BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17970.1
Length=1505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312759 jgi|Araly1|312759|fgenesh1_pm.C_scaffold_1001539 553 2e-156
> Ahg312759 jgi|Araly1|312759|fgenesh1_pm.C_scaffold_1001539
Length=1086
Score = 553 bits (299), Expect = 2e-156
Identities = 345/368 (94%), Gaps = 0/368 (0%)
Strand=Plus/Plus
Query 866 GATGAGGATGCTCCAGAATGGTTTTGTAATGGGAAGAATAACAGATTCCCGTGATAACTA 925
||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 717 GATGATGATGCTCCAGAATGGTTTCGTAATGGGAAGAATAACAGATTCCCGTGATCACTA 776
Query 926 CCACGAATTGAGGCTCGATGTTGATAGCATGTCATACGAGCAACTTCTTGAGCTTGGTGA 985
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 777 CCATGAATTGAGGCTCGATGTTGATAGCATGTCATACGAGCAACTTCTTGAGCTTAGTGA 836
Query 986 TAGAATTGGTTATGTGAATACTGGACTAAAAGAAAGCGAGATACATCGTTGTCTTGGGAA 1045
||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 837 TAGGATTGGTTATGTGAATACTGGACTTAAAGAAAGCGAGATACATCGCTGTCTTGGGAA 896
Query 1046 AATCAAACCATCCGTATCACATACTCTTGTTGATAGAAAATGTAGCATCTGTCAGGATGA 1105
||||| ||| ||| ||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 897 AATCACACCCTCCATATCACATACTCTTGGTGATAGAAAATGTAGCATTTGTCAGGATGA 956
Query 1106 GTATGAGAGAGAGGATGAGGTTGGGGAATTGAACTGTGGACACAGCTTTCATGTCCATTG 1165
||||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||||
Sbjct 957 GTATGAGAGTGAGGATGAGGTTGGGAAATTAAACTGTGGACACAGCTTTCATGTTCATTG 1016
Query 1166 CGTGAAACAATGGCTTTCGAGGAAGAATGCTTGTCCGGTCTGTAAGAAGGCAGCATATGG 1225
||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 1017 CGTAAAACAATGGCTATCGAGGAAGAATGCTTGCCCGGTCTGTAAGAAGACAGCATACGT 1076
Query 1226 CAAGCCTT 1233
||||||||
Sbjct 1077 CAAGCCTT 1084
Score = 501 bits (271), Expect = 6e-141
Identities = 543/659 (82%), Gaps = 80/659 (12%)
Strand=Plus/Plus
Query 227 CCACGTCGTTCTTCCGATTTCACAACCTAATCGCTTCTGTAACTCCGCAATGTCTTCCTT 286
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 69 CCATGTCGTTCTTCCGATTTCTCAACCTAATCGGTTCTGTAACTCCGCAATGTCTTCCTT 128
Query 287 CTTTCCCCTCCCGACTTCCTCCTCCAACGAAAGCACGAGGAAGAAACCGTACCAAACGTC 346
||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 129 CTTTCTCCTCCCGACTTCCTCCTCCAACGAAACCACCAGGAAGAAACCGTACCAAACGTC 188
Query 347 GTCGTTTCGAGGGATGGGTTGCTATGCCgcagcagcagcagcagcTCAAGAGGTTTCTGT 406
||||||||| || ||||||||| | | || ||||||||||||||||| |||||||||||
Sbjct 189 GTCGTTTCGTGGTATGGGTTGC-A--CTGCCGCAGCAGCAGCAGCTCAGGAGGTTTCTGT 245
Query 407 TCCCTCCGTCATTCGCTAC-TCCGCGGATTTGGATGCCagaattagaaaagataagaaga 465
||||||||| ||||||| | || || |||| |||||||||||| ||||||||| |
Sbjct 246 TCCCTCCGTGATTCGCT-CATCTGCAGATTGGGATGCCAGAATCAGAAAAGAT------A 298
Query 466 agaagaagcataagcataagaaaaagaaaaagaagaataaaggaagctacgaagaTGGTT 525
|||||||| |||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 299 AGAAGAAG---AAGCAT------AAGAAAAAGAAGAACAAAGGAAGCTACGAAGATGGTT 349
Query 526 CGATTAGGATTTTAAGCGAAG--A-AG-C--T-A-----G-AG--ACGT---TA-T--TG 564
|||||||||| |||| ||||| | || | | | | | ||| | | ||
Sbjct 350 CGATTAGGATCTTAAACGAAGCTAGAGACGTTGATGGTGGTGGTTGCGTCGCGATTCCTG 409
Query 565 ATGTTTGGTGCAGACCTGGATTAGGCTTCTCCACGGATGCTGTAATTGGTCGATCGGTTG 624
||||||||||| |||||||| |||||||||| |||||||||||| ||| ||||||||| |
Sbjct 410 ATGTTTGGTGCGGACCTGGACTAGGCTTCTCGACGGATGCTGTAGTTGATCGATCGGTCG 469
Query 625 ATCCTCCTCGGGGAAGGAATATTCCGTCGTCTCGTCGCAAAATTGATGTGGATAACAACA 684
||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 470 ATCCTCCTCGGAGAAAGAATATTCCGTCGTCTCGTCGCAAAATTGATGTGGAT---AAC- 525
Query 685 ATTATAATCACACACTGGGTTCTTCTGTTCTTCCCATTCGGTTTCTCAATCAAGAAACTC 744
|| |||||| ||||||||||| || | |||||||| |||
Sbjct 526 -----AA-CACACA--GGGTTCTTCTG----------TC-G-------ATCAAGAATCTC 559
Query 745 ATTCTCATGATATCTTCAACTCTGATTCTACTTTTGTGACATCATCACGCGCTGAACCAA 804
||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 560 ATTCTCATGCTTTCTTCAACTCTGATTCGACTTTTGTGACATCATCACGCGCTGAACCAA 619
Query 805 CGATGTTGTCAAGTAGATGTCGTGGCCATCTTCCACGCTCTTACCCTGATGATCTTACC 863
| | | ||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 620 C-A-------A-GTAGATGTCGTGGCCATCTTCGACGCTCTTACCGTGATGATCTTACC 669
Score = 121 bits (65), Expect = 2e-26
Identities = 69/71 (97%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 129 ATGTCTTCTACAACAATCGGCGAGCACATCAGACTCCGACGAGCTAGAAACCAAACAATC 188
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCGACAACAATCGGCGAACACATCAGACTCCGACGAGCTAGAAACCAAACAATC 60
Query 189 CGTCATCTCCA 199
|||||||||||
Sbjct 61 CGTCATCTCCA 71
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56335472355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5