BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G17880.1

Length=778
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg312752 jgi|Araly1|312752|fgenesh1_pm.C_scaffold_1001532           800    0.0  


> Ahg312752 jgi|Araly1|312752|fgenesh1_pm.C_scaffold_1001532
Length=495

 Score =  800 bits (433),  Expect = 0.0
 Identities = 477/498 (96%), Gaps = 3/498 (1%)
 Strand=Plus/Plus

Query  118  ATGAATAGGGAGAAGTTGATGAAGATGGCTAATACCGTCCGCACTGGCGGAAAGGGTACT  177
            ||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| 
Sbjct  1    ATGAATAGGGAAAAGTTGATGAAGATGGCTAACACTGTCCGCACTGGCGGAAAGGGTACC  60

Query  178  GTCAGAAGAAAGAAGAAGGCTGTGCACAAGACCAATACAACTGATGACAAGAGGCTTCAA  237
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  61   GTCAGAAGAAAGAAGAAGGCTGTGCACAAGACCAATACAACTGATGACAAGAGGCTCCAA  120

Query  238  AGCACTCTTAAGAGAATTGGAGTTAACTCCATTCCCGCTATTGAAGAAGTTAACATCTTT  297
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  121  AGCACTCTTAAGAGAATTGGAGTTAACTCCATTCCAGCAATTGAAGAAGTTAACATCTTT  180

Query  298  AAGGATGATGTTGTTATTCAGTTCATCAACCCTAAGGTTCAAGCTTCAATTGCTGCAAAC  357
            ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  181  AAGGATGATGTTGTTATCCAATTCATCAACCCTAAGGTTCAAGCTTCAATTGCTGCAAAC  240

Query  358  ACATGGGTTGTTAGCGGTTCTCCTCAGACCAAAAAATTGCAAGATATCCTTCCTCAGATC  417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  241  ACATGGGTTGTTAGCGGTTCTCCTCAGACCAAAAAATTGCAAGATATCCTTCCTCAGATT  300

Query  418  ATCAGCCAACTTGGACCAGACAACATGGACAACCTGAAGAAGCTAGCAGAACAGTTCCAG  477
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  301  ATCAGCCAACTTGGACCAGACAACATGGACAACCTGAAGAAGCTAGCAGAGCAGTTCCAG  360

Query  478  AAACAGGCTTCTGGTGAAGGTAATGCCGCCTCAGCAACCATACAAGAAGAGGATGATGAC  537
            |||||| || ||||||||||||| |  |||||||||||||||||||| || |||||||||
Sbjct  361  AAACAGTCTCCTGGTGAAGGTAA-G--GCCTCAGCAACCATACAAGAGGAAGATGATGAC  417

Query  538  GATGTCCCAGAGCTTGTTGGAGAGACATTCGAAACTGCTGCTGAAGAGAAAGCACCAGCT  597
            |||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||
Sbjct  418  GATGTCCCAGAGCTAGTTGGAGAGACATTCGAAGCTGCTGCTGAAGAGAAAGTACCAGCT  477

Query  598  GCTGCTGCTTCTTCTTAG  615
            ||||||||||||||||||
Sbjct  478  GCTGCTGCTTCTTCTTAG  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28706556501


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5