BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18040.1
Length=1634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472021 jgi|Araly1|472021|fgenesh2_kg.1__1975__AT1G18040.1 2361 0.0
Ahg476509 jgi|Araly1|476509|fgenesh2_kg.2__1639__AT1G73690.1 1101 0.0
Ahg943049 jgi|Araly1|943049|scaffold_603593.1 200 3e-50
> Ahg472021 jgi|Araly1|472021|fgenesh2_kg.1__1975__AT1G18040.1
Length=1616
Score = 2361 bits (1278), Expect = 0.0
Identities = 1528/1643 (93%), Gaps = 40/1643 (2%)
Strand=Plus/Plus
Query 1 GCGTCTGCAAACGCGCCAACGGCTACTTTTTCTCCGGAGCCGGAGCTCTCAAAGCTGAAA 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1 GCGTCTGCAAACGCGCCAACGGCTACTTTTTCTCCGGAGCCGGAGCTCCCAACGCTGAAA 60
Query 61 CCCT---AAATTTTCCCGGTATCTTCCTCATCGTCGATTTTACTCAATTTAGAATAAAAA 117
|||| ||| | |||||||||||||||||||||||||||||| ||| | |
Sbjct 61 CCCTAAAAAAATCTCCCGGTATCTTCCTCATCGTCGATTTTACCCAA--T----T----- 109
Query 118 TCGGAAAGCAATCGAATTCTAGCGACGTGAATTAAGAAGAAAGAGAG-AGGCGCGATTAT 176
|||||||||||||||||||||| || | ||| | ||| || || | | || |
Sbjct 110 TCGGAAAGCAATCGAATTCTAGTGA-GGGAA-CCA-AAG--TGA-AGTAAG-AAGA--A- 159
Query 177 TGAGTG-GGTTCTGAAAAACCCGAAAATGCCGGAGCAGCCAAAGAAAGTTGCTGATAGGT 235
||| | | ||||| ||| | || |||||||||||||||||||||||||||||
Sbjct 160 AGAGAGAAAACCCGAAAATGCCGGAGAT---GGAGCAGCCAAAGAAAGTTGCTGATAGGT 216
Query 236 ATCTCAAGCAAGAGGTTCTTGGGCAAGGTACCTATGGAGTCGTCTTCAAAGCCACTGATA 295
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 217 ATCTCAAGCAAGAGGTTCTTGGTCAAGGTACCTATGGAGTCGTCTTCAAGGCCACTGATA 276
Query 296 CTAAGACGGAACAAACTGTAGCAATTAAGAAGATAAGGCTTGGTAAACAAAGAGAAGGTG 355
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 277 CTAAGACGGAACAAACTGTAGCAATCAAGAAGATAAGGCTTGGTAAACAAAGGGAAGGTG 336
Query 356 TAAATATTACAGCTCTCAGAGAAATCAAAATGCTCAAAGAGCTAAAGCATCCTCATATTA 415
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 337 TAAATATTACAGCTCTCAGGGAAATCAAAATGCTCAAAGAGCTTAAGCATCCTCATATAA 396
Query 416 TTCTGCTCATTGATGCATTTCCTCACAAGGAAAACTTGCATCTTGTCTTTGAGTTCATGG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 TTCTGCTCATTGATGCATTTCCTCACAAGGAAAACTTGCATCTTGTCTTTGAGTTCATGG 456
Query 476 AGACTGACCTCGAAGCAGTTATTCGCGATTCTAACATTTTCCTCTCACCCGCCGACATTA 535
|||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||| |
Sbjct 457 AGACTGACCTCGAAGCTGTCATTCGCGATTCCAACATATTCCTCTCACCCGCCGACATCA 516
Query 536 AATCCTACCTCCTAATGACATTTAAAGGACTTGCTTATTGCCACGATAAATGGGTTTTGC 595
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 AATCTTACCTCCTAATGACATTTAAAGGACTTGCTTATTGCCACGATAAATGGGTTTTGC 576
Query 596 ACAGGGATATGAAGCCAAATAACTTGTTAATAGGAGTTGATGGACAGCTTAAGCTTGCAG 655
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 577 ACAGGGATATGAAGCCAAATAACTTGTTAATAGGAGTTGATGGACAGCTGAAGCTTGCAG 636
Query 656 ATTTTGGCTTAGCACGTATATTTGGTAGTCCAAATCGTAAGTTTACCCACCAGGTGTTTG 715
