BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17910.1
Length=2295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472005 jgi|Araly1|472005|fgenesh2_kg.1__1959__AT1G17910.1 2322 0.0
Ahg920884 jgi|Araly1|920884|scaffold_102165.1 780 0.0
Ahg906760 jgi|Araly1|906760|Al_scaffold_0003_3888 385 9e-106
> Ahg472005 jgi|Araly1|472005|fgenesh2_kg.1__1959__AT1G17910.1
Length=2213
Score = 2322 bits (1257), Expect = 0.0
Identities = 1547/1687 (92%), Gaps = 20/1687 (1%)
Strand=Plus/Plus
Query 621 AATCTGCAACGGGGAGGGATGCTGCCAGGCAAAAGCACCTGTTGGCT-CTCAACAACTCA 679
||||||||||||| | ||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 534 AATCTGCAACGGGAACGGATGCTGCCAGGCAAAAGTACCTGTTGG-TGCTCAACAACTCA 592
Query 680 TTGGTGTCACAATAACGAACTCTACTAATGGAAACCTTACAAAGGGAGGAGGATGCAAAG 739
|||||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct 593 TTGGTGTCACAATATCGAACACTAGTAATGGAAACCTTACAACGGGAGGAGGATGCAAAG 652
Query 740 TTGCCTTTTTAACAGATGAAGTCTACACTTTATCGAATGCAACCGATCCTGAACAGtttt 799
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 653 TTGCCTTTTTAACAGATGAAGTCTACACTTTATCGAATGCAACCAATCCTGAACAGTTTT 712
Query 800 tttCTAAGGG---CGTTACTGTTAGCCTAGGATGGTTCATTCAAACGAA-AAACCATTCG 855
| |||||||| || || ||||||||||||||||||||| |||||||| ||| | || |
Sbjct 713 TCTCTAAGGGCTACGCTATTGTTAGCCTAGGATGGTTCATCCAAACGAAGAAA-CTTTTG 771
Query 856 TTTTTACAGTCATTGGACTGCCAAAACAGAGGAGAATTGGAT-AAAGGTaaaaaaaGAAC 914
||| || | ||||||| |||||||||||||| ||| || ||| ||| |||||| ||| ||
Sbjct 772 TTTCTAGAATCATTGGGCTGCCAAAACAGAGAAGAGTTCGATCAAA-GTAAAACAAGTAC 830
Query 915 AAG-ACAATGCACATGCGATAATCATATAGCTTCCGGGATGGGTTACGCAAGTTGTGCAT 973
|| | ||||||||||||||||| ||| ||| |||||||| ||| |||||||||||||
Sbjct 831 -AGCAAAATGCACATGCGATAATTATACAGCCTCCGGGATCAATTATGCAAGTTGTGCAT 889
Query 974 GTGCTAGCGGTTACAAGGGCAATCCATACGTT--T-CAGACGACTGCCAAGATATTAATG 1030
||||||| || |||||||| ||||||||| || | |||||||||||||||||||||||
Sbjct 890 GTGCTAGAGGGTACAAGGGTAATCCATACCTTACTGTAGACGACTGCCAAGATATTAATG 949
Query 1031 AGTGTACCGAATATAAGAACCCCTGTGGGGATACCAGA-ATTTTATATCGCAATACTTGT 1089
||||| | || ||| || | |||| || ||||| || |||||||||||||| | |||
Sbjct 950 AGTGTGCTGACCGTAACAATCGCTGTTGGAATACC-GATATTTTATATCGCAAAAAATGT 1008
Query 1090 ATTAATACATCGGGAGGTCATCG-TTGCATAGACTACCACATTCCAGAAGTAATGCTAGG 1148
| |||||| |||||| | || | |||| | |||||||||||||||||| |||||||||
Sbjct 1009 AAGAATACACCGGGAGATTAT-GATTGCGTGGACTACCACATTCCAGAAACAATGCTAGG 1067
Query 1149 ATTAGGTGCAGGtttttttGTCTTAATCGTAGGGGGTGGTATATGGTGGTGGAGAAAA-C 1207
