BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17980.1
Length=2667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472012 jgi|Araly1|472012|fgenesh2_kg.1__1966__AT1G17980.1 3792 0.0
Ahg312763 jgi|Araly1|312763|fgenesh1_pm.C_scaffold_1001543 141 3e-32
> Ahg472012 jgi|Araly1|472012|fgenesh2_kg.1__1966__AT1G17980.1
Length=2404
Score = 3792 bits (2053), Expect = 0.0
Identities = 2305/2423 (95%), Gaps = 31/2423 (1%)
Strand=Plus/Plus
Query 255 aaaaaagagaggaaaagagcaaagTAAGTAGGATAGATGGCTAGTGTCCAGCAAAATGGG 314
|||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1 AAAAAAGAGAGGAAAAGAACAAAGTAAGTAAGATCGATGGCTAGTGTCCAGCAAAATGGG 60
Query 315 CAACGGTTTGGCGTTTCAGAACCTATCTCTATGGGAGGACCAACGGAGTTTGATGTGATC 374
||| |||||||| || |||||||||||||| ||||||||||||||||| ||||||| |||
Sbjct 61 CAAAGGTTTGGCATTACAGAACCTATCTCTTTGGGAGGACCAACGGAGCTTGATGTCATC 120
Query 375 AAGACAAGAGAGCTCGAGAAGCACTTGCAAGATGTTGGATTGTACGAGAGCAAGGAGGAA 434
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 AAGACTAGAGAGCTCGAGAAGCACTTGCAAGATGTTGGATTGTACGAGAGTAAGGAGGAA 180
Query 435 GCTGTTAGAAGGGAGGAGGTTCTGGGGATACTAGATCAGATTGTAAAAACATGGATTAAA 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTGTTAGAAGGGAGGAGGTTCTGGGGATACTAGATCAGATTGTAAAAACATGGATTAAA 240
Query 495 ACAATCAGCCGCGCCAAAGGGTTGAATGATCAGCTGCTTCATGAGGCGAATGCAAAGATA 554
|||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||
Sbjct 241 ACAATCAGCCGCGCCAAAGGGTTGAATGATGAGCTGCTTCATGTGGCGAATGCGAAGATA 300
Query 555 TTTACTTTCGGTTCTTATCGACTAGGGGTACATGGACCTGGTGCTGATATAGACACTTTA 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTACTTTCGGTTCTTATCGACTAGGGGTACATGGACCTGGTGCTGATATAGACACTTTA 360
Query 615 TGTGTGGGACCTAGACATGCAACTAGAGAAGGTGATTTCTTTGGTGAGCTACAAAGAATG 674
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 TGTGTGGGACCTAGACATGCAACTAGAGAAGGTGATTTCTTTGGTGAGCTACAAAGGATG 420
Query 675 CTGTCAGAAATGCCGGAAGTAACTGAACTGCACCCTGTGCCTGATGCTCATGTTCCATTG 734
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 421 TTGTCAGAAATGCCTGAAGTAACCGAACTGCACCCCGTGCCTGATGCTCATGTTCCATTG 480
Query 735 ATGGGATTCAAACTTAATGGAGTTTCTATAGATCTCCTTTATGCACAACTTCCACTCTGG 794
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 ATGGGATTCAAACTTAATGGAGTTTCGATAGATCTCCTTTATGCACAACTTCCACTCTGG 540
Query 795 GTTATACCTGAGGACTTAGATTTATCACAGGACTCCATTCTACAGAATGCTGATGAGCAA 854
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTATACCTGAGGACTTAGATATATCACAGGACTCCATTCTACAGAATGCTGATGAGCAA 600
Query 855 ACTGTTCGAAGTCTCAACGGTTGTAGAGTTACTGACCAAATCTTGCGTCTGGTTCCAAAC 914
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACTGTTCGAAGCCTCAACGGTTGTAGAGTTACTGACCAAATCTTGCGTCTGGTTCCAAAC 660
Query 915 ATTCAGAATTTCAGAACAACATTAAGATGCATGAGATTTTGGGCCAAACGACGTGGAGTA 974
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 661 ATTCAGAATTTCAGGACAACATTAAGATGCATGCGATTTTGGGCCAAACGACGTGGAGTA 720
Query 975 TACTCTAATGTCTCGGGATTTCTTGGTGGTATAAACTGGGCATTGCTTGTAGCTCGGATA 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TACTCTAATGTCTCGGGATTTCTTGGTGGTATAAACTGGGCATTGCTTGTAGCTCGGATA 780
Query 1035 TGTCAACTTTATCCTAACGCCCTCCCTAATATTTTAGTGTCTCGGTTCTTTAGGGTCTTC 1094
|||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| |
Sbjct 781 TGTCAACTTTATCCTAACGCCCTCCCAAATATGTTAGCGTCTCGGTTCTTTAGGGTCTAC 840
Query 1095 TATCAATGGAATTGGCCGAA-CGCCATTTTTCTTTGTTCTCCGGATGAAGGATCCCTT-G 1152
|||||||| ||||||||| | || || ||||||||||| ||||||||||||| || |
Sbjct 841 AATCAATGGCGTTGGCCGAATC-CCGTTCTTCTTTGTTCTATGGATGAAGGATCC-TTCG 898
Query 1153 GTCTTCAAGTTTGGGATCCTAGAATAAACCCAAAGGATCGGTTGCATATAATGCCCATCA 1212
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 899 GTCTTCAAGTTTGGGATCCTAGAAGAAACCCAAAGGACCGGTTGCATATAATGCCCATCA 958
Query 1213 TTACTCCTGCTTATCCTTGTATGAACTCTAGTTACAATGTCTCTGAAAGTACATTGCGGA 1272
||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 959 TTACTCCCGCTTATCCTTGTATGAACTCCAGTTACAATGTCTCTGCAAGTACATTGCGGA 1018
Query 1273 TTATGAAAGGAGAGTTTCAGAGAGGAAACGAAATATGTGAGGCTATGGAATCAAACAAAG 1332
|||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1019 TTATGACAGGAGAGTTTCAGAGAGGAAAAGAAATATGTGAGGCTATGGAAGCAAACAAAG 1078
Query 1333 CTGACTGGGATACCCTTTTTGAGCCATTTGCATTCTTTGAAGCGTATAAAAACTATCTAC 1392
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1079 CTGATTGGGATACCCTTTTTGAGCCATTTGCATTCTTTGAAGCGTATAAAAACTATCTTC 1138
Query 1393 AGATAGACATTTCTGCTGCAAATGTCGATGATCTAAGAAAATGGAAAGGCTGGGTTGAGT 1452
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AGATAGACATTTCCGCTGCAAATGTCGATGATCTAAGAAAATGGAAAGGCTGGGTTGAGT 1198
Query 1453 CACGCCTCCGCCAGCTCACACTGAAGATCGAGAGACATT-TTAA-A-ATGCTTCATTGCC 1509
|||||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||
Sbjct 1199 CACGCCTCCGCCAGCTCACACTGAAGATCGAGAGACATACTTATGATATGCTTCAGTGCC 1258
Query 1510 ACCCTCATCCCCATGATTTTCAAGACACATCCCGGCCACTCCATTGCTCTTACTTCATGG 1569
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1259 ACCCTCATCCCCATGATTTTCAAGACGCATCCCGGCCACTCCATTGCTCTTACTTCATGG 1318
Query 1570 GTCTGCAACGTAAACAAGGAGTTCCAGCAGCAGAAGGCGAGCAATTCGATATCAGAAGAA 1629
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1319 GTCTGCAACGTAAACAAGGAGTTCCAGCAGCAGAAGGCGAGCAATTTGATATCAGAAGAA 1378
Query 1630 CCGTTGAGGAGTTTAAACACACTGTCAACGCTTACACATTGTGGATTCCAGGGATGGAGA 1689
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1379 CCGTTGAGGAGTTTAAACACACTGTCAACGCTTACACATTGTGGATTCCCGGGATGGAGA 1438
Query 1690 TTAGTGTTGGCCATATAAAACGGAGAAGCTTACCTAATTTTGTGTTTCCTGGTGGAGTTA 1749
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1439 TTAGTGTCAGCCATATAAAACGGAGAAGCTTACCTAATTATGTGTTTCCTGGTGGAGTTA 1498
Query 1750 GACCTTCACATACCTCTAAAGGAACATGGGACAGCAATCGCCGTTCAGAGCACAGAAATT 1809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GACCTTCACATACCTCTAAAGGAACATGGGACAGCAATCGCCGTTCAGAGCACAGAAATT 1558
Query 1810 CTTCTACATCAAGTGCACCAGCTGCTACTACCACTACTACCGAAATGAGTTCTGAAAGTA 1869
|||||||||||||||||| |||||||||||| || ||||| |||||||||||||||||||
Sbjct 1559 CTTCTACATCAAGTGCACTAGCTGCTACTACTACCACTACTGAAATGAGTTCTGAAAGTA 1618
Query 1870 AAGCTGGTTCTAACAGTCCAGTTGATGGGAAGAAGAGAAAATGGGGAGATAGTGAAACAC 1929
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1619 AAGCTGGTTCTAACAGTCCAGTTGATGGGAAGAAGAGAAAATGGGGAGATAATGAAACAC 1678
Query 1930 TCACCGATCAGCCAAGGAACTCTAAACACATTGCTGTTTCAGTGCCTGTAGAGAATTGTG 1989
