BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17950.1
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920720 jgi|Araly1|920720|scaffold_102001.1 1219 0.0
Ahg908956 jgi|Araly1|908956|Al_scaffold_0002_2037 398 6e-110
> Ahg920720 jgi|Araly1|920720|scaffold_102001.1
Length=787
Score = 1219 bits (660), Expect = 0.0
Identities = 748/789 (95%), Gaps = 12/789 (2%)
Strand=Plus/Plus
Query 133 GAGAGGTATTA-AAAAATGATGTGTAGTCGAGGCCATTGGAGACCTGCAGAAGACGAGAA 191
|||||| |||| || ||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 5 GAGAGGAATTAGAAGAATGATGTGCAGTCGAGGCCATTGGAGACCTGCAGAAGATGAGAA 64
Query 192 GCTAAGAGAACTCGTCGAACAATTTGGTCCTCATAATTGGAACGCCATAGCTCAGAAGCT 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 GCTAAGAGAACTCGTCGAACAATTTGGTCCTCATAATTGGAACGCCATAGCTCAGAAGCT 124
Query 252 CTCTGGTCGATCTGGTAAGAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCTAGGAT 311
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 CTCTGGTCGATCTGGCAAGAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCTAGGAT 184
Query 312 TAACCGAAACCCTTTCACGGAGGAAGAAGAAGAAAGGCTTTTAGCGTCTCATCGGATCCA 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TAACCGAAACCCTTTCACGGAGGAAGAAGAAGAAAGGCTTTTAGCGTCTCATCGGATCCA 244
Query 372 TGGGAACAGATGGTCTGTGATCGCTAGATTTTTTCCC-GGTCGAACTGATAACGCTGTTA 430
|||||| |||||||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct 245 TGGGAATAGATGGTCTGTGATCGCTAGATTTTT-CCCAGGTCGAACCGATAACGCTGTTA 303
Query 431 AAAACCATTGGCACGTCATCATGGCTCGTCGTGGCCGAGAACGGTCCAAGCTCCGTCCAC 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 304 AAAACCATTGGCACGTCATCATGGCTCGTCGTGGCCGAGAACGGTCCAAGCTCCGACCAC 363
Query 491 GAGGCCTTGGCCATGATGGCACGGTGGCTGCGACTGGGATGATTGGTAATTATAAAGACT 550
| |||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct 364 GTGGCCATGGCCATGATGGCACGGTATCTGCGACTGGGATGATGGGTAATTATAACGACT 423
Query 551 GCGATAAGGAGAGAAGATTGGCAACCACAACCGCTATCAATTTTCCTTATCAATTCTCTC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GCGATAAGGAGAGAAGATTGGCAACCACAACCGCTATCAATTTTCCTTATCAATTCTCTC 483
Query 611 ATATTAATCATTTTCAAGTCCTCAAAGAGTTCTTGACCGGAAAGATCGGGTTCAGAAATA 670
|||||||||||||||||||||||||||| |||||||||||||||| ||||||| | ||||
Sbjct 484 ATATTAATCATTTTCAAGTCCTCAAAGAATTCTTGACCGGAAAGACCGGGTTCCGGAATA 543
Query 671 GTACTACTCCAATACAAGAAGGAGCAATAGACCAAACTAAACGACCGATGGAGTTCTACA 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GTACTACTCCAATACAAGAAGGAGCAATAGACCAAACTAAACGACCGATGGAGTTCTACA 603
Query 731 ATTTTCTTCAAGTAAACACGGATTCGAAGATACACGAATTGATAGATAATTCAAGAAAAG 790
||||||| ||| |||||||||||||||||| || || | ||||||| |||||||||||||
Sbjct 604 ATTTTCTCCAATTAAACACGGATTCGAAGAAACCCGTAGTGATAGACAATTCAAGAAAAG 663
Query 791 ACGAAGAAGAAGA---TGTCGATCAAAACAACCGAATTCCTAACGAGAATTGTGTTCCAT 847
| ||||||||||| ||||| |||||||||||| | ||||||||||||||||| |
Sbjct 664 ATGAAGAAGAAGAAGATGTCGCTCAAAACAACCG--T----AACGAGAATTGTGTTCCCT 717
Query 848 TTTTCGACTTTTTGTCTGTTGGAAACTCTGCCTCTCAGGGTTTATGTTAATTTGTCCGTA 907
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 718 TTTTCGACTTTTTGTCTGTTGGAAACTCTGCCTCTCAGGGTTTATGTTAATTAGTCCGTA 777
Query 908 CCACATGTA 916
|||||||||
Sbjct 778 CCACATGTA 786
> Ahg908956 jgi|Araly1|908956|Al_scaffold_0002_2037
Length=732
Score = 398 bits (215), Expect = 6e-110
Identities = 281/313 (90%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 151 ATGTGTAGTCGAGGCCATTGGAGACCTGCAGAAGACGAGAAGCT-AAGAGAACTCGTCGA 209
||||| || ||||||||||||||||| || |||||||||||||| ||| || || |||||
Sbjct 7 ATGTGCAGCCGAGGCCATTGGAGACCAGCTGAAGACGAGAAGCTCAAG-GATCTTGTCGA 65
Query 210 ACAATTTGGTCCTCATAATTGGAACGCCATAGCTCAGAAGCTCTCTGGTCGATCTGGTAA 269
||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 66 ACAATACGGTCCTCATAATTGGAACGCCATAGCTCTCAAGCTCCCTGGTCGATCTGGTAA 125
Query 270 GAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCTAGGATTAACCGAAACCCTTTCAC 329
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 126 GAGTTGTAGATTGAGGTGGTTTAATCAATTGGATCCAAGGATAAACCGAAACCCTTTCAC 185
Query 330 GGAGGAAGAAGAAGAAAGGCTTTTAGCGTCTCATCGGATCCATGGGAACAGATGGTCTGT 389
||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct 186 GGAAGAAGAAGAAGAAAGACTTTTAGCGGCTCATCGGATCCATGGGAACAGATGGTCCAT 245
Query 390 GATCGCTAGATTTTTTCCC-GGTCGAACTGATAACGCTGTTAAAAACCATTGGCACGTCA 448
||||| || |||| ||| || ||||||||||||| || || ||||||||||||||||
Sbjct 246 CATCGCAAGGCTTTT-CCCTGGAAGAACTGATAACGCCGTCAAGAACCATTGGCACGTCA 304
Query 449 TCATGGCTCGTCG 461
|||||||||||||
Sbjct 305 TCATGGCTCGTCG 317
Score = 67.6 bits (36), Expect = 2e-10
Identities = 40/42 (95%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 840 TGTTCCATTTTTCGACTTTTTGTCTGTTGGAAACTCTGCCTC 881
|||||| || ||||||||||||||||||||||||||||||||
Sbjct 687 TGTTCCCTTCTTCGACTTTTTGTCTGTTGGAAACTCTGCCTC 728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41858962866
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5