BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G18050.1

Length=858
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920730 jgi|Araly1|920730|scaffold_102011.1                        311    6e-84


> Ahg920730 jgi|Araly1|920730|scaffold_102011.1
Length=1115

 Score =  311 bits (168),  Expect = 6e-84
 Identities = 348/427 (81%), Gaps = 44/427 (10%)
 Strand=Plus/Plus

Query  425  CTCCGGCAGATGTACCTCCGA-GGACTAGATATTAT-GCGGATAGCTCAGCCCGTTTGGT  482
            ||||||| ||||||||||| | ||  |||||||| | || |||||||| |||||||||||
Sbjct  68   CTCCGGCGGATGTACCTCC-ATGGGTTAGATATT-TGGCCGATAGCTCGGCCCGTTTGGT  125

Query  483  TTTCATGGA-GGGGCCTGAGATGGAGAGAAAG-ATGATGACAAGCTATGCGGGAAACCCA  540
             ||||   | ||||  ||||||||||||  || |||||||||||||||||| ||||||||
Sbjct  126  ATTCAAATACGGGG-TTGAGATGGAGAG-TAGTATGATGACAAGCTATGCGAGAAACCCA  183

Query  541  AAGTACTCCTTCTTCTGGAGCTCAGATCGTTATCATGCTTATTACCAGAAAAAGCTTGCT  600
             | |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  184  GATTACTCCTTCTTCCGGAGCTCAGATCGTTATCACGCTTATTACCAGAAAAAGCTTGCT  243

Query  601  GGATA-----C-CA-ATTACATGAGGGACCTGAGATCAAACT-TAGTGATTATGGGATAC  652
            | |||     | || |  |||||||||||||||||||||| | |||||||||||||||| 
Sbjct  244  GAATACCGCGCGCAGA-AACATGAGGGACCTGAGATCAAA-TATAGTGATTATGGGATAG  301

Query  653  CTGATGTTCCATTGAGGGTGAGGGTAAGGGAACCACCGCTTCAGATTCCAAAACCTCCTC  712
            ||||   |||||||||||||| ||| |||| |  ||||  |    ||| ||||||| | |
Sbjct  302  CTGAAACTCCATTGAGGGTGAAGGTGAGGG-A--ACCG--T----TTCGAAAACCT-C-C  350

Query  713  CG-G--GCTTTG-CTAGT-GACCAG-AAGC-----CGAC-A-ATGAAGTATCCGCCTCCA  759
            || |  ||   | ||| |   || | ||||      ||| | ||||||  ||||||||||
Sbjct  351  CGAGTTGC-AGGCCTA-TCTTCCTGAAAGCTTTAGTGACAAGATGAAGCGTCCGCCTCCA  408

Query  760  CCACCTCGCAAGTATGCAGCTATACTCCCTGAATGGATTACTGGCAAAGAGCTTGAAACT  819
            |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct  409  CCACCTCGCAAGTATGCAGCTATACTCCCTAAATGGATCACTGGCAAAGAGCTTGAAACT  468

Query  820  ATCAAGG  826
            |||||||
Sbjct  469  ATCAAGG  475



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31756389861


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5