BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17940.1
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920718 jgi|Araly1|920718|scaffold_101999.1 2093 0.0
Ahg926713 jgi|Araly1|926713|scaffold_202274.1 1376 0.0
> Ahg920718 jgi|Araly1|920718|scaffold_101999.1
Length=1259
Score = 2093 bits (1133), Expect = 0.0
Identities = 1218/1260 (97%), Gaps = 2/1260 (0%)
Strand=Plus/Plus
Query 217 TTTCTTAAGTTCTG-TGAAAAATGGGATGCTTTGCGTCAACGCCGAAAGACTCAGGTGGG 275
||||||||| |||| || ||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1 TTTCTTAAGCTCTGTTG-AAAATGGGATGCTTTGCATCAACACCGAAAGACTCTGGTGGG 59
Query 276 AACAGAAGAAAGCCAACAAGCATCGGTGAGGTTTCAGTATATGTACCTGGTTTAAGGATA 335
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 60 AATAGAAGAAAGCCAACAAGCATCGGTGAGGTTTCAGTGTATGTACCTGGTTTACGGATA 119
Query 336 CCCAGAGCGGTGGATTTTTTGCAGTCACTTGGTGATCAATTACCGAAGACTTTAGTGGAA 395
|| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 120 CCGAGAGCGGTGGATTTTTTGCAGTCACTTGGTGATCAATTACCCAAGACTCTAGTGGAA 179
Query 396 CGCTTGACAGCTTTAAGAACGCGTATAGTAGTGATGGCTAATCAAGAAGGACCTACAATT 455
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 180 CGCTTGACAGCTTTAAGAACGCGTATAGTGGTGATGGCTAACCAAGAAGGACCTACAATT 239
Query 456 ACGAGAACTAGGAGAAAGACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCT 515
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACGAGAACGAGGAGAAAGACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCT 299
Query 516 TTGCTAGATTATCTACCTGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTT 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTGCTAGATTATCTACCTGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTT 359
Query 576 AAAGTGCAATTTAATTGGGTAAATCAGGAGGATGAGGAAGAGGAAACAGAGATGTCAAAC 635
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 AAAGTACAATTTAATTGGGTAAATCAGGAGGACGAGGAAGAGGAAACAGAGATGTCAAAC 419
Query 636 GTTTGGTATGAAGTTTTATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCC 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTTGGTATGAAGTTTTATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCC 479
Query 696 AATTTACTGCTTCTTCCTAGAGGTTCTAGTGATGGTCACAATCATCCGAAAGTATCCGAA 755
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 480 AATTTACTGCTTCTTCCTAGAGGTTCTAGTGACGGTCACAACCATCCGAAAGTATCCGAA 539
Query 756 GAAAACAGACGAACTTCGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGATTGTGCC 815
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 GAAAACAGACGAACTTCGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGACTGTGCC 599
Query 816 GTTAAGCATGTTCTCCCCCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCAGTTGACTTA 875
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 600 GTTAAGCATGTTCTCCCTCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCGGTTGACTTA 659
Query 876 GCAGAAGGAACTCTACGGGCTCTTTGCTTGCAAGCACTTGGCCAGGGTGTTGATATCCAA 935
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCGGAAGGGGTTCTACGGGCTCTTTGCTTGCAAGCACTTGGCCAGGGTGTTGATATCCAA 719
Query 936 CTTGGCATGGCGATTGATAGCTCAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGT 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTTGGCATGGCGATTGATAGCTCAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGT 779
Query 996 GAAATGGTGAAATATTGGCAGCAGGCACAAGATAATTTAATGAATCTCCCGTTAGCAAAT 1055