|||||||||||||||||||||||||||||||| |||||||||||||||| || |||| |
Sbjct 1068 ATTAGGTGCAGGTTTTTTTGTCTTAATCGTAGCCGGTGGTATATGGTGGTTGA-AAAAGC 1126
Query 1208 TTCTTAGAAAAAGGAGGATGACAAACCGCAAGAGGAAATTCTTCAAACGTAATGGAGGAC 1267
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1127 TTCTTAGAAAAAAAAGGATGACAAAGCGCAAGAGGAAATTCTTCAAACGTAATGGAGGAC 1186
Query 1268 TATTGTTGCAGCAACAGTTAAATACAACTCAAGGCAGAGTTGAAAAAACAAAATTATTTA 1327
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 1187 TATTGTTGCAGCAACAGTTAACTACAACTCAAGGCAGAGTTGAAAAAACAAAAATATTCA 1246
Query 1328 GCTCAAGAGAGCTGGAGAAAGCCACTGATAACTTCAACGATAATAGGGTTATTGGACAAG 1387
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1247 GCTCAAGAGAGCTGGAAAAAGCCACTGATAACTTCAACGAAAATAGGGTTATTGGACAAG 1306
Query 1388 GCGGTCAAGGAACTGTGTACAAAGGTATGCTCGTAGATGGTAGATCCGTAGCAGTCAAGA 1447
| || |||||||||||||||||||||||||| ||||||||||| || || ||||||||||
Sbjct 1307 GTGGCCAAGGAACTGTGTACAAAGGTATGCTTGTAGATGGTAGGTCTGTTGCAGTCAAGA 1366
Query 1448 AATCCAATGTTGTAGATGAAGACAAACTACAAGAGTTCATCAACGAAGTCATTATTCTCT 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 AATCCAATGTTGTAGATGAAGACAAACTACAAGAGTTCATCAACGAAGTCATTATTCTCT 1426
Query 1508 CTCAGATCAACCATAGACACGTCGTGAAGCTTTTGGGATGTTGCCTTGAGACAGAAGTTC 1567
| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1427 CCCAGATCAACCATAGACACGTCGTGAAGCTTTTGGGATGTTGTCTTGAGACCGAAGTTC 1486
Query 1568 CTATTCTGGTGTACGAGTTCATCCCCAACGGAAACCTCTTTCAACATCTCCATGAAGAAT 1627
|| |||| || |||||||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1487 CTGTTCTTGTTTACGAGTTTATCACCAACGGAAACCTCTTTCAGCATCTCCATGAAGAAT 1546
Query 1628 TTGACGACTACACAGCCTTATGGGGTGTACGTATGCGCATTGCTGTAGATATCTCGGGAG 1687
||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1547 TTGACGACTACACGGTGTTATGGGGTGTACGTATGCGCATTGCTGTAGATATCGCGGGAG 1606
Query 1688 CTTTTTCGTATCTACATACTGCTGCATGTTCTCCAATTTATCACAGAGATATCAAGTCAA 1747
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 CTTTTTCGTATCTACACACTGCTGCATGTTCTCCAATTTATCACAGAGATATCAAGTCAA 1666
Query 1748 CAAACATATTACTCGATGAGAAATACCGGGCCAAAGTATCTGATTTTGGAACTTCAAGAT 1807
||||||||||||| |||||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct 1667 CAAACATATTACTAGATGAGAAATACCGAGCTAAAGTGTCTGACTTTGGAACTTCAAGAT 1726
Query 1808 CAGTTTCCATAGATCATACTCATTGGACAACTGTAATATCGGGTACAGTCGGGTATGTGG 1867
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1727 CAGTTTCCATAGATCATACTCATTGGACAACGGTAATATCGGGTACAGTCGGGTATGTGG 1786
Query 1868 ATCCAGAATACTACGGTTCTAGCCACTTTACTGAGAAAAGTGATGTTTATAGTTTCGGGG 1927
