BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17890.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472002 jgi|Araly1|472002|fgenesh2_kg.1__1956__AT1G17890.1 1903 0.0
Ahg926698 jgi|Araly1|926698|scaffold_202259.1 857 0.0
> Ahg472002 jgi|Araly1|472002|fgenesh2_kg.1__1956__AT1G17890.1
Length=1312
Score = 1903 bits (1030), Expect = 0.0
Identities = 1243/1341 (93%), Gaps = 34/1341 (3%)
Strand=Plus/Plus
Query 1 GCGGATATTCAGATCTCCTCCACATTACATTCTCCAAGGAATTTAACCTTTACCTACAAA 60
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1 GCGGATATTCAGATCTCCTCCACCTTACATTCTCCGAGGAATTTAACCTTTACCTACAAA 60
Query 61 TCTAAGCTTCTG-TCGTTGACTTCGAAAACTGATATCTATAAGTCAAAATCCCCATTCTC 119
|||||||||||| ||||||||||||||||||| || |||||||||||| ||||| |||||
Sbjct 61 TCTAAGCTTCTGTTCGTTGACTTCGAAAACTGGTAGCTATAAGTCAAAGTCCCCTTTCTC 120
Query 120 AATCGCTCATCGTCTTGTAGAACTAATTGACTAAACAATGGCGGACAACACAGGATCCGA 179
|||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 121 AATCTCTCATCGTCTTGTAGAACTAATTGACTCGACAATGGCGGACACCACAGGATCCGA 180
Query 180 GATGAAATCAGGTTCGTTTATGTTAGAGAAATCCGCCAAGATCTTTGTCGCTGGACATAG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATGAAATCAGGTTCGTTTATGTTAGAGAAATCCGCCAAGATCTTTGTCGCTGGACATAG 240
Query 240 GGGATTGGTTGGATCTGCCATTGTCCGCAAGCTCCAGGATCAGGGTTTCACCAATTTGGT 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 241 GGGATTGGTTGGATCTGCCATTGTTCGCAAGCTCCAGGATCAGGGTTTCACCAATCTGGT 300
Query 300 CCTTCGAACCCATTCAGAGCTTGATCTCACTAGCCAATCAGATGTTGAATCTTTCTTTGC 359
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 301 CCTTCGAACCCATTCCGAGCTTGATCTCACTAGCCAATCCGATGTTGAATCCTTCTTTGC 360
Query 360 TACAGAGAAACCAGTTTATGTCATCCTAGCTGCTGCTAAAGTCGGTGGGATTCATGCTAA 419
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 361 TACAGAGAAACCAGTTTATGTCATCCTCGCTGCAGCTAAAGTCGGTGGGATTCATGCTAA 420
Query 420 CAACACATACCCAGCTGATTTCATTGGGGTCAATCTCCAAATCCAGACCAATGTGATCCA 479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 CAACACATACCCAGCTGATTTCATTGGTGTCAATCTCCAAATCCAGACCAATGTGATCCA 480
Query 480 CTCTGCTTATACA-CACGGTGTGAAGAAACTCCTCTTCCTTGGTTCATCTTGCATTTACC 538
||||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 CTCTGCTTATA-AGCATGGTGTGAAGAAACTCCTCTTTCTTGGTTCATCTTGCATTTACC 539
Query 539 CCAAATTTGCTCCTCAGCCGATTCCCGAATCTGCGCTTCTTACCGGTCCGCTCGAACCGA 598
||||||| |||||||| |||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 540 CCAAATTCGCTCCTCAACCGATTCCTGAATCTGCGCTTCTTACTGGTCCGCTTGAACCGA 599
Query 599 CAAACGAATGGTATGCGATCGCCAAGATCGC-GGGTATTAAGATGTGTCAAGCTTACCGG 657
| ||||||||||| || || ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 600 CTAACGAATGGTACGCAATTGCCAAGATCGCAGGG-ATTAAGATGTGTCAAGCTTACCGG 658
Query 658 CTTCAGCATCAGTGGGATGCTATCTCCGGTATGCCCACGAATCTGTATGGTCAGAATGAT 717
||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 659 CTTCAGCATCAATGGGATGCCATCTCCGGTATGCCCACGAATCTGTACGGTCAAAATGAT 718
