BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17960.1
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472010 jgi|Araly1|472010|fgenesh2_kg.1__1964__AT1G17960.1 2161 0.0
Ahg920738 jgi|Araly1|920738|scaffold_102019.1 669 0.0
Ahg942264 jgi|Araly1|942264|scaffold_602808.1 588 5e-167
> Ahg472010 jgi|Araly1|472010|fgenesh2_kg.1__1964__AT1G17960.1
Length=1529
Score = 2161 bits (1170), Expect = 0.0
Identities = 1418/1535 (92%), Gaps = 27/1535 (2%)
Strand=Plus/Plus
Query 47 CTTCGTTCTCTGCTCATCCATCGATGGCGAATAATCATCATCCCAAGGATGAGGCTTATC 106
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 CTTCGTTCTCTGCTCCTCCATCGATGGCGAATAATCATCATCCCAAGGATGAGGCTTATC 65
Query 107 TCTCATCCGTCATCCCCAAGCGTATCAGGCTCTTCGAGGAAATCCAAGCCGAGCAGCTTG 166
||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||
Sbjct 66 TCTCATCCGTCATCCCCAAGCGTATCAGGATCTTCGAGGAAATCCAAGCCGAACAACTTG 125
Query 167 AGCAGCTTCAATCTCGGCCACACGATCCAATCAAGATTACTCTTCTCCCCGACGGTATCG 226
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 126 AGCAGCTTCAATCTCGGCCACACGATCCGATCAAGATCACTCTTCTCCCAGACGGTATCG 185
Query 227 AGAAAGAAGG-AAGGAGATGGGAGACCTCTCCAATGGACATCGCAGTGCAGATTTCTAAG 285
|||||| || ||| ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 186 TGAAAGAGGGGAAG-AGATGGGAGACAACTCCAATGGATATCGCAGTGCAGATTTCTAAG 244
Query 286 GGTTTAGCAAAATCTGCTCTGGTTTCTTCGGTTAATCATGTCTTGTGGGACATGAATAGG 345
||||| || |||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 245 GGTTTCGCCAAATCTGCTCTGGTTTCTTCGGTTGATCATGTCCTGTGGGACATGAATAGG 304
Query 346 CCCCTGGAAGGTGATTGTTC-CTTAGAGATTTTCGGATTTGACAGCGACCAAGGCCGTAA 404
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 305 CCCCTGGAAGGTGATTGTTCGCT-AGAGATTTTCGGATTTGACAGCGACCAAGGCCGTGA 363
Query 405 TACTTTCTGGCATTCTAGCGCCCACATTCTAGGCCAGGCTCTCGAGCAGGAGTATGGATG 464
|||||||||||||||||| || | ||||||||| || |||||||||||||||||||||||
Sbjct 364 TACTTTCTGGCATTCTAGTGCTCTCATTCTAGGTCACGCTCTCGAGCAGGAGTATGGATG 423
Query 465 CAAGCTATGTATTGGACCCTGCGAACCCAGAGATGAAGGCTTCTATTACGATTCACTTTA 524
||||||||| |||||||||||| || ||| |||||| ||||||| || |||| || ||||
Sbjct 424 CAAGCTATGCATTGGACCCTGCAAAACCATAGATGAGGGCTTCTTTTGCGATGCATTTTA 483
Query 525 TTATGGCGAGCTGGGATTAAACGACAATCATTTTCCAAACATCGAAGCAAAATTACCCAT 584
| | ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 484 TCACGGCGAGCTGGGCTTAAACGACAATCATTTTCCAAACATCGAAGCAGAATTGCCCAT 543
Query 585 TAGAATGGCCGAATTTGGAGTGTTACACCGAAATGAGGACAGTGGAGCACTTGGTGGAAT 644
||||||||| || |||||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct 544 TAGAATGGCTGATTTTGGAGTGTTACATCGAAATGAGGAAAGTGGAGCACTTAGTGGAAT 603
Query 645 GACCCGTGTCCGACGGTTTGTACAGGATGATGCACACATATTCTGTAGAGTGGATCAGGT 704