|||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1787 ATCCAGAATACTACGGGTCCAGCCATTTTACTGAAAAAAGTGATGTTTATAGTTTCGGGG 1846
Query 1928 TTGTCCTAGTAGAGCTTATTACAGGAGAGAAGCCTGTTATAACCCTTTCAGAGACTCAAG 1987
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1847 TTGTCCTAGTAAAGCTTATTACTGGAGAGAAGCCTGTTATAACCCTTTCAGAGACTCAAG 1906
Query 1988 AAATAACAGGGTTGGCAGATTATTTCAGACTTGCAATGAGAGAGAACCGACTCTTTGAGA 2047
||||||||||||||||||||||||||||||||||||||| ||||||| || | |||||||
Sbjct 1907 AAATAACAGGGTTGGCAGATTATTTCAGACTTGCAATGAAAGAGAACAGATTGTTTGAGA 1966
Query 2048 TCATCGATGCTCGAATAAGAAATGATTGCAAGCTGGAACAGGTCATTGCAGTGGCAAATC 2107
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1967 TCATCGATGCTCGAATAAGAAATGATTGCAAGCTGGAACAGGTGATTGCAGTGGCAAATC 2026
Query 2108 TGGCATTGAGGTGTCTGAAGAAAACAGGGAAGACTCGGCCAGATATGAGAGAAGTTTCTA 2167
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 2027 TAGCATTGAGGTGTCTGAAGAAGACAGGGAAGACTCGGCCAGATATGAGAGAAGTTGCTA 2086
Query 2168 CAGCTTTGGAGAGGATTTGTTCAGCTCCAGAGGATTTTCAGGTGCAAATTCAAATTGATG 2227
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2087 CAGCTTTGGAGAGGATCTGTTCATCTCCAGAGGATTTTCAGGTGCAAATTCAAATTGATG 2146
Query 2228 AAGAAGATGAAACCACGAAGTTATTTAGAGGCTATTCTGGAAGCACGGAGATTGCAAGAT 2287
|||||| ||||||| ||||||||||| ||| |||||||||||||| | || |||||||
Sbjct 2147 GAGAAGAAGAAACCATGAAGTTATTTACAGGATATTCTGGAAGCACTGCGAGTGCAAGAA 2206
Query 2288 CAATGTG 2294
|||||||
Sbjct 2207 CAATGTG 2213
Score = 713 bits (386), Expect = 0.0
Identities = 488/537 (91%), Gaps = 8/537 (1%)
Strand=Plus/Plus
Query 1 ATGAGGGGAAACAAGAATTACTACTTTCTGAGTCTCCTCTATTTTCTAAGTCTACCCATC 60
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1 ATGAGGGGAAACAAGAATTACTACTTTCTGATTCTCCTCTATTTTCTAAATCTACACATC 60
Query 61 CTTCATTTTAGCTCTTGTACACACAAATGTGGAGATATCCAGATCCCGTTCCCCTTTGGA 120
|| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTACATTCAAGATCTTGTACACACAAATGTGGAGATATCCAGATCCCGTTCCCCTTTGGA 120
Query 121 ATCGGAGAAATAGGTTGCTATCTCGACGAGTGGTACCAAGTCGAATGTCGACCAAGTGCT 180
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 121 ATCGGAGAAAAAGGTTGCTATCTCGACGAGTGGTACCAAGTCGAATGTCTACCAAATGCT 180
Query 181 ACTTCTGGGAAAGTTTTCCCCTTCCTTCCCAAAATCAACATGGAGGTTGTGAATATTTCC 240
| ||| |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 181 ATTTCCAGGAAAGTTTTCCCCTTCCTTCCCAAACTAAACATGGAGGTTGTGAATATTTCG 240
Query 241 CTTCCG-GGGACCAATGATGATATCTTTTATACTTATCCGTCAT--TCTCTTCAATTCGT 297
|||||| ||| ||||| || || ||||| || | | | || | ||||||||||||||
Sbjct 241 CTTCCGTGGG-CCAATTATAATGGCTTTTCTAGTGA-C-GTGAAAGTCTCTTCAATTCGT 297