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 GAAATGGTGAAATATTGGCAGCAGGCACAAGATAATTTAATGAATCTTCCGTTAGCAAAT 839
Query 1056 GGTTGGGGAGAAAAGCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCG 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGTTGGGGAGAAAAGCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCG 899
Query 1116 GCTTACTACTATCATGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATG 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCTTACTACTATCATGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATG 959
Query 1176 GCAGTTGCTGCTTTACAAGCTGCAGATGAATGTTTCAAAGAAAGTAAGAAAGCATCCGAA 1235
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 960 GCAGTTGCTGCTTTACAAGCTGCAGATGAATGTTTTAAAGAGAGTAAGAAAGCATCTGAA 1019
Query 1236 GCATTCAACGCCTCTGCGCCTACTTCAAGAACACCGCCCCTCTTTGGAACAATGAAATAT 1295
||||| ||||||||| | ||||||||||| |||||||| || |||||||||||||| |||
Sbjct 1020 GCATTTAACGCCTCTTCACCTACTTCAAGGACACCGCCGCTATTTGGAACAATGAAGTAT 1079
Query 1296 CTAACTGAGAAAATCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTCTAC 1355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1080 CTAACTGAGAAAATCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTATAC 1139
Query 1356 TCCTATGAAAAAATCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAA 1415
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCTTATGAAAAAATCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAA 1199
Query 1416 CCAGATGAGTATCAACTTCCACTCGCCGAAGCTTCGTAGTCTGAAGATGCTCAAAGCGCT 1475
|||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 1200 CCAGATGAGTATCAACTTCCTCTCGTCGAAGCTTAGTAGTCTGAAGATGCTCAAAGCGCT 1259
> Ahg926713 jgi|Araly1|926713|scaffold_202274.1
Length=1315
Score = 1376 bits (745), Expect = 0.0
Identities = 1074/1234 (87%), Gaps = 17/1234 (1%)
Strand=Plus/Plus
Query 235 AAATGGGATGCTTTGCGTCAACGCCGAAAGACTCAGGTGGGAACAGAAGAAAGCCAACAA 294
|||||||||||||||| |||| |||||| ||| | ||||| ||||||||||||||||| |
Sbjct 19 AAATGGGATGCTTTGCATCAAGGCCGAAGGACACTGGTGGAAACAGAAGAAAGCCAACGA 78
Query 295 GCATCGGTGAGGTTTCAGTATATGTACCTGGTTTAAGGATA-CCCAGAGCGGTGGA-TTT 352
||||||| || ||||| ||||| |||||||||||||||||| ||||| | ||||| |||
Sbjct 79 GCATCGGGGATGTTTCTGTATACGTACCTGGTTTAAGGATACCCCAG-CCTGTGGAGTTT 137
Query 353 TTTGCAGTCACTTGGTGATCAATTACCGAAGACTTTAGTGGAACGCTTGACAGCTTTAAG 412
| | |||||||| ||||||||||| || |||||| | ||||| |||||||||||||||||
Sbjct 138 TCT-CAGTCACTGGGTGATCAATTGCCAAAGACTCTGGTGGAGCGCTTGACAGCTTTAAG 196
Query 413 AACGCGTATAGTAGTGATGGCTAATCAAGAAGGACCTACAATTACGAGAACTAGGAGAAA 472
|||||| || || |||||||| |||||||||||||| || || || ||||||||||| ||
Sbjct 197 AACGCGAATTGTTGTGATGGCAAATCAAGAAGGACCAACGATAACAAGAACTAGGAGGAA 256
Query 473 GACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCTTTGCTAGATTATCTACC 532
|||||| ||||||||||| || ||| |||||||||||||||||| ||||||||||||
Sbjct 257 GACACAGCATGGAGGTTCTACACTCGCAGATCTCCATCAAGCTTTGGAAGATTATCTACC 316
Query 533 TGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTTAAAGTGCAATTTAATTG 592
|||| |||| |||||||||||||||||||||||| |||| | ||||| || ||||||||
Sbjct 317 TGTTCTCTTAGGATTAACTAAAGATGGTAGCCATTTACAATGCAAAGTACAGTTTAATTG 376
Query 593 GGTAAATCAGGAGGATGAGGAAGAGGAAACAGAGATGTCAAACGTTTGGTATGAAGTTTT 652
