BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18070.3
Length=2120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472022 jgi|Araly1|472022|fgenesh2_kg.1__1976__AT1G18070.1 1786 0.0
Ahg936468 jgi|Araly1|936468|scaffold_500659.1 93.5 6e-18
Ahg923034 jgi|Araly1|923034|scaffold_104315.1 93.5 6e-18
> Ahg472022 jgi|Araly1|472022|fgenesh2_kg.1__1976__AT1G18070.1
Length=2128
Score = 1786 bits (967), Expect = 0.0
Identities = 1078/1130 (95%), Gaps = 13/1130 (1%)
Strand=Plus/Plus
Query 6 CAAAAATGAGAGCCTCATAGAAGCGGCACTAGTTCGTTTGGTGGATCCCTTAACGCG--- 62
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAAAATTAGAGCCTCATAGAAGCGGCACTAGTTCGTTTGGTGGATCCCTTAACGCGCTT 60
Query 63 CTTCTTCTTC--T-TCTTTCGCGAGATAACCTAGAAACCCTTTTCCTTTCGTTCGCTTCT 119
|||||||||| | ||||||||||||||||||||||| ||||||| |||||||| |||||
Sbjct 61 CTTCTTCTTCTTTCTCTTTCGCGAGATAACCTAGAAAACCTTTTCATTTCGTTCTCTTCT 120
Query 120 TCAATCCGCCATGGATCTTGAGGCTGAGATCCGCGCATTACAGCTTGAATCGGCAGATGA 179
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 ACAATCCGCCATGGATCTTGAGGCTGAGATCCGCGCATTACAGCTTGATTCGGCAGATGA 180
Query 180 AAACAATGGTGTTGTCATTCCAGAAGTTCATAACTCACATGAAGTTGAGAATTTGGATAA 239
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 181 AAACAATGGTGTTGTCATTCCAGAAGATCATAACTCAGATGAAGTTGAGAATTTGGATAA 240
Query 240 AGCACC-G--GAAGACTTGAAAGATGAAGTGCAAGAATCAATTCCAGTTCCTGATGAGCA 296
|||||| | |||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 241 AGCACCAGAAGAAGACTTGAAAGATGAAGTGCAAGAATCAGTCCCAGTTCCTGATGAGCA 300
Query 297 AGAAGCTTCTGAGGATCATGATGAAGTAATGCTTCATCCAGTCCATAATCCAGCGAAAGC 356
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 ACAAGCTTCTGAGGATCATGATGAAGTAATGCTTCATCCAGTCCATAACCCAGCGAAAGC 360
Query 357 TAAAGAGAAAGCTGCTCAAGAGAAGGCTGCCAAAGAGGAAGCTGAAGATGTTGCAGAAGC 416
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 361 TAAAGAGAAAGCTGCTCAAGACAAGGCTGCCAAAGAGGAAGCTGAAGATGAAGCAGAAGC 420
Query 417 AAATAAAAAGAGACACTTGAATGTTGTGTTCATTGGGCATGTTGATGCTGGTAAGTCCAC 476
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 421 AAATAAAAAGAGACACTTGAATGTGGTGTTCATTGGGCATGTTGATGCTGGTAAATCCAC 480
Query 477 AATTGGAGGACAGATTCTTTTTCTTAGTGGTCAGGTGGATGATCGACAAATCCAAAAGTA 536
|||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||
Sbjct 481 AATTGGAGGACAGATTCTTTATCTTAGCGGTCAGGTGGATGAACGACAAATCCAAAAGTA 540
Query 537 TGAGAAGGAAGCAAAAGACAAAAGTAGAGAAAGCTGGTATATGGCATATATAATGGATAC 596
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGAGAAGGAAGCAAAAGATAAAAGTAGAGAAAGCTGGTATATGGCATATATAATGGATAC 600
Query 597 AAATGAAGAAGAGAGGCTTAAGGGCAAAACAGTTGAAGTTGGAAGGGCTCACTTTGAAAC 656
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 601 AAATGAAGAAGAGAGGCTCAAGGGTAAAACAGTTGAAGTTGGAAGGGCACACTTTGAAAC 660
Query 657 GGAGAGCACTAGATTCACTATTTTAGATGCTCCGGGGCACAAGAGTTACGTACCCAATAT 716
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 TCAGAGCACTAGATTCACCATTTTGGATGCTCCGGGGCACAAGAGTTACGTACCCAATAT 720
Query 717 GATTAGTGGAGCATCTCAAGCGGACATTGGTGTGCTGGTGATTTCAGCTCGAAAAGGTGA 776
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 721 GATTAGTGGAGCATCTCAAGCTGACATCGGTGTGCTGGTGATTTCAGCTCGAAAAGGTGA 780
Query 777 ATTTGAAACAGGATATGAGAGGGGTGGGCAGACACGTGAACATGTTCAACTTGCCAAAAC 836
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATTTGAAACGGGATATGAGAGGGGTGGGCAGACACGTGAACATGTTCAACTTGCCAAAAC 840
Query 837 ATTGGGTGTCTCTAAA-CTGATTGTTGTTGTGAACAAGATGGATGACCCAACTGTGAACT 895
||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATTGGGTGTTTC-AAAGCTGATTGTTGTTGTGAACAAGATGGATGACCCAACTGTGAACT 899
Query 896 GGTCGAAAGAAAGGTACGATGAAATAGAACAAAAAATGGTACCGTTCCTGAAAGCCTCTG 955
||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||
Sbjct 900 GGTCGAAAGAAAGGTACGATGAAATTGAACAAAAAATGGTACCGTTTTTGAAGGCCTCTG 959
Query 956 GCTACAACACAAAGAAAGATGTTGTCTTