BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18000.1
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472014 jgi|Araly1|472014|fgenesh2_kg.1__1968__AT1G18000.1 2409 0.0
> Ahg472014 jgi|Araly1|472014|fgenesh2_kg.1__1968__AT1G18000.1
Length=1628
Score = 2409 bits (1304), Expect = 0.0
Identities = 1506/1602 (94%), Gaps = 19/1602 (1%)
Strand=Plus/Plus
Query 13 TGTTTTGTTAGAAAATTAAGTTTTAGTTAAT-ATTTATTCCCATGAAAATGTCCGCTACT 71
||||||||||||||||||| ||||| |||| |||| |||||||||||||||||| ||
Sbjct 1 TGTTTTGTTAGAAAATTAATTTTTA-ATAATCATTTCTTCCCATGAAAATGTCCG---CT 56
Query 72 ACTAAAGAAAGAATCGTAACAGACGGATCACAAACAGTCACAGATCCGAGCCCTGTTTTG 131
||||||| ||||||||||||||||||||||| | | ||| ||||||| |||||| ||||
Sbjct 57 ACTAAAGGAAGAATCGTAACAGACGGATCAC--A-A-TCAAAGATCCGTGCCCTGCTTTG 112
Query 132 AGTTTACGAGAA-GAATATTAAAATTCTCATCTTTAACCATTTTATCCGATCATGAATGT 190
|||||||||||| ||| |||||||||||||||||| ||| |||| ||||||||||||||
Sbjct 113 AGTTTACGAGAAGGAA-ATTAAAATTCTCATCTTTCACCTTTTTTTCCGATCATGAATGG 171
Query 191 GAGAGACGAGGGAAA-AACTACGGCGGAGAAACACGGCGGAGGAGAGGAGAATAAATCAC 249
|| | |||| ||||| || | |||||||||| |||||||||||||| || | |||| | |
Sbjct 172 GAAAAACGA-GGAAATAAGTCCGGCGGAGAATCACGGCGGAGGAGAAGATATTAAACCCC 230
Query 250 CGG---AGAACAAATGGCGATTTAATTCTCCTCTAGCTCAAGTGAGCTTAATGGGATTCG 306
||| | || ||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 231 CGGAAAATAAAAAATGGCGATTTAATTCTCCTTTTGTTCAAGTGAGCTTAATGGGATTCG 290
Query 307 TTTGTTTCTGTTGTCCAGGAATGTTCAACGCTCTCTCCGGCATGGGAGGCGGTGGTCAAG 366
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TCTGTTTCTGTTGTCCAGGAATGTTCAACGCTCTCTCCGGCATGGGAGGCGGTGGTCAAG 350
Query 367 TAGATCCAACCGCTGCTAACAACGCTAACACCGCCGTTTACACCGCTTTCACCGTTTTCG 426
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TAGATCCCACCGCCGCTAACAACGCTAACACCGCCGTTTACACCGCTTTCACCGTTTTCG 410
Query 427 GCCTTTTAGGCGGCGGGTTTTACAACGTCCTCGGTCCACGGCTCACGTTAGCCGCTGGAT 486
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GCCTTTTAGGCGGCGCGTTTTACAACGTCCTCGGTCCACGGCTCACGTTAGCCGCTGGAT 470
Query 487 GTTCGACTTACGTACTCTACGCCGGATCTTTCCTCTACTACAACCATCACCACCACCAAG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GTTCGACTTACGTACTCTACGCCGGATCTTTCCTCTACTACAACCATCACCACCACCAAG 530
Query 547 CCTTCGCGATAGTCGCCGGAGCTTTACTCGGTTGCGGCGCGGGACTTCTCTGGGCCGGAG 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 531 CCTTCGCGATAGTCGCCGGAGCTTTACTCGGTTGCGGCGCGGGACTTCTCTGGGCTGGAG 590
Query 607 AAGGAGCTGTGATGACGTCATACCCTCCGCCGCATCGGAAAGGCACTTACATAGCGTTGT 666
|||||||||||||||||||||| || ||||||||||||||||| |||||||| || ||||
Sbjct 591 AAGGAGCTGTGATGACGTCATATCCACCGCCGCATCGGAAAGGTACTTACATCGCTTTGT 650
Query 667 TCTGGAGTATCTTCAATCTCGGCGGCGTTATCGGTGGATTAATCCCGTTTATCCTCAACT 726
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |
Sbjct 651 TCTGGAGTATCTTCAATCTAGGCGGCGTAATCGGTGGATTAATCCCGTTTATCCTAAATT 710
Query 727 ACCAACGTAGCTCCGCCGCATCGGTCAACGACTCGACGTACATAGCGTTCATGTGTTTCA 786
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 711 ACCACCGTAGCTCCGCCGCATCGGTCAACGACTCGACGTATATCGCGTTCATGTGTTTCA 770
Query 787 TGTTCGCCGGCGTTCTTCTCTCTTTCGGTATCCTCCCGGCGACCTCCGTGATCCGTAACG 846