|||||||||||| |||||| |||||||||||| || |||||||||||||||||| | |
Sbjct 377 GGTAAATCAGGAAGATGAGCAAGAGGAAACAGCCATATCAAACGTTTGGTATGAAATACT 436
Query 653 ATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCCAATTTACTGCTTCTTCC 712
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 437 GTCGGTTTTGCATCTAATGGCAATGCTACAAATGTCACAAGCCAATTTACTACTTCTTCC 496
Query 713 TAGAGGTTCTAGTGATGGTCACAATCATCCGAAAG-TATCCGAAGAAAACAGACGAACTT 771
||||||||| |||||||| | | |||||| |||| |||| |||||||| || ||| |||
Sbjct 497 TAGAGGTTCCAGTGATGG-CT-A-TCATCC-AAAGATATCAGAAGAAAATAGGCGAGCTT 552
Query 772 CGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGATTGTGCCGTTAAGCATGTTCTCC 831
| || |||||||||||||| ||||||||||| ||||| ||||| || ||||||||||| |
Sbjct 553 CAATCGATATCTTCTTAAAGGCAGCTGGATACCTTGACTGTGCTGTGAAGCATGTTCTTC 612
Query 832 CCCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCAGTTGACTTAGCAGAAGGAACTCTAC 891
| |||||||| | |||| ||||||||||||||||||||| |||||||||| || |||
Sbjct 613 CTCAGTTTTCAACCGAGCTGAGGAGAAGTTTACCAGTTGACCTAGCAGAAGGCGCTTTAC 672
Query 892 GGGCTCTTTGCTTGCAAGCACTT-GGCCAGGGTGTTGATATCCAACTTGGCATGGCGATT 950
| || ||||| ||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 673 GAGCACTTTGTTTGCAAGCA-TTAGGCCAGGGTGTTGATATCCAACTTGGGATGGCGATT 731
Query 951 GATAGCT-CAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGTGAAATGGTGAAATA 1009
||||| | |||| ||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 732 GATAG-TGCAAAAGCCACTCTTGCTGTGAAACGAAGACTTTCGTGTGAAATGGTGAAATA 790
Query 1010 TTGGCAGCAGGCACAAGATAATTTAATGAATCTCCCGTTAGCAAATGGTTGGGGAGAAAA 1069
|||||||||||||||||||| ||||||||||| || |||||||| || ||||| |||||
Sbjct 791 CTGGCAGCAGGCACAAGATAACTTAATGAATCTTCCATTAGCAAACGGGTGGGGCGAAAA 850
Query 1070 GCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCGGCTTACTACTATCA 1129
|||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 851 GCATAGTCTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCAGCTTACTACTACCA 910
Query 1130 TGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATGGCAGTTGCTGCTTT 1189
|||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 911 CGGTTTGATTCTTGATGAAGGAAACACCGAGAAATCACATGGCATGGCGGTTGCTGCTTT 970
Query 1190 ACAAGCTGCAGATGAATGTTTCAAAGAAAGTAAGAAAGCATCCGAAGCATTCAACGCCTC 1249
||| ||||||||||| |||||||||||||||||||||||| || || || ||| ||||
Sbjct 971 ACAGGCTGCAGATGAGTGTTTCAAAGAAAGTAAGAAAGCAAGTGAGGCGTTTAACACCTC 1030
Query 1250 TGCGCCTACTTCAAGAACACCGCCCCTCTTT-GGAACAATGAAATATCTAACTGAGAAAA 1308
| | || || ||||| || || || || ||| || ||||||||||||||| | |||||||
Sbjct 1031 TTCACCCACATCAAGGACTCCTCCACT-TTTCGGGACAATGAAATATCTATCAGAGAAAA 1089
Query 1309 TCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTCTACTCCTATGAAAAAA 1368
| |||||||| ||||| ||||||||||||||||||| |||||| ||||| |||||||| |
Sbjct 1090 TACCGAAAGAAACTTCAAGTAAAGTCAGGATAAACCTTGATCTATACTCTTATGAAAAGA 1149
Query 1369 TCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAACCAGATGAGTATC 1428
|||||||||||||||| || ||||||||||| || |||||||||||||| |||||||| |
Sbjct 1150 TCATGGAGACAGCACCGACGCTTCCTGATTTTGCCTTGGCATTGAAACCCGATGAGTACC 1209
Query 1429 AACTTCCA-CTCGCCGAAGCTTCGTAGTCTGAAG 1461
||||||| || | ||| || || | ||||||||
Sbjct 1210 AACTTCCTTCT-GTCGATGCGTCATGGTCTGAAG 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5