BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18030.1
Length=1423
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312763 jgi|Araly1|312763|fgenesh1_pm.C_scaffold_1001543 1447 0.0
Ahg352252 jgi|Araly1|352252|fgenesh1_pg.C_scaffold_6002845 525 3e-148
Ahg472021 jgi|Araly1|472021|fgenesh2_kg.1__1975__AT1G18040.1 159 4e-38
> Ahg312763 jgi|Araly1|312763|fgenesh1_pm.C_scaffold_1001543
Length=1026
Score = 1447 bits (783), Expect = 0.0
Identities = 832/856 (97%), Gaps = 2/856 (0%)
Strand=Plus/Plus
Query 259 AAGAAGGAGTTTCTGGTCGAAGCTGATGTTGCTGAAGACAAAGGAGCTAGACATACTATG 318
|||||||||||||| || ||||||| |||||||||||||||||||||||||||||| |||
Sbjct 172 AAGAAGGAGTTTCTCGTTGAAGCTGGTGTTGCTGAAGACAAAGGAGCTAGACATACGATG 231
Query 319 GAAGATGTTTGGGTGGTTTTGCCTGACGCTTCTTTGGATTTCCCAGGGACACTAAGGTGT 378
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GAAGATGTATGGGTGGTTTTGCCTGACGCTTCTTTGGATTTCCCAGGGACACTAAGGTGT 291
Query 379 GCGCATTTTGCAATTTATGATGGGCATGGAGGTCGTTTAGCTGCAGAGTTTGCTAAGAAG 438
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 292 GCGCATTTTGCAATTTATGATGGGCATGGAGGTCGTTTAGCTGCAGATTTTGCTAAGAAG 351
Query 439 CATCTTCACCTTAACGTTCTTTCAGCTGGGTTACCACGTGAGTTGCTGGATGTCAAAGTT 498
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CATCTTCACCTTAATGTTCTTTCAGCTGGGTTACCACGTGAGTTGCTGGATGTCAAAGTT 411
Query 499 GCTAAAAAGGCCATTCTTGAAGGTTTCCGGAAAACTGATGAGTTGCTCCTGCAAAAAAGT 558
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 412 GCTAAAAAGGCCATTCTTGAAGGTTTCCGGAAAACCGATGAGTTGCTCCTGCAAGAAAGT 471
Query 559 GTTTCAGGAGGATGGCAAGATGGAGCCACAGCAGTCTGTGTCTGGATACTTGATCAAAAG 618
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 472 ATTTCAGGAGGATGGCAAGATGGCGCCACAGCAGTGTGTGTCTGGATACTTGATCAAAAG 531
Query 619 GTTTTTGTTGCCAATATCGGTGATGCTAAGGCTGTTTTGGCACGATCCTCTACTACCAAC 678
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 532 GTTTTTGTTGCCAATATCGGTGATGCTAAGGCTGTTTTGGCACGATCATCTGCTACCAAC 591
Query 679 GAATTGGGGAATCATACAGAAGCAGGTAATCCACTCAAAGCAATTGTTTTGACGAGAGAG 738
|| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 592 GAGTTGGAGAATCATACAGAAGCATGTAATCCACTCAAAGCAATTGTTTTGACGAGAGAG 651
Query 739 CACAAAGCAATTTATCCACAGGAGCGCTCTCGCATTCAAAAGTCAGGTGGTGTTATAAGC 798
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 652 CACAAAGCAATTTATCCACAGGAGCGCTCTCGAATTCAGAAGTCAGGTGGTGTTATAAGC 711
Query 799 TCAAATGGACGGTTACAAGGGCGTCTTGAGGTTTCTAGGGCTTTTGGTGATCGTCATTTT 858
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 712 TCAAATGGACGGTTACAAGGGCGTCTTGAGGTTTCTAGGGCTTTTGGTGATCGTCAATTT 771
Query 859 AAGAAGTTTGGTGTCAGTGCAACTCCAGACATTCATGCTTTTGAATTAACTGAGAGAGAA 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AAGAAGTTTGGTGTCAGTGCAACTCCAGACATTCATGCTTTTGAATTAACTGAGAGAGAA 831
Query 919 AACTTCATGATTCTTGGTTGCGATGGATTGTGGGAAGTGTTTGGACCAAGTGATGCTGTT 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AACTTCATGATTCTTGGTTGCGATGGATTGTGGGAAGTGTTTGGACCAAGTGATGCTGTT 891
Query 979 -GGATTTGTCCAGAAACTTTTGAAGGAGGGCTTGCATGTAAGCACGGTAAGTCGCCGTCT 1037
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 892 TGG-TTTGTCCAGAAACTTTTGAAGGAGGGCTTGCCTGTAAGCACGGTAAGTCGCCGTCT 950
Query 1038 TGTGAAGGAAGCTGTGAAAGAACGTCGTTGCAAAGACAACTGCACAGCAATCGTGATAGT 1097
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TGTAAAGGAAGCTGTGAAAGAACGTCGTTGCAAAGACAACTGCACAGCAATCGTGATAGT 1010
Query 1098 CTTCAAGCGGGTATGA 1113
||||||||||||||||
Sbjct 1011 CTTCAAGCGGGTATGA 1026
Score = 237 bits (128), Expect = 2e-61
Identities = 162/177 (92%), Gaps = 7/177 (4%)
Strand=Plus/Plus
Query 62 TGGAGAAGGAATCTGATTTGACTGCAATGGAGAAACCAAATAACAAGCACGCGGCTGATT 121
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2 TGGAGAAGGAATCTCATTTGACTGCAAAGGAGAAACCAAATAACAAGCACGCGGCTGATT 61
Query 122 CGTTTTCCAGCGAGGATTTGGTCTCACCGGTGAAGAAGGCAAAGAAGTCAGAGGAG---G 178
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 62 CGTTTTCCAGCGAGGAATTGGTCCCACCGGTGAAGAAGGCAAAGAAGTCAGAGGAGACTG 121
Query 179 --T-TTCCGGCGGAGGAGAAGCTGTAGCCGCCGTTGGTAATAGAGAGGCGGAAGAAG 232
| ||||| ||||||||||| ||||||||||||||||||||||||| | ||||||
Sbjct 122 GATGTTCCGATGGAGGAGAAGCCGTAGCCGCCGTTGGTAATAGAGAGGAG-AAGAAG 177
> Ahg352252 jgi|Araly1|352252|fgenesh1_pg.C_scaffold_6002845
Length=510
Score = 525 bits (284), Expect = 3e-148
Identities = 385/432 (89%), Gaps = 14/432 (3%)
Strand=Plus/Plus
Query 617 AGGTTTTTGTTGCCAATATCGGTGATGCTAAGGCTGTTTTGGCACGATCCTCTACTACCA 676
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 26 AGGTTTTTATTGCCAATATCGGTGATGCTAAGGCTGTTTTGGCACGATCCTCTACTCCCA 85
Query 677 ACGA-ATTGGGGAATCATACAGAAGCAGGTAATCCACTCAAAGCAATTGTTTTGACGAGA 735
|| || ||||||||||| |||| || ||||||||||||||| |||| ||||||| |||
Sbjct 86 GTGAGAT-GGGGAATCATATAGAAACATGTAATCCACTCAAAGGAATTCTTTTGACAAGA 144
Query 736 GAGCACAAAGCAATTTATCCACAGGAGCGCTCTCGCATTCAAAAGTCAGGTGGTGTTATA 795
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 145 GAGCACAAAGCAATTTATCCACAGGAGCGTTCTCGCAGTCAAAAGTCAGGTGGTGTTATA 204
Query 796 AGCTCAAATGGACGGTTACAAGGGCGTCTTGAGGTTTCTAGGGCTTTTGGTGATCGTCAT 855
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 205 AGCTCAAATGGACGGTTACAAGGGCGTCTTGATGTTTCTAGGGCTTTTGGTGATCGTCAA 264
Query 856 TTTAAGAAGTTTGGTGTCAGTGCAACTCCAGACATTCATGCTTTTGAATTAACTGAGAGA 915
|| || ||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 265 TTCAACAAGTTTGGTGTCACTGCAACTCCGGACATTCATGCATTTGAATTAACCGAGAGA 324
Query 916 GAAAACTTCATGATTCTTGGTTGCGATGGATTGTGGGAAGTGTTTGGACCAAGTGATGCT 975
|||||||| ||||||||||||||| |||||||||||||||| ||||||||||| | | |
Sbjct 325 GAAAACTTTATGATTCTTGGTTGCCATGGATTGTGGGAAGTATTTGGACCAAG-G-T--T 380
Query 976 GTTGGATTTGTCCAGAAACTTTTGAAGGAGGGCTTGCATGTAAGCACGGTAAGTCGCCGT 1035
| | || | ||||||| || ||||||||||||| ||||||| | ||||| | |||
Sbjct 381 -T-G--TT---C-AGAAACTCTTCAAGGAGGGCTTGCCTGTAAGCTCAATAAGTTGTCGT 432
Query 1036 CTTGTGAAGGAA 1047
||||| || |||
Sbjct 433 CTTGTAAAAGAA 444
> Ahg472021 jgi|Araly1|472021|fgenesh2_kg.1__1975__AT1G18040.1
Length=1616
Score = 159 bits (86), Expect = 4e-38
Identities = 106/115 (92%), Gaps = 4/115 (3%)
Strand=Plus/Minus
Query 1310 AAAAGTAGAAAGCTTTATAATCATAGACTTCATAGTACAGTATGATCAGTTTACAATGAA 1369
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1616 AAAAGTAGAAAGCTTTATAATCATAGACTTCGTAGTACAGTATGATCAGTTTACAATAAA 1557
Query 1370 TAAAAAGCCTATGGGACAACAAAATATTATCATTGTGAATCTAAGG-TCCCTCTG 1423
|||| |||||||||||||| |||||||| |||||||||| || || ||||||||
Sbjct 1556 TAAA--GCCTATGGGACAACGAAATATTAGCATTGTGAATTTA-GGATCCCTCTG 1505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212072265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5