|||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 771 TGTTCGCCGGCGTTCTCCTCTCTTTCGGAATCCTTCCGGCGACCTCCGTAATCCGCAACG 830
Query 847 ACGGATCTAGATGCTCTGCCGTGAAATACTCCCGTCCGTCAACTGAAGCAGCCGCCGTGC 906
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 831 ACGGATCTAGATGCTCTGCCGTGAAATACTCCCGTCCGTCAACAGAAGCAGCGGCCGTGC 890
Query 907 TACGGCTATTCCTCGATCGGAAAATGCTCCTCATCGTCCCCGCGGCTTGGGCTAGCAATT 966
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 891 TACGGCTATTCCTCGATCGGAAAATGCTCCTCATTGTCCCCGCGGCTTGGGCTAGCAACT 950
Query 967 TCTTCTACAGCTATCAATTCAACAATGTGAATGGACTCCTCTTTAACTTAAGAACCAGAG 1026
||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 951 TCTTCTATAGCTATCAATTCAACAATGTGAATGGAATTCTCTTTAACTTAAGAACCAGAG 1010
Query 1027 GATTCAACAATGTCTTCTACTGGGGAGCTCAAATGGCTGGATCCATCGCCATTGGTTACG 1086
|||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1011 GATTCAACAACGTTTTCTACTGGGGAGCTCAAATGGCTGGATCCATTGCCATTGGTTACG 1070
Query 1087 TGATGGACTTCAGCTTCAAAAGCCGGCGAGCTAGAGGATTCACCGGAATATCACTAGTCG 1146
|||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||| |
Sbjct 1071 TGATGGACTTCAGCTTCAAAAGCCGGAGAGCGAGAGGATTTGCCGGAATATCATTAGTTG 1130
Query 1147 CGGTAATCGGAACCATTATATGGGCGGGCGGGTTAGCGAATCAGCACGGTTACTCGTTGG 1206
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1131 CGGTAATCGGAACCATTATTTGGGCGGGAGGGTTAGCGAATCAGCACGGTTACTCGTTGA 1190
Query 1207 ACAAACTACCGGAAAAGAAACTTGATTTTAAAGATTCCGGGATAGAGTTTGCGGGACCAT 1266
|||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1191 ACAATCTACCGGGAAAGAAACTTGATTTCAAAGATTCCGGGATAGAATTTGCGGGACCTT 1250
Query 1267 TCGTGTTATATATGAGCTATGGATTGTTAGATGCAATGTATCAGAGTATGGTTTATTGGT 1326
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1251 TCGTGTTATACATGAGCTATGGATTGTTAGATGCAATGTATCAGAGTATGGTGTATTGGT 1310
Query 1327 TGATAGGAGCATTGGCTGATGATTCGCAGACTTTGAGTAGATATAGTGGATTCTACAAAG 1386
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1311 TGATAGGAGCATTGGCTGATGATTCACAGACTTTGAGTAGATATAGTGGATTCTACAAAG 1370
Query 1387 GAGTGCAGAGTGCAGGAGCTGCAGTGGCTTGGCAAGTGGATACTCGTAAGGTTCCGTTAA 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GAGTGCAGAGTGCAGGAGCTGCAGTGGCTTGGCAAGTGGATACTCGTAAGGTTCCGTTAA 1430
Query 1447 TGTCACAGCTTATTGTTAATTGGTCACTTACTACTGTAAGTTATCCTTTACTTGTTCTTC 1506
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1431 TGTCACAGCTTATTGTTAATTGGTCACTTACTACTGTAAGTTATCCTTTACTGGTTCTTC 1490
Query 1507 TTGTGTATTTTTATGTTAAAAATGATAATGATGATGATAGTAATGATAAGGTTTAGAAGA 1566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 TTGTGTATTTTTATGTTAAAAATGATAATGATGATGATAGTAATGATAAGGTTTAGA--- 1547
Query 1567 TAGTAGTTTATTAGAACATTGAGTAAGTTAACTGTTTTTTAA 1608
||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1548 TAGTAGTTTATTAGAACATTGAGTAAGTTTACTGTTTTTTAA 1589
Score = 73.1 bits (39), Expect = 6e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1633 TAACAGTTACATAGAGAAACAAAGATTTGAGGCTCTGAAATG 1674
|||||||||||||||||||||||||||||||||| |||||||
Sbjct 1587 TAACAGTTACATAGAGAAACAAAGATTTGAGGCTGTGAAATG 1628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63267896945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5