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GACCCGTGTCCGACGGTTCGTACAGGATGATGCACACATATTCTGTAGAGTGGATCAGGT 663
Query 705 TG-AGGAAGAAGTGAAGGGTGTGTTGGATTTCATTGACTATGTTTACAGAA-TATTTGGG 762
|| || ||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 664 TGGAG-AAGAAGTGAAGGGTGTGTTGGATTTCATTGACTGTGTTTACA-AAGTATTTGGG 721
Query 763 TTTACCTATGAACTAACGCTTTCAACG--AG-GCCA-AAGGATCACATTGGAGATTTGGA 818
||||||||||| |||| |||||||||| || | | ||| | | | |||||||||||||
Sbjct 722 TTTACCTATGAGCTAAAGCTTTCAACGCCAGAGA-AGAAGTA-C-C-TTGGAGATTTGGA 777
Query 819 AACATGGGCTAAAGCTGAAAATGATCTTGAAAAAGCTCTAGATGATTTTGGAAAGCCATG 878
|||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||||||
Sbjct 778 AACATGGGTTAAAGCTGAAAAGGATCTTGAAAAAGCGCTAGATAATTTTGGAAAGCCATG 837
Query 879 GGTTATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACATAACAGTGTCTGA 938
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 838 GGTTATAAACAAAGGAGACGGTGCATTTTACGGCCCAAAGATAGACATAACAGTGTCGGA 897
Query 939 TGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAGCTTGATTTTCAACTTCCGGCTTG 998
||| | ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 898 TGCAATGAAAAGGAAATTCCAGTGTGCTACTTTACAGCTTGATTTTCAACTTCCGGCTTG 957
Query 999 CTTCAAACTGAAATACCTAAGTGaaaaaaaCGAAATGGAG-GCACCTGTGATGATACATA 1057
|||||||||||||||| ||| | |||||||||||| |||| | |||||||||||||||||
Sbjct 958 CTTCAAACTGAAATACATAACTAAAAAAAACGAAAAGGAGAG-ACCTGTGATGATACATA 1016
Query 1058 GTGCGGTGTTGGGATCTATTGAGCGTATGTTTGCCATATTGTTGGAACATTACAAAGGAA 1117
| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1017 GAGCGGTGTTGGGATCTGTTGAGCGTATGTTTGCCATATTGTTGGAGCATTACAAAGGAA 1076
Query 1118 TTTGGCCCTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGCTCTCTTTCAGAGGATTGTA 1177
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1077 TCTGGCCTTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGCTCTCTTTCAGAGGATTATA 1136
Query 1178 GTTCCTATGCCAAACAGGTACAAAAACAGATT-AATGAAG-TCGGGTACTATGTTGATAT 1235
|||||||||| ||||||||||||||||||||| || |||| | |||||||||||||||||
Sbjct 1137 GTTCCTATGCAAAACAGGTACAAAAACAGATTCAA-GAAGCT-GGGTACTATGTTGATAT 1194
Query 1236 TGATGAAAGTGACAGAAGCCTCCGTAAAAAGGTGGCAGATGCTCGGGATGCACCATACAA 1295
||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||
Sbjct 1195 TGATGAAAGTGACAGAAGCATCTGTAAAAAGGTGGCAGATGCTCGGGCTGCACCATACAA 1254
Query 1296 CTACATACTGGTCGTAGGTCAAAAAGAGGTTGCAACTGGACAGGTGACAGTTCGGCTCAG 1355
||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||
Sbjct 1255 CTACATACTGGTCGTAGGTCAAAAAGAGGCTACAACGGGACAGGTGACAGTTCGGCTCAG 1314
Query 1356 AGAGGACCCTGAAGGCCGTAAAGACTTGCCAGAGATGAGCATCGAAAGTTTGCTTGATGA 1415
||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1315 AGAGGACCCTGCAGGCCGTAAAGACTTGCCAGAGATGAGCATCGACAGTTTGCTGGATGA 1374