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TCACCGATCAGCTAAGGAACTATAAACACATTGCTGTTTCAGTGCCTGTAGAGAATTGTG 1738
Query 1990 AAGGCGGGAGTCCAAATCCATCTGTTGGATCAATTTGTTCAAGTCCTATGAAAGATTATT 2049
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1739 AAGGCGGGAGTCCAAATCCATCTGTTGGATCGATTTGTTCAAGTCCTATGAAAGATTATT 1798
Query 2050 GTACAAACGGTAAATCTGAGCCTATTAGTAAGGATCCACCAGAAAATGTTGTTGCTTTCA 2109
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1799 GTACAAACGGTAAATCTGAGCCTATTAGTAAGGATCCACCAGAGAATGTTGTTGCTTTCA 1858
Query 2110 GTAAGGATCCACCAGAGAGTCTTCCGATAGAAAAGATAGCCACTCCTCAAGCTC--A-T- 2165
||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1859 GTAAGGAACCAGCAGAGAGTCTTCCGATAGAAAAGATAGCCACTCCTCAAGCTCCTAGTC 1918
Query 2166 --GAAACTGAGGAGCTTGAAGAAAGTTTTGATTTTGGAAACCAAGTGATTGAGCAGATAT 2223
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1919 AAGAAACTGAGGAGCTTGAAGAAAGTTTTGATTTTGGAAATCAAGTGGTTGAGCAGATAT 1978
Query 2224 CTCATAAAGTTGCAGTCCTGTCTGCTACTGCAACTATACCTCCATTCGAAGCTACTTCAA 2283
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1979 CTCATAAAGTTGCAATCCTGACTGCTACTGCAACTATACCTCCATTCGAAGCTGCTTCAA 2038
Query 2284 ATGGCTCTCCTTTCCCTTATGAAGCAGTGGAAGAACTTGAGGTTCTTCCCACGCGACAGC 2343
|||||||| | |||||| | ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2039 ATGGCTCTGCATTCCCTAACGAAGCAGTGGAAGAACTTGAGGTTCTTCCCATGCGACAGC 2098
Query 2344 CCGATGCGGCACATAGACCTTCAGTACAACAGCGAAAACCGATAATCAAATTGAGCTTCA 2403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 CCGATGCGGCACATAGACCTTCAGTACAACAGCGAAAACCGATAATCAAATTGAGCTTCA 2158
Query 2404 CGTCTCTAGGCAAAACCAATGGCAAGTAATAATGGCTTTTCCCTACATTGCCAAGAATCT 2463
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2159 CGTCTCTAGGCAAAACCAATGGCAAGTAATAATGGCTTTTCCCTACATTGTCAAGAATCT 2218
Query 2464 CAGAGCACTTACGGAAATTCGAGATGTTAAGTTGAGGGGTTCTTGTTACTTTATGTCTTA 2523
|| |||||| | | | | ||||||||||||||||||||||||||||||||
Sbjct 2219 TAG--CACTTA------T--G---T-T-AAGTTGAGGGGTTCTTGTTACTTTATGTCTTA 2263
Query 2524 TATTTATATGCTTTTCTTAGATGTTGCATGATCTCATGTAAAACTCGTTTGGATAAGATT 2583
|||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2264 TATT-ATATGCTTCTCTTAGATGTTCCATGACCTCATGTAAAACTCGTTTGGATAAGATT 2322
Query 2584 AATGTAATGTGTTCTTGTCTATGGATCCCAAACACTTTTTCTGTCATAAATAAAAGTCTG 2643
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 2323 AATGTAATGTGTTCTTGTCTATGGATCCCAAACACTTTTTCTGTCCTGAACAAAAGTCTG 2382
Query 2644 GGTTGAGTT-TACTTCACATATA 2665
||||||| | ||||||| |||
Sbjct 2383 CATTGAGTTCT-CTTCACAGATA 2404
> Ahg312763 jgi|Araly1|312763|fgenesh1_pm.C_scaffold_1001543
Length=1026
Score = 141 bits (76), Expect = 3e-32
Identities = 89/95 (94%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 86 TGGAGAAGGAATCTGATTTGACTGCAACGGAGAAACCAAATAACAAGCACGCGGCTGATT 145
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2 TGGAGAAGGAATCTCATTTGACTGCAAAGGAGAAACCAAATAACAAGCACGCGGCTGATT 61
Query 146 CGTTTTCCAGCGAGGATTTGGTCTCACGCGGAGAA 180
|||||||||||||||| |||||| ||| ||| |||
Sbjct 62 CGTTTTCCAGCGAGGAATTGGTCCCAC-CGGTGAA 95
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100596337045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5