Query 718 AATTTCCACCCGGAGAATTCCCATGTGCTGCCTGCTCTCATGAGGAGGTTTCATGAAGCC 777
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 719 AATTTCCACCCGGAGAATTCTCATGTGCTGCCTGCTCTCATGAGGAGGTTCCATGAAGCT 778
Query 778 AAAGCCAATAATGCTGACGAAGTTGTGGTTTGGGGAAGTGGAAGCCCGTTGAGGGAGTTT 837
|||||||| |||||||| |||||||||||||||||||| |||||||||||| ||||||||
Sbjct 779 AAAGCCAACAATGCTGAAGAAGTTGTGGTTTGGGGAAGCGGAAGCCCGTTGCGGGAGTTT 838
Query 838 TTACATGTCGATGATTTGGCTGATGCTTGTGTTTTCTTGATGGATCAGTACAGCGGATTT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTACATGTCGATGATTTGGCTGATGCTTGTGTTTTCTTGATGGATCAGTACAGCGGATTT 898
Query 898 GAGCATGTGAATGTAGGAAGTGGTGTTGAAGTGACGATCAAAGAATTGGCTGAGTTGGTG 957
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 899 GAGCATGTGAATGTAGGAAGTGGTGTCGAAGTGACGATCAAAGAATTGGCTGAGTTGGTG 958
Query 958 AAAGAAGTTGTTGGGTTTAAAGGAAAGCTTGTTTGGGA-TACCACAAAACCAGACGGGAC 1016
||||||||||||||||||||||||||||| |||||||| | | |||||||||||||||||
Sbjct 959 AAAGAAGTTGTTGGGTTTAAAGGAAAGCTAGTTTGGGACTGC-ACAAAACCAGACGGGAC 1017
Query 1017 ACCAAGGAAACTGATGGATAGCTCGAAGCTTGCGTCTTTGGGATGGACACCGAAGATTTC 1076
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ACCACGGAAACTGATGGATAACTCGAAGCTTGCGTCTTTGGGATGGACACCGAAGATTTC 1077
Query 1077 GCTTAAAGATGGCCTCTCCCAAACTTATGAATGGTATTTGGAAAATGTTGTGCAGAAGAA 1136
|| |||||||| ||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 1078 ACTAAAAGATGGTCTCTCCCAAACTTATGAATGGTATTTGGAGAATGTTGTGCAGCAGCA 1137
Query 1137 GCAGTaaaaaaaaCAAGGTCCAAAACACAAAGCAATATTCATTCTCTTTACACGTGAATG 1196
||||||||||||| || | | | | | || | |||||||||||
Sbjct 1138 GCAGTAAAAAAAAT----TC-A-------------T-T-C-T-CT-TC-ACACGTGAATG 1173
Query 1197 TTTATGCGTTTGATTTTTGGTT-CTATACAGATCTCTCTATCTCTTTTATGTAATTTTTG 1255
||| ||||||||| ||||||| | |||||||||||| |||||||| ||||||||||||
Sbjct 1174 TTTGTGCGTTTGAAATTTGGTTTCAATACAGATCTCT--ATCTCTTTAATGTAATTTTTG 1231
Query 1256 TATTCATGGATTTCATACAGTTCAAGTTAAGCAAACTTACTTTGTAATAAATGTACCATT 1315
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||
Sbjct 1232 TATTCATGGATTTCATACCGTGCAAGTTAAGCAAACTTATTTTGTAATAAATGTAATATT 1291
Query 1316 GTTGTTGAGATTATCAATAAT 1336
|||||||||||||||| ||||
Sbjct 1292 GTTGTTGAGATTATCAGTAAT 1312
> Ahg926698 jgi|Araly1|926698|scaffold_202259.1
Length=1012
Score = 857 bits (464), Expect = 0.0
Identities = 783/936 (84%), Gaps = 25/936 (3%)
Strand=Plus/Plus
Query 208 AAATCCGCCAAGATCTTTGTCGCTGGACATAGGGGATTGGTTGGATCTGCCATTGTCCGC 267
||||| ||||| ||||| |||||||| ||| | || ||||||||||||||||||| ||||
Sbjct 63 AAATCAGCCAAAATCTTCGTCGCTGGTCATCGCGGTTTGGTTGGATCTGCCATTGCCCGC 122
Query 268 AAGCTCCAGGATCAGGGTTTCACCAATTTGGTCCTTCGAACCCATTCAGAGCTTGATCTC 327
||||| ||||| || |||||||||||| | || |||||||| || | ||||||||||||
Sbjct 123 AAGCTTCAGGAACAAGGTTTCACCAATCTCGTTCTTCGAACACACGCCGAGCTTGATCTC 182
Query 328 ACTAGCCAATCAGATGTTGAATCTTTCTTTGCTAC-AGAGAAACCAGTTTATGTCATCCT 386