Query 298 GTCAAAAGCCCGGTTGCATCCATGGGATGTTCTACCGATGGAAACGATTC-TGGATTGAC 356
|||||||||||| ||||||||||||||||||||| ||||||||| ||| | |||||||||
Sbjct 298 GTCAAAAGCCCGATTGCATCCATGGGATGTTCTAGCGATGGAAAAGAT-CATGGATTGAC 356
Query 357 TTTGAATTTTACGGAGACTCCTTTTTTCTTTGGGGACCAAAACAACCTCGTGGCTGTCGG 416
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 357 GTTGAATTTGACGGACACTCCTTTTTTTTTTGGGGACCAAAACAACCTCGTGGCTGTTGG 416
Query 417 TTGCAATAACAAGGCGTCGCTGACAAATGTAGAACCAACGATGGTGGGATGCGAGTCGAC 476
|||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 417 TTGCAACAACAAGGCGTCGCTGACAAATGTGGAACCAAAGATGGTGGGATGCGAGTCGAC 476
Query 477 TTGCACTACAAGCAACAATTCGCGGAGCATCCCTTTTTTCAACAAAGTTGGATGCTC 533
|||||||||||||| |||||||| |||||||||||||||| ||||| || |||||||
Sbjct 477 TTGCACTACAAGCACCAATTCGCAGAGCATCCCTTTTTTCGACAAAATTCGATGCTC 533
> Ahg920884 jgi|Araly1|920884|scaffold_102165.1
Length=2419
Score = 780 bits (422), Expect = 0.0
Identities = 874/1089 (80%), Gaps = 44/1089 (4%)
Strand=Plus/Plus
Query 1137 AGTAATGCTAGGATTAGGTGCAGGtttttttGTCTTAATCGTAGGGGGTGGTATATGGTG 1196
||||||| |||| ||||||||||||| ||||| || ||| ||||| || |||||
Sbjct 1161 AGTAATGATAGGCGTAGGTGCAGGTTTAGGCATCTTAGTCCTAGCAGGTGGAATTTGGTG 1220
Query 1197 G-TGGAGAAAACTT-CTTAGAAAA-AGGAGGATGACAAACCGCAAGAGGAAATTCTTCAA 1253
| | ||| ||| || ||| ||||| || | ||||| || | || || |||||||| |
Sbjct 1221 GCT-GAG-AAAGTTCCTT-GAAAAGAGAAAGATGAGTAAGAGGAAAAGAAAATTCTTTGA 1277
Query 1254 ACGTAATGGAGGACTATTGTTGCAGCAACAGTTAAATACAACTCAAGGCAGA-GTTGAAA 1312
||||||||| |||||||||||||| ||||| || |||||| |||| | | || || |
Sbjct 1278 ACGTAATGGGGGACTATTGTTGCAACAACAACTACATACAAGAGAAGGTA-ACGTCGAGA 1336
Query 1313 AAACAA-AATTATTTAGCTCAAGAGAGCTGGAGAAA-GCCACTGATAA-CTTCAACGATA 1369
| |||| || |||| | ||| | ||| || || ||| |||||||| || ||| | ||| |
Sbjct 1337 AGACAAGAA-TATTCACCTCGACAGAACTTGA-AAAGGCCACTGA-AAGCTTTAGCGAAA 1393
Query 1370 ATAGGGTTA-TTGGACAAGGCGGTCAAGGAACTGTGTACAAAGGTATGCTCGTAGATGGT 1428
||| || || |||||||||| ||||| || ||||| ||||| || ||||| |||||||||
Sbjct 1394 ATA-GGATACTTGGACAAGGTGGTCAGGGTACTGTATACAAGGGAATGCTTGTAGATGGT 1452
Query 1429 AGATCCGTAGCAGTCAAGAAATCCA-ATGTTGTAGATGAAGACAAACTACAAGAGTTCAT 1487
||| | || || ||||||||||||| | ||||||||||||||||||||| | ||||||||
Sbjct 1453 AGAACTGTCGCTGTCAAGAAATCCACA-GTTGTAGATGAAGACAAACTAGAGGAGTTCAT 1511
Query 1488 CAACGAAGTCATTATTCTCTCTCAGATCAACCATAGACACGTCGTGAAGCTTTTGGGATG 1547
||| |||||| | |||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1512 CAATGAAGTCGTCATTCTCTCTCAGATTAACCATAGACATGTCGTCAAGCTTTTGGGATG 1571
