATATGACAAATCAAGTATCG 300
Query 323 TCCCTGTCTCAACTGATGTAAACATCAAATTCTCTCCAACTTCGATCTGGGAATTAGCCA 382
||| ||||||||| ||| ||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 301 TCCGTGTCTCAACCGATCAAAACATCAAGTTCTCTCCAACCTCGATATGGGAATTAGCCA 360
Query 383 ATTTCGACGAGACGACGAAACAATGGTTCATTTCAACTTGTGGCGTTGAAGGGAATCCCG 442
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 361 ATTTCGACGAGAGGACGAGTCAATGGTTCATTTCAACTTGTGGCGTTGAAGGGAATCCGG 420
Query 443 GTCAGAAAACGGTTGATAACTGGTTCAAGATCGACAAATTTGAAAAAGATTACAAGATCA 502
|||||||||| |||| ||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 421 GTCAGAAAACAGTTGGTAACTGGTTTAAGATCGACGAATTTGAAAAAGATTACAAGATCA 480
Query 503 GGTTTTGTCCTACTGTCTGCAATTTCTGCAAAGTCATCTGTAGAGACGTTGGAGTGTTTG 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGTTTTGTCCTACTGTCTGCAATTTCTGCAAAGTCATCTGTAGAGACGTTGGAGTGTTTG 540
Query 563 TGCAAGATGGAAAGAGAAGACTTGCTTTAAGTGATGTTCCACTAAAGGTTATGTTCAAAA 622
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 541 TGCAAGATGGAAAGAGAAGACTTGCTTTAAGTGAGGTTCCATTAAAGGTTATGTTCAAAA 600
Query 623 GAGCATACTAGA 634
|||||||||||
Sbjct 601 AAGCATACTAGA 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27181639821
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5