BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18060.1
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920732 jgi|Araly1|920732|scaffold_102013.1 1136 0.0
Ahg920730 jgi|Araly1|920730|scaffold_102011.1 111 8e-24
> Ahg920732 jgi|Araly1|920732|scaffold_102013.1
Length=721
Score = 1136 bits (615), Expect = 0.0
Identities = 683/716 (95%), Gaps = 3/716 (0%)
Strand=Plus/Plus
Query 116 AGCTTCTCAGAGACGATGATGGTCTCACTAGCTTCATGTGTTTCGTCCCCATCTTCTTCG 175
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 6 AGCTTCTCAGAGACGATGATGGTCTCACTAGCTTCATGGGTTTCGTCCCCATCTTCTTC- 64
Query 176 TCTCTGTTCTTTAGTCGTCGGGAGAGATTACATTTGGTGAAAGCCACGGTGGATGGCAGG 235
|||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 65 TCTC--TTCCTTAGTCGTCGCGAGAGATTACATTTGGTGAAAGCCACGGTCGATGGTAGG 122
Query 236 AACCAGATTGTCCCACCGGCAAAAGATCAAATCCCTAACAAACAAGTAACGGAGAGTGTG 295
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 123 AACCAGATTGTCCCACCGGCAAAAGAGCAAATCCCTAACAAAGAAGTAACGGAGAGTGTG 182
Query 296 AATGTATTAAAAACGGCTGCAAAAACTCGGAAAGTTGCAGCAGATGAGATTTTAGCTGCT 355
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AATGTGTTAAAAACCGCTGCAAAAACTCGGAAAGTTGCAGCAGATGAGATTTTAGCTGCT 242
Query 356 TTCTCTGCTATCGAAAAGGCTAAGATTGATCCATCCACTTTCCTTGAAACGCTTGGTGGT 415
|| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 243 TTTTCTGCTATTGAAAAGGCTAAGATTGATCCATCCACATTCCTTGAAACCCTTGGTGGT 302
Query 416 CCCGAGTCTCCTGGACGAACATGGATGCTTATCTTCACCGCCGAGAAGAAACTGACGAAA 475
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 303 ACCGAGTCTCCTGGACGAACATGGATGCTCATCTTCACCGCCGAGAAGAAACTGAAGAAA 362
Query 476 GGTCGTTATTTCCCTCTAACTGCTGTTCAGAGATTTGATGCTGCGGGAAAAAGAATAGAG 535
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 363 GGTCGTTATTTCCCTCTAACCGCTGTTCAGAGATTTGATGCTGCGGGAAAAAGAATAGAG 422
Query 536 AATGGGGTGTATCTTGGTCCATTTGGAGCATTAACATTCGAAGGAAGGTTTTCATGGAAG 595
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 423 AATGGGGTGTATCTTGGTCCATTAGGAGCATTAACATTCGAAGGAAGGTTTTCTTGGAAG 482
Query 596 AATCGGATACTAGCTTTTGTCTTCGAACAGATCCGCATAAAGATTGGACCATTAGATCCT 655
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AACCGGATACTAGCTTTTGTCTTCGAACAGATCCGCATAAAGATTGGACCATTAGATCCT 542
Query 656 CTAGAGTTCAGCTTGGGGAAGAAAGACGCTGTGGAAGAGCCTAGTAATAAAGACCCTTTC 715
|||||| |||| ||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 543 CTAGAGATCAGTTTGGGGAAGAAAGACGCCGAGGAAGAGCCGAGTAATAAAGACCCTTTC 602
Query 716 TTCATTTGGTTCTACATCGATGAAGAAATAGCCGTTGCTCGAGGTAGAAGTGGCGGTACA 775
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 603 TTCATTTGGTTTTACATCGATGAAGAAATAGCCGTTGCTCGAGGAAGAAGTGGCGGTACA 662
Query 776 GCTTTCTGGTGTCGTTGTCGTCGCATTGCTTCCTAATGACTCTCTTCTACTTCTCA 831
|||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||
Sbjct 663 GCTTTCTGGTGTCGTTGTCGCCGCATTGCTTCCTCATGACTCTCTTCTTCTTCTCA 718
> Ahg920730 jgi|Araly1|920730|scaffold_102011.1
Length=1115
Score = 111 bits (60), Expect = 8e-24
Identities = 72/78 (92%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 561 GAGCATTAACATTCGAAGGAAGGTTTTCATGGAAGAATCGGATACTAGCTTTTGTCTTCG 620
||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 920 GAGCATTGACATTCGAAGGAAGGTTTTCATGGAAGAATCGGATACTAGCTTTCGTATTCA 979
Query 621 AACAGATCCGCATAAAGA 638
||||| | ||||||||||
Sbjct 980 AACAGTTTCGCATAAAGA 997
Score = 93.5 bits (50), Expect = 3e-18
Identities = 62/67 (93%), Gaps = 3/67 (4%)
Strand=Plus/Plus
Query 690 AAGA-GCCTAGTAATAAAGACCCTTTCTTCATTTGGTTCTA-CATCGATGAAGAAATAGC 747
|||| ||| ||||||||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 994 AAGACGCCGAGTAATAAAGACCCTTTCTTCATTTGGTT-TAACATCGATGAGGAAATAGC 1052
Query 748 CGTTGCT 754
|||||||
Sbjct 1053 CGTTGCT 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37284212826
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5