Query 1548 TTGCCTTGAGACAGAAGTTCCTATTCTGGTGTACGAGTTCATCCCCAACGGAAACCTCTT 1607
||| ||||| ||||||||||| |||||||| |||||||| || ||| || ||||| ||
Sbjct 1572 TTGTCTTGAAACAGAAGTTCCAATTCTGGTTTACGAGTTTATTGTCAATGGTAACCT-TT 1630
Query 1608 T-CAACATCTCCATGAAGAATTTGACGACTACACAGCCTTA--TGGGGTGTACG-TATGC 1663
| |||||| |||||||||||| ||| || ||||| | | | ||||| || || | |||
Sbjct 1631 TCCAACATATCCATGAAGAATCTGATGATTACAC-G-GTGAGTTGGGGAGTGCGCT-TGC 1687
Query 1664 GCATTGCTGTAGATATCT-CGGGAGCTTTTTCGTATCTACATACTGCTGCATGTTCTCCA 1722
||||||| || ||||| | | |||||| |||||||| | ||| |||||||||||||||||
Sbjct 1688 GCATTGCCGTGGATAT-TGCTGGAGCTCTTTCGTATTTGCATTCTGCTGCATGTTCTCCA 1746
Query 1723 ATTTATCACAGAGATATCAAGTCAACAAACATATTACTCGATGAGAAATACCGGGCCAAA 1782
||||||||||||||||| |||||||||||||||||||| || ||||| || || || |||
Sbjct 1747 ATTTATCACAGAGATATAAAGTCAACAAACATATTACTAGACGAGAAGTATCGAGCTAAA 1806
Query 1783 GTATCTGATTTTGGAACTTCAAGATCAGTTTCCATAGATCATACTCATTGGACAACTGTA 1842
|| ||||||||||| |||||||||||||| | ||||||||||||| |||||||| |
Sbjct 1807 GTGTCTGATTTTGGTACTTCAAGATCAGTAACGGTAGATCATACTCACTGGACAACAATT 1866
Query 1843 ATATCGGGTACAGTCGGGTATGTGGATCCAGAATACTACGGTTCTAGCCACTTTACTGAG 1902
|| || |||||||| || |||||||||||||| |||||||| || ||||| | ||| ||
Sbjct 1867 ATTTCAGGTACAGTAGGATATGTGGATCCAGAGTACTACGGATCCAGCCAATATACCGAT 1926
Query 1903 AAAAGTGATGTTTATAGTTTCGGGGTTGTCCTAGTAGAGCTTATTACAGGAGAGAAGCCT 1962
|| |||||||||||||| |||||||| |||| || || ||||||||||||||||| |||
Sbjct 1927 AAGAGTGATGTTTATAGCTTCGGGGTCATCCTTGTTGAACTTATTACAGGAGAGAAACCT 1986
Query 1963 GTTATAACCCTTTCAGAGA--CTCAAGAAATAACAGGGTTGGCAGATTATTTCAGACTTG 2020
|| ||||||||| | || | ||| ||||||| ||||||||| || |||||||| |||
Sbjct 1987 GTAATAACCCTTCC-GA-ATTCTCGGGAAATAAGAGGGTTGGCGGAGCATTTCAGAGTTG 2044
Query 2021 CAATGAGAGAGAACCGACTCTTTGAGATCATCGATGCTCGAATAAGAAATGATTGCAAGC 2080
| |||| ||||||| | ||||||| || || ||||||||||| | | ||| |||||| |
Sbjct 2045 CCATGAAAGAGAACAAATTCTTTGATATTATGGATGCTCGAATCACAGATGGTTGCAAAC 2104
Query 2081 TGGAACAGGTCATTGCAGTGGCAAATCTGGCAT-TGAGGTGTCTGAAGAAAACAGGGAA- 2138
||||| || || ||||| || ||||| ||| | || |||||||| || ||||||
Sbjct 2105 CAGAACAAGTAATGGCAGTAGCGAATCTAGCAAAT-AGATGTCTGAATTCAA-AGGGAAA 2162
Query 2139 GACTCGGCCAGATATGAGA-GAAGT-TTCTAC--AGCTTTGGAGAGGATTTGTTCAGCTC 2194
|| || ||| |||||||| || || || ||| |||| | ||| ||| |||||| |||
Sbjct 2163 GAAGCGCCCAAATATGAGACGA-GTGTT-TACCGAGCTA-G-AGAAGATCTGTTCATCTC 2218
Query 2195 CAGAGGATT 2203
|||||||||
Sbjct 2219 CAGAGGATT 2227
> Ahg906760 jgi|Araly1|906760|Al_scaffold_0003_3888
Length=1959
Score = 385 bits (208), Expect = 9e-106
Identities = 488/621 (79%), Gaps = 27/621 (4%)
Strand=Plus/Plus
Query 1237 AAGAGGAAATTCTTCAAACGTAATGGAGGACTATTGTTGCAGCAACAGTTAAATACAACT 1296
|||| ||| |||||||| |||||||| || ||||||||||| ||||| || | | ||||
Sbjct 1096 AAGAAGAAGTTCTTCAAGCGTAATGGGGGTCTATTGTTGCAACAACAATTGACTGCAACA 1155
Query 1297 CAAGGCAGA-GTTGAAAAAACAAAATTATTTAGC-TCAAGAGAGCTGGAGAAAGCCACTG 1354
|||||| | || || || |||||| | || | | || |||||| |||| ||||| ||||
Sbjct 1156 GAAGGCA-ACGTCGAGAAGACAAAAGTGTTCA-CTTCGAGAGAGTTGGAAAAAGCTACTG 1213
Query 1355 ATAACTTCAACGAT-AATAGGGTTA-TTGGACAAGGCGGTCAAGGAACTGTGTACAAAGG 1412
| ||||| ||| | |||| | || |||| || || |||||||| ||||||||||||||
Sbjct 1214 AAAACTTTAAC-TTAAATA-GAATACTTGGTCAGGGTGGTCAAGGTACTGTGTACAAAGG 1271
Query 1413 TATGCTCGTAGATGGTAG-ATCCGTAGCAGTCAAGAAATCCAATGTTGTAGATGAAGACA 1471
||||| | || ||||| || |||||||| ||||| ||||| || || || |||||||
Sbjct 1272 AATGCTTGGCGACGGTAGAAT-AGTAGCAGTGAAGAAGTCCAAAGTCGTGGACGAAGACA 1330
Query 1472 AACTACAAGAGTTCATCAACGAAGTCATTATTCTCTCTCAGATCAACCATAGACACGTCG 1531
| ||| ||||||||||||| || || | ||||| || ||||||||||| ||| || | |
Sbjct 1331 AGCTAGAAGAGTTCATCAATGAGGTTGTCATTCTTTCGCAGATCAACCACAGAAACATTG 1390
Query 1532 TGAAGCTTTTGGGATGTTGCCTTGAGACAGAAGT-TCCTA-TTCTGGTGTACGAGTTCAT 1589
|||| || ||||| ||||||||||||||| || | ||| | ||||||| |||||||| ||
Sbjct 1391 TGAAACTCTTGGGCTGTTGCCTTGAGACA-AA-TGTCCCAGTTCTGGTCTACGAGTTTAT 1448
Query 1590 CCCCAACGGAAACCTCTTTCAACATCTCCATGAAGAATTTGACGACTACAC-A-GCCTTA 1647
|| || || ||||| ||| ||||||| ||||| ||||| || || ||||| | | | ||
Sbjct 1449 TCCTAATGGTAACCTTTTTGAACATCTTCATGAGGAATTGGAGGATTACACGATGAC-TA 1507
Query 1648 --TGGGGTGTACGTATGCGCATTGCTGTAGATATCT-CGGGAGCTTTTTCGTATC-TACA 1703
|||| || || | ||||||||||||||||| | | | |||| |||| || | | ||
Sbjct 1508 CTTGGGAAGTGCGCCTCCGCATTGCTGTAGATAT-TGCAGAAGCTCTTTCTTA-CTTGCA 1565
Query 1704 -TACTGCTGCATGTTCTCCAATTTATCACAGAGATATCAAGTCAACAAACATATTACTCG 1762
| | ||||||| |||||||| ||||||||||| ||||||| ||||||||| | || |
Sbjct 1566 CT-CGGCTGCATCCTCTCCAATCTATCACAGAGACGTCAAGTCTACAAACATAATGCTGG 1624
Query 1763 ATGAGAAATACCGGGCCAAAGTATCTGATTTTGGAACTTCAAGATCAGTTTCCATAGATC 1822
|||| ||||| || ||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 1625 ATGAAAAATATCGAGCCAAAGTATCTGATTTTGGAACTTCAAGATCAGTAACGGTGGATC 1684
Query 1823 ATACTCA-TTGGACAACTGTA 1842
| || || ||| ||||| |||
Sbjct 1685 ACACCCACTTG-ACAACAGTA 1704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86426765905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5