| | ||| | ||||||||||| ||||||||| | |||||| || |||||||| |||||
Sbjct 183 CCCCGTCAAGCCGATGTTGAATCCTTCTTTGCT-CAAGAGAAGCCTGTTTATGTAATCCT 241
Query 387 AGCTGCTGCTAAAGTCGGTGGGATTCATGCTAACAACACATACCCAGCTGATTTCATTGG 446
||| || |||||||| ||||||||||||||||||||||| || || ||||||||||||||
Sbjct 242 AGCAGCAGCTAAAGTTGGTGGGATTCATGCTAACAACACTTATCCTGCTGATTTCATTGG 301
Query 447 GGTCAATCTCCAAATCCAGACCAATGTGATCCACTCTGCTTATAC-A-CACGGTGTGAAG 504
||||||||||| || ||||||||||||||||||||||| | ||| | ||||| || |||
Sbjct 302 TGTCAATCTCCAGATTCAGACCAATGTGATCCACTCTGC-T-TACGAGCACGGCGTCAAG 359
Query 505 AAACTCCTCTTCCTTGGTTCATCTTGCATTTACCCCAAATTTGCTCCTCAGCCGATTCCC 564
|| || ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 360 AAGCTTCTCTTCCTTGGATCATCCTGCATTTACCCCAAATTTGCTCCTCAGCCAATTCCT 419
Query 565 GAATCTGCGCTTCTT-ACCG-GTCCGCTCGAACCGACAAACGAATGGTATGCGATCGCCA 622
|| ||||| || || |||| | |||| ||||| || || || |||||||| || || |
Sbjct 420 GAGTCTGC-TTTGTTAACCGCAT-CGCTTGAACCAACTAATGAGTGGTATGCTATTGCTA 477
Query 623 AGATCGC-GGGTATTAAGA-TGTGTCAAGCTTACCGGCTTCAGCATCAG-TGGGATGCTA 679
||||||| ||| ||||||| | || || ||||| ||| ||||||| | | |||||||| |
Sbjct 478 AGATCGCAGGG-ATTAAGACT-TGCCAGGCTTATCGGATTCAGCA-CGGATGGGATGCGA 534
Query 680 TCTCCGGTATGCCCACGAATCTGTATGGTCAGAATGATAATTTCCACCCGGAGAATTCCC 739
|||| || ||||| || ||||| ||||||| ||||| ||||| |||||||||||||| |
Sbjct 535 TCTCTGGCATGCCTACTAATCTCTATGGTCCTAATGACAATTTTCACCCGGAGAATTCTC 594
Query 740 ATGTGCTGCCTGCTCTCATGAGGAGGTTTCATGAAGCCAAAGCCAAT-AATGCTGACGAA 798
||||||| |||||||||||||||||||| ||||| || |||| ||| | || || |||
Sbjct 595 ATGTGCTTCCTGCTCTCATGAGGAGGTTCCATGAGGCGAAAGTGAATGGA-GCAGAGGAA 653
Query 799 GTTGTGGTTTGGGGAAGTGGAAGCCCGTTGAGGGAGTTTTTACATGTCGATGATTTGGCT 858
|||||||| ||||| | || || |||||||||||||| || || || ||||||||||||
Sbjct 654 GTTGTGGTGTGGGGTACAGGCAGTCCGTTGAGGGAGTTCTTGCACGTGGATGATTTGGCT 713
Query 859 GATGCTTGTGTTTTCTTGATGGATC-AGTACAGCGGATTTGAGCATGTGAATGTAGGAAG 917
|||||||||||||||||| |||||| | |||||||| || |||||||| || |||||||
Sbjct 714 GATGCTTGTGTTTTCTTGCTGGATCGA-TACAGCGGGTTGGAGCATGTTAACATAGGAAG 772
Query 918 TGGTGTTGAAGTGACGATCAAAGAATTGGCTGAGTTGGTGAAAGAAGTTGTTGGGTTTAA 977
|||| ||||||||||||||||| ||||||||| ||||||| ||||| || || ||| |
Sbjct 773 TGGTCAAGAAGTGACGATCAAAGAGTTGGCTGAGCTGGTGAAGGAAGTCGTCGGTTTTGA 832
Query 978 AGGAAAGCTTGTTTGGGATACCACAAAACCAGACGGGACACCAAGGAAACTGATGGATAG 1037
||| ||||||| ||||||| ||| || ||||| |||||||| |||||||||||||| ||
Sbjct 833 AGGTAAGCTTGGATGGGATATCACTAAGCCAGATGGGACACCGAGGAAACTGATGGACAG 892
Query 1038 CTCGAAGCTTGCGTCTTTGGGATGGACACCGAAGATTTCGCTTAAAGATGGCCTCTC-CC 1096
||| ||||| ||||||||||| |||||||| ||| |||| || | |||||| || || ||
Sbjct 893 CTCAAAGCTCGCGTCTTTGGGTTGGACACCCAAGGTTTCTCTCAGAGATGGTCT-TCGCC 951
Query 1097 AAACTTATGAATGGTATTTGGAA-AATGTTGTGCAG 1131
|||| ||||| ||||||||| || ||||| ||||||
Sbjct 952 AAACATATGATTGGTATTTG-AAGAATGT-GTGCAG 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5