Query 1416 ATTCAAGTTCAAGACAGTCAACTTCCTCTGAGATCCGAT--GTTTATGGTTTAAAATTTC 1473
|||||||||||||||| ||||||| |||||||||||||| |||||||| |||||| |||
Sbjct 1375 ATTCAAGTTCAAGACAATCAACTTTCTCTGAGATCCGATCTGTTTATGGGTTAAAAATTC 1434
Query 1474 ATTTTTCTGTTGATGATGAATGTATTTCTTTTATAATG---GTCTTTTTCATTGTACCAA 1530
||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1435 ATTTTCCTGTTGATGATGAATGTATTTCTTTTATAATATAAGTCTTTTTCGTTGTACCAA 1494
Query 1531 GACACATTTTGGAATAAAATGTACTATTGAAGTAT 1565
|||| |||||||||||||| ||||| ||||| |||
Sbjct 1495 GACATATTTTGGAATAAAAGGTACTGTTGAAATAT 1529
> Ahg920738 jgi|Araly1|920738|scaffold_102019.1
Length=1905
Score = 669 bits (362), Expect = 0.0
Identities = 666/807 (83%), Gaps = 43/807 (5%)
Strand=Plus/Plus
Query 575 AATTACCCATTAGAA-TGGCCGAATTTGGAGTGTTACACCGAAATGAGGAC-AGTGGAGC 632
|||||||||||| || |||| || |||||| ||| | | |||||||| | |||| ||
Sbjct 1035 AATTACCCATTA-AACTGGCTGACTTTGGACCGTTGTATCAAAATGAGG-CAAGTGAAG- 1091
Query 633 A-CTTGGTGGAATGACCCGTGTCCGACGGTTTGTACAGGATGATGCACACATATTCTGTA 691
| ||| |||| ||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1092 ATCTTAGTGGGTTGACCCGTGTCCGACAGTTCCAACAGGATGATGCACACATATTCTGTA 1151
Query 692 GAGTGGA-TCAGGTTGAGGAAGAAGTGAAG-GGTGTGTTGGATTTCATTGACTATGTTTA 749
| | || |||||| | ||||||||| || ||| | |||||||| ||||||||| |||
Sbjct 1152 GCG-AGACGCAGGTTAAAGAAGAAGTG-AGAGGTATATTGGATTTTGTTGACTATGCTTA 1209
Query 750 CAGAATATTTGGGTTTACCTATGAACTAACGCTTTCAACGAGGCCAAAG-GATCACATTG 808
|| || |||||||||||||||||| |||| ||||||||||||||||||| || || |||
Sbjct 1210 CACAAAATTTGGGTTTACCTATGAGCTAAAGCTTTCAACGAGGCCAAAGAAAT-ACCTTG 1268
Query 809 GAGATTTGGAAACATGGG-CTAAAGCTGA-AAATGATCTTGAAAAAGCTCTAGATGATTT 866
|||||||||||| ||||| | |||||||| ||| ||||||||| |||| ||| |||||||
Sbjct 1269 GAGATTTGGAAAAATGGGAC-AAAGCTGAGAAA-GATCTTGAAGAAGCACTAAATGATTT 1326
Query 867 TGGAAAGCCATGGGTTATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACAT 926
||||||| ||||||||| ||| |||||||||| | ||||||||||||||||||||||||
Sbjct 1327 TGGAAAGACATGGGTTAAAAACAAAGGAGACGGGGAATTTTATGGCCCAAAGATAGACAT 1386
Query 927 AACAGTGTCTGATGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAGCTTGATTTTCA 986
|||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1387 AACAGTGTATGATGCAATGAAAAGGAAATTCCAGTGTGCTACTATACAGCTTGATTTTCA 1446
Query 987 ACTTCCGGCTTGCTTCAAACTGAAATACCTAAG-TGaaaa--aaaCGAA-ATGGAG-GCA 1041
||||| | | ||||||||||| |||| | || ||| | ||||| | || ||| |
Sbjct 1447 CCTTCCTGATCGCTTCAAACTGGAATAT-TCAGCTGAGGATGAAACGGAGATAGAGAGTT 1505
Query 1042 CCTGTGATGATACATAGTGCGGTGTTGGGATCTATTGAGCGTATGTTTGCCATATTGTTG 1101
| |||| |||||||||| ||||||||||| ||| |||||||| | |||||||||||||||
