BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18020.1
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911616 jgi|Araly1|911616|Al_scaffold_0001_1870 577 7e-164
> Ahg911616 jgi|Araly1|911616|Al_scaffold_0001_1870
Length=900
Score = 577 bits (312), Expect = 7e-164
Identities = 363/388 (94%), Gaps = 2/388 (1%)
Strand=Plus/Plus
Query 24 ATGGAGACTAAACAGAGTATCCCTCTCCTCATGCCCTATAAGATGGGACCCTTCAATCTT 83
|||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 1 ATGGAGACAAAACAGAGTATCCCTCTCCTCGCGCCCTATAAGATGAGACTCTTCAATCTT 60
Query 84 TCTCACAGGGTTGTT-TTGGCGCCATTGACTAGATCGAGATCGTATGGTAACATTCCTCA 142
||||||||||||||| || ||||||||||| ||||| |||||||||||| |||||||||
Sbjct 61 TCTCACAGGGTTGTTCTT-GCGCCATTGACGAGATCTCGATCGTATGGTAGCATTCCTCA 119
Query 143 GCCTAATGCCAAATTATATTACACTCAGAGAACAACACCTGGTGGTCTTCTTATTTCCGA 202
|||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 120 GCCTCATGTCAAATTATATTACACTCAGAGGACAACACCTGGTGGACTTCTTATTTCCGA 179
Query 203 ATCCTGTGTAGTCTCCGAGACATCATTGGGCTATCCGGATTTACCTGGATTATGGAACAG 262
| |||||| ||| ||||||||||||||||||||||||||| |||||||| |||||| |||
Sbjct 180 AGCCTGTGCAGTGTCCGAGACATCATTGGGCTATCCGGATATACCTGGAATATGGACCAG 239
Query 263 AGACCAAGTGGAGGCATGGAAGCCCATCGTGGATGCGGTTCATTCGAAAGGCGGTATCTT 322
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 240 AGAACAAGTGGAGGCATGGAAGCCCATCGTGGATGCGGTTCATTCGCAAGGCGGTATCTT 299
Query 323 CTTCTGCCAGATTTGGCATGGTGGCAGAGTTTTTCATCAAGACCAGCCAAATGGGGAAGC 382
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 CTTCTGCCAGATTTGGCACGGTGACAGAGTTTTTCATCAAGACCAGCCAAATGGGGAAGC 359
Query 383 ACCCGTCTCCTCTACAGACAAGCCATTG 410
||||||||||||||||||||||||||||
Sbjct 360 ACCCGTCTCCTCTACAGACAAGCCATTG 387
Score = 540 bits (292), Expect = 1e-152
Identities = 355/385 (92%), Gaps = 5/385 (1%)
Strand=Plus/Plus
Query 525 GGCTTCGATGGAGTGGAGGTTCACGGCGCACATGGTTACCTGATCGATCAGTTCCTGAAA 584
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GGCTTCGATGGCGTGGAGGTTCACGGCGCACATGGTTACCTGATCGATCAGTTCCTGAAA 474
Query 585 GACAAAGTGAATGACAGAAGTGACCAATATGGTGGGTCATTAGAGAACCGCTGTAGATTT 644
||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||||||
Sbjct 475 GACAAAGTGAATGACAGAAGTGATGAATACGGTGGGTCACTCGAGAACCGCTGTAGATTT 534
Query 645 GCTCTTGAAGTAATCGAAGCAGTGGTGAACGAGATCGGTTCAGATCGTGTTGGAATCAGA 704
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 535 GCTCTGGAAGTAATCGAAGCAGTGGTGAACGAGATCGGTCCAGATCGTGTTGGAATCAGA 594
Query 705 CTCTCGCCATTTGCAGATTACATGGAGTCAGGAGACTCGAATCCAGAAGCATTAGGGCTC 764
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 595 CTCTCGCCATTCGCAGATTACATGGAGTCCGGAGACTCGAATCCAGAAGCATTAGGGCTC 654
Query 765 TACCTGGTGCAAGCTATGAACAAGCATGGCATGGAGTCGTCTACGGTCACATGGTTGAAC 824
||||||||||||||||||||||||||||| | | || | ||| ||||| | |||||||
Sbjct 655 TACCTGGTGCAAGCTATGAACAAGCATGG-A---A-TCCTTTACTGTCACTTAGTTGAAC 709
Query 825 CTAGAATGAAAACCCTTGAAGGAATCTTCGAATGCACGGAATCGCTTACGCCCATGCGAA 884
||||||||||||||| |||||||||||| || |||| |||||||||||| || ||| |||
Sbjct 710 CTAGAATGAAAACCCCTGAAGGAATCTTTGAGTGCAAGGAATCGCTTACTCCGATGAGAA 769
Query 885 AAGCCTTCAAAGGTACGTTCATAGT 909
||||||||||| |||||||||||
Sbjct 770 TTGCCTTCAAAGGAACGTTCATAGT 794
Score = 119 bits (64), Expect = 5e-26
Identities = 75/80 (94%), Gaps = 2/80 (3%)
Strand=Plus/Plus
Query 962 ACCGATCTTGTGGCTTATGGACGGCCGTTCTTGGCGAATCCGGATCTGAC-GAGGAGATT 1020
||||||||||||||||||||| || ||||||||||||||||||||||| | ||||||||
Sbjct 822 ACCGATCTTGTGGCTTATGGAAGGACGTTCTTGGCGAATCCGGATCTG-CTCAGGAGATT 880
Query 1021 CGAACTCAATGAGCCGTTGA 1040
||||||||||||||||||||
Sbjct 881 CGAACTCAATGAGCCGTTGA 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43993846218
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5