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 637 ATTTTGGCTTAGCACGTATATTTGGTAGTCCTAATCGTAAATTTACCCACCAGGTGTTTG 696
Query 716 CTAGATGGTACAGAGCACCAGAACTTTTGTTTGGTGCAAAACAATATGGTGCTGCAGTTG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CTAGATGGTACAGAGCACCAGAACTTTTGTTTGGTGCAAAACAATATGGTGCTGCAGTTG 756
Query 776 ATGTTTGGGCCGTTGCCTGCATATTCGCCGAACTTCTACTACGCAGACCATTTCTTCAGG 835
|||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 757 ATGTGTGGGCCGTTGGCTGCATATTCGCCGAACTTCTACTGCGCAGACCATTTCTTCAGG 816
Query 836 GAAACAGTGATATTGATCAATTAAGCAAAATATTTGCTGCTTTTGGGACACCAAAAGCAG 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 GAAACAGTGATATTGATCAATTAAGCAAAATATTTGCTGCTTTTGGGACACCAAAAGCAG 876
Query 896 ATCAGTGGCCGGATTTAACAAAGCTTCCAGATTATGTAGAGTATCAATTTGTCCCTGCAC 955
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 877 ATCAGTGGCCGGATGTAACAAAGCTTCCAGATTATGTAGAGTATCAATTTGTCGCGGCAC 936
Query 956 CGTCTCTACGTTCTTTATTCCCAGCAGTTAGTGATGATGCTCTCGACTTGTTGTCCAAAA 1015
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 937 CGTCTCTACGTTCTTTATTCCCAGCAGTTAGTGAAGATGCTCTCGACTTGTTGTCCAAAA 996
Query 1016 TGTTTACCTATGACCCAAAGGCTAGAATTTCCATTAAGCAGGCTCTAGAACACAGGTACT 1075
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 997 TGTTTACCTATGACCCAAAGGCCAGAATTTCCATAAAGCAGGCTCTAGAACACAGATACT 1056
Query 1076 TCACTTCTGCACCTGCTCCTACTGACCCGGCTAAGCTCCCAAAGCCCGTTCCTAAGCAGG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1057 TCACTTCTGCACCTGCTCCTACTGACCCGGCTAAGCTCCCAAAGCCCGTTCATAAGCAGG 1116
Query 1136 ATGGTAAATCATCTTACGGTAAACATGAGGCCATTACAGTGCAATCACCACCACGTAAGC 1195
|||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1117 ATGGTAAATCCTCTTACGGTAAACATGAAGCCATTACAGTGCTATCACCACCACGTAAGT 1176
Query 1196 TTAGAAGAGTGATGCCTGAGCGTGGGAGGGTTGATAGTTTGAAGTCTCATGTTGACAAGG 1255
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1177 TTAGAAGAGTGATGCCTGAGCGTGGGAGGGTTGATAGTTTAAAGGCTCATGTTGACAAGG 1236
Query 1256 ATCAACAAGCACCCATGTCATTAGATTTTACCATCCTCGCTGAGCGACCTCCAAACAGGC 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1237 ATCAACAAGCACCCATGTCATTAGATTTTACCATCCTCGCTGAGCGACCTCCAAACCGGC 1296
Query 1316 CAACAATCACCAGTGCTGATAGATCTCATCTGAAGAGGAAACTCGATCTTGAGTTCCAGT 1375
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1297 CAACAATCACCAGTGCTGATAGATCTCATCTGAAGAGGAAACTCGATCTTGAGTTCCAAT 1356
Query 1376 AAGACTGTTGGTTATGCACTCTT-C-TCTT-----AGCTTCTCCATTTTCATGTTCTGGT 1428
||||||||| ||| ||||||||| | |||| | |||||||||||||||||||||||
Sbjct 1357 AAGACTGTTTGTTTTGCACTCTTGCCTCTTCTCTTACCTTCTCCATTTTCATGTTCTGGT 1416
Query 1429 GAAACCACACCATTGTTAAGTTGTCAATTTACTGCTGCTTGTGTAATCTGGCGATTTATT 1488
|| |||| | |||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1417 GAGACCAAAACATTCTTAAGTTGTCAATTTACTGCTGCTTGTGTAAGCTGGCGATTTATT 1476
Query 1489 CTTTTCCATATTTAGCTTGATTACAAACCAGAGGGA-CCTTAGATTCACAATGATAATAT 1547
||||| ||| |||||||| ||||||||||||||||| ||| | |||||||||| ||||||
Sbjct 1477 CTTTTTCATTTTTAGCTTAATTACAAACCAGAGGGATCCTAA-ATTCACAATGCTAATAT 1535
Query 1548 TTTGTTGTCCCATAGGCTTTTTATTCATTGTAAACTGATCATACTGTACTATGAAGTCTA 1607
|| ||||||||||||||||| | || ||||||||||||||||||||||||| ||||||||
Sbjct 1536 TTCGTTGTCCCATAGGCTTTAT-TT-ATTGTAAACTGATCATACTGTACTACGAAGTCTA 1593
Query 1608 TGATTATAAAGCTTTCTACTTTT 1630
|||||||||||||||||||||||
Sbjct 1594 TGATTATAAAGCTTTCTACTTTT 1616
> Ahg476509 jgi|Araly1|476509|fgenesh2_kg.2__1639__AT1G73690.1
Length=1584
Score = 1101 bits (596), Expect = 0.0
Identities = 1010/1204 (84%), Gaps = 52/1204 (4%)
Strand=Plus/Plus
Query 207 GGAGCAGCCAAAGAAAGTTGCTGATAGGTATCTCAAGCAAGAGGTTCTTGGGCAAGGTAC 266
||| |||||||| |||||||| ||||||||||| |||| ||||||||||| ||||||||
Sbjct 141 GGATCAGCCAAAAAAAGTTGCCGATAGGTATCTGAAGCGTGAGGTTCTTGGTCAAGGTAC 200
Query 267 CTATGGAGTCGTCTTCAAAGCCACTGATACTAAG-ACGGAACAAACTGTAGCAATTAAGA 325
|| |||||||||||||| || |||||||||||| | || | |||||||||| |||||||
Sbjct 201 TTACGGAGTCGTCTTCAAGGCTACTGATACTAAGAATGG-AGAAACTGTAGCGATTAAGA 259
Query 326 AGATAAGGCTTGGTAAACA-AAGAGAAGGTGTAAATATTACAGCTCTCAGAGAAATCAAA 384
| ||||| ||||||||| | || ||||||||| ||| | |||||||| ||||||||||||
Sbjct 260 AAATAAGACTTGGTAAAGAGAA-AGAAGGTGTGAATGTAACAGCTCTTAGAGAAATCAAA 318
Query 385 ATGCTCAAAGAGCTAAAGCATCCTCATATTATTCTGCTCATTGATGCATTTCCTCACAAG 444
| || |||||||| |||||||| ||||| ||| | | ||||||||||| |||||||||
Sbjct 319 TTACTTAAAGAGCTTAAGCATCCACATATAATTGAGTTGATTGATGCATTCCCTCACAAG 378
Query 445 GAAAACTTGCATC-TTGTCTTTGAGTTCATGGAGACTGACCTCGAAGCAGTTATTCGCGA 503
|| |||||||| | |||| |||||||||||||||||||| ||||| || |||||||||||
Sbjct 379 GAGAACTTGCA-CATTGTGTTTGAGTTCATGGAGACTGATCTCGAGGCTGTTATTCGCGA 437
Query 504 TTCTAA-CAT-TTTCCTCTCACCCGCCGACATTAAATCCTACCTCCTAATGACATTTAAA 561
| |||| | | ||| || || ||||| || | ||||| ||||||| ||||| ||| |||
Sbjct 438 TCCTAATC-TGTTT-CTTTCGCCCGCTGATGTCAAATCTTACCTCCAAATGATATTGAAA 495
Query 562 GGACTTGCTTATTGCCACGATAAATGGGTTTTGCACAGGGATATGAAGCCAAATAACTTG 621
|| |||| |||||||| || ||||||||||||||||| |||||||||||||| ||||||
Sbjct 496 GGTCTTGAGTATTGCCATGACAAATGGGTTTTGCACAGAGATATGAAGCCAAACAACTTG 555
Query 622 TTAATAGGAGTTGATGGACAGCTTAAGCTTGCAGATTTTGGCTTAGCACGTATATTTGGT 681
|| |||||| ||||||| || || |||||||||||||| ||||| ||||||||||||
Sbjct 556 TTGATAGGACCCAATGGACAACTGAAACTTGCAGATTTTGGGTTAGCTCGTATATTTGGT 615
Query 682 AGTCCAAATCGTAAGTTTACCCACCAGGTGTTTGCTAGATGGTACAGAGCACCAGAACTT 741
|| ||| ||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 616 AGCCCAGGTCGTAAGTTTACCCACCAGGTCTTTGCTAGATGGTATAGAGCACCTGAACTT 675
Query 742 TTGTTTGGTGCAAAACAATATGGTGCTGCAGTTGATGTTTGGGCCGTTGCCTGCATATTC 801
||||||||||||||||||||||||| |||||||||||||||||| | || |||||| ||
Sbjct 676 TTGTTTGGTGCAAAACAATATGGTGGTGCAGTTGATGTTTGGGCTGCTGGCTGCATTTTT 735
Query 802 GCCGAACTTCTACTACGCAGACCATTTCTTCAGGGAAACAGTGATATTGATCAATTAAGC 861
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GCTGAACTTCTATTACGCAGACCATTTCTTCAGGGAAACAGTGATATTGATCAATTAAGC 795
Query 862 AAAATATTTGCTGCTTTTGGGACACCAAAAGCAGATCAGTGGCCGGATTTAA-CAAAGC- 919
||||| |||||||| |||||||| |||||||||||||||||||| ||| | | | ||
Sbjct 796 AAAATCTTTGCTGCCTTTGGGACCCCAAAAGCAGATCAGTGGCCCGATATGATCT--GCC 853
Query 920 TTCCAGATTATGTAGAGTATCAATTTGTCCCTGCACCGTCTCTACGTTCTTTATTCCCAG 979
|||| ||||||||||||||||||||||||||||| || ||| ||||||||||| |||||
Sbjct 854 TTCCTGATTATGTAGAGTATCAATTTGTCCCTGCGCCTTCTTTACGTTCTTTACTCCCAA 913
Query 980 CAGTTAGTGATGATGC-TCTCGACTTGTTGTCCAAA-ATGTTTACCTATGA-CCCAAAGG 1036
| |||||||| ||||| | | || |||||||| ||| |||||||||||||| ||||| |
Sbjct 914 CGGTTAGTGAGGATGCAT-TAGATTTGTTGTC-AAAGATGTTTACCTATGATCCCAA-GT 970
Query 1037 CTAGAATTTCCATTAAGCAGGCTCTAGAACACAGGTACTTCACTTCTGCACCTGCTCCTA 1096
||||||| | ||| ||||||||||| |||||||||||||||| ||||||||| | ||||
Sbjct 971 CTAGAATAACGATTCAGCAGGCTCTACAACACAGGTACTTCACATCTGCACCTTCGCCTA 1030
Query 1097 CTGACCCGGCTAA-GCTCCCAAAGCCC-GTTC-CTAAGCAGGATGGTAAATCATCTTACG 1153
||||||| ||| |||||||| | || |||| | |||||||| | ||| |||||| ||
Sbjct 1031 CTGACCCTT-TAAAGCTCCCAA-GACCAGTTCGC-AAGCAGGACGCTAAGTCATCTGACA 1087
Query 1154 GTAAACATGAGGCCATTACAGTGCAATCACCACCACGTAAGCTTAGAAGAGTGATGCCTG 1213
||||||| || || |||| |||| |||||| ||| |||||||||||||||||||||||
Sbjct 1088 GTAAACACGAAGCTATTAAAGTGTTGTCACCAGCACATAAGCTTAGAAGAGTGATGCCTG 1147
Query 1214 AGCGTGGGAGGGT-TGATA--G-TTT---G-A--AG--TCTC-ATGT--TGA--CAAG-- 1254
| || || | | | || || | ||| | | || | | |||| ||| ||||
Sbjct 1148 ACCGAGGAAAG-TCTGCTAATGGTTTCAAGGACCAGAGTGTTGATGTCATGAGACAAGCT 1206
Query 1255 -G--ATCA---ACAAGCACCCATGTCATTAGATTTTACCATCCTCGCTGAGCGACCTCCA 1308
| || | ||||||||| ||||| |||||||| |||||||| || ||||| |||||
Sbjct 1207 AGCCATGATGGACAAGCACCGATGTCTTTAGATTTCACCATCCTAGCCGAGCGGCCTCCT 1266
Query 1309 AACAGGCCAACAATCACCAGTGCTGATAGATCTCATCTGAAGAGGAAACTCGATCTTGAG 1368
||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1267 AACCGACCAACCATCACCAGTGCGGATAGATCTCATCTGAAGAGGAAACTCGATCTCGAG 1326
Query 1369 TTCC 1372
||||
Sbjct 1327 TTCC 1330
> Ahg943049 jgi|Araly1|943049|scaffold_603593.1
Length=416
Score = 200 bits (108), Expect = 3e-50
Identities = 123/130 (95%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 706 CAGGTGTTTGCTAGATGGTACAGAGCACCAGAACTTTTGTTTGGTGC-AAAACAATATGG 764
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 135 CAGGTGTTTGCTAGATGGTACAGAGCACCAGAACTTTTGTTTGGTGCTAAAA-AATATGG 193
Query 765 TGCTGCAGTTGATGTTTGGGCCGTTGCCTGCATATTCGCCGAACTTCTACTACGCAGACC 824
||||||||||||||||||||| | || |||||||||||| |||||||| |||||||||||
Sbjct 194 TGCTGCAGTTGATGTTTGGGCTGCTGGCTGCATATTCGCTGAACTTCTGCTACGCAGACC 253
Query 825 ATTTCTTCAG 834
||||||||||
Sbjct 254 ATTTCTTCAG 263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61249113960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5