Sbjct 1506 C-TGTGCTGATACATAGAGCGGTGTTGGGCTCTGTTGAGCGTCTTTTTGCCATATTGTTG 1564
Query 1102 GAACATTACAAAGGAAT-TTGGCCCTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGCTC 1160
||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1565 GAACAGTACAAAGGAAAATTG-CCCTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGCTC 1623
Query 1161 TCTTTCAGAGGATTGTAGTTCCTATGCCAAACA-GGT-ACAAAAACAGA-TTAATGAAGT 1217
| |||||||||||| | ||||||| || ||||| ||| | | | | || || | ||||
Sbjct 1624 TGTTTCAGAGGATTCTCGTTCCTACGC-AAACAAGGTGAGAGAT-C-GAATTCACGAAG- 1679
Query 1218 CGGG-TACTATGTTGATATTGATGA-AAGTGACAGAAGCC-TCCGTAAAAAGGTGGCA-G 1273
| || |||||||||||| |||| | || || |||| || || || | |||||| || |
Sbjct 1680 CTGGCTACTATGTTGATGTTGAC-ACAACAGATAGAA-CCGTCAGTGAGAAGGTG-CAAG 1736
Query 1274 ATGCTCGGGATGCACCA-TACAACTACATACTGGTCGTAGGTCAAAAAGAGGTT-GCAAC 1331
| |||| || ||||| | ||||||||||| |||||||| ||| | |||||| | | |||
Sbjct 1737 AAGCTCAGGTTGCAC-AGTACAACTACATTCTGGTCGTGGGTGATGAAGAGGCTAG-AAC 1794
Query 1332 TGGACAGGTGACAGTTCGGCTCAGAGA 1358
||||||||||| ||| |||| |||||
Sbjct 1795 GGGACAGGTGACTGTTTGGCTAAGAGA 1821
Score = 348 bits (188), Expect = 8e-95
Identities = 234/257 (91%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 315 GGTTAATCATGTCTTGTGGGACATGAATAGGCCCCTGGAAGGTGATTGTTCCTTAGAGAT 374
|||| |||||||| || |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 GGTTGATCATGTCCTGCGGGACATGAATAGGCCCCTGGAAGGTGATTGTTCGGTAGAGAT 60
Query 375 TTTCGGATTTGACAGCGACCAAGGCCGTAATACTTTCTGGCATTCTAGCGCCCACATTCT 434
|||||||||||| |||| |||||||||| ||||||||||||||||||| || ||||||||
Sbjct 61 TTTCGGATTTGATAGCGTCCAAGGCCGTGATACTTTCTGGCATTCTAGTGCTCACATTCT 120
Query 435 AGGCCAGGCTCTCGAGCAGGAGTATGGATGCAAGCTATGTATTGGACCCTGCGAACCCAG 494
||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct 121 AGGCCAGGCTCTCGAGCAGGAGTATGGATGCAAGCTATGCATTGGACCCTGCAAAACCAT 180
Query 495 AGATGAAGGCTTCTATTACGATTCACTTTATTATGGCGAGCTGGGATTAAACGACAATCA 554
|||||| || |||||||||||| | ||||||||||||| ||||| ||||||||| ||||
Sbjct 181 AGATGAGGGTTTCTATTACGATGCGTTTTATTATGGCGATCTGGGCTTAAACGACGATCA 240
Query 555 TTTTCCAAACATCGAAG 571
||||||| |||||||||
Sbjct 241 TTTTCCACACATCGAAG 257
> Ahg942264 jgi|Araly1|942264|scaffold_602808.1
Length=2182
Score = 588 bits (318), Expect = 5e-167
Identities = 646/798 (81%), Gaps = 47/798 (6%)
Strand=Plus/Plus
Query 577 TTACCCATTAGAATGGCCGAATTTGGAGTGTTACACCGAAATGAGGAC-AGTGGAGCACT 635
||||| || ||| |||| || ||||||||||||||||| ||||||| | |||||||||||
Sbjct 1302 TTACCTATGAGACTGGCTGACTTTGGAGTGTTACACCGCAATGAGG-CAAGTGGAGCACT 1360
Query 636 TGGTGGAATGACCCGTGTCCGACGGTTTGTA-CAGGATGATGCACACATATTCTGTAGAG 694
| |||| |||| || ||||||||| || | ||||||||||||||||| ||||||| |
Sbjct 1361 TAGTGGGTTGACTCGCGTCCGACGG-TTCCAGCAGGATGATGCACACATCTTCTGTACAA 1419
Query 695 TGGATCAGGTTGAGGAAGAAGTGAAGGGTGTGTTGGATTTCATTGACTATGTTTACAGAA 754
|| |||||| |||| |||||| ||||||||||||| |||||||||||||| |||| ||
Sbjct 1420 CAGAACAGGTTAAGGATGAAGTGCAGGGTGTGTTGGAGTTCATTGACTATGTGTACA-AA 1478
Query 755 -TATTTGGGTTTACCTATGAACTAACGCTTTCAACGAGGCCAAAGGA-TCACATTGGAGA 812
| ||||||||||||||||| |||| ||||||||||||||| || | | || |||||||
Sbjct 1479 GTTTTTGGGTTTACCTATGAGCTAAAACTTTCAACGAGGCCAGAGAAGT-ACCTTGGAGA 1537
Query 813 TTTGGAAACATGGGCTAAAGCTGAAAATGATCTTGAAA-AAGCTCTAGATGATTTTGGAA 871
||||||||||||| |||||||||| |||| | ||| ||||| |||| | ||||||||
Sbjct 1538 ATTGGAAACATGGGATAAAGCTGAAGCGGATC-TCAAAGAAGCTATAGAAGCTTTTGGAA 1596
Query 872 AGCCATGGGT-TATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACATAACA 930
|||||| || | | || |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1597 AGCCATTAGTGT-TGAATGAAGGAGATGGTGCATTTTATGGCCCAAAGATAGACATCACA 1655
Query 931 GTGTCTGATGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAGCTTGATTTTCAACTT 990
|| |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1656 GTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAGCTTGATTTTCAACTT 1715
Query 991 CCGGCTT-GCTTCAAACT-GAAATAC-CTAAG-TGaaaaa-aa-CGAA-ATGGAGGCA-C 1042
||| || ||||||| || | ||||| | | | ||| | || |||| | || | | |
Sbjct 1716 CCGA-TTCGCTTCAA-CTTGGAATACGC-A-GCTGAGGATGAAGCGAAGAAGG-GTAAAC 1770
Query 1043 CTGTGATGATACATAGTGCGGTGTTGGGATCTATTGAGCGTATGTTTGCCATATTGTTGG 1102
|||| ||||||||||| || |||||||||||| | || ||||||||||||||||||||||
Sbjct 1771 CTGTAATGATACATAGAGCCGTGTTGGGATCTGTGGAACGTATGTTTGCCATATTGTTGG 1830
Query 1103 AACATTACAAAGGAATTTGGCCCTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGCTCTC 1162
| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||| || |
Sbjct 1831 AGCATTACAAAGGAAAATGGCCCTTCTGGATTAGTCCGCGCCAGGCCATAGTTTG-TC-C 1888
Query 1163 T-T-TCAGAGGATTGT-AGTTCCTATGCC-AAACAGGTACAAAAACAGATTAATGAAG-T 1217
| | |||||| | | | || ||||| ||| |||| ||||| | ||| |||| | |
Sbjct 1889 TATATCAGAGAAATCTCAGAAA-TATGCAGAAA-AGGTGCAAAAGGAAATTCATGATGCT 1946
Query 1218 CGGGTACTATGTTGATATTGA-TGAA-AGTGACAGAA-GCCTCCG-TAAAAAGGTG-GCA 1272
|||| |||| | ||| || | || || |||||| | | | |||||||||| | |
Sbjct 1947 -GGGTTCTATATCGATGCGGACTTAACAG--ACAGAAAGA-TA-GATAAAAAGGTGCG-A 2000
Query 1273 GATGCTCGGGATGCACCA-TACAACTACATACTGGTCGTAGGTCAAAAAGAGGTTGCAAC 1331
|| |||| | ||||| | ||||||||||| |||||||| ||| ||| |||| ||| ||
Sbjct 2001 GAAGCTCAGCTTGCAC-AGTACAACTACATTCTGGTCGTGGGTGAAACTGAGGCTGCTAC 2059
Query 1332 TGGACAGGTGACAGTTCG 1349
|||||||||| |||||
Sbjct 2060 AGGACAGGTGAGTGTTCG 2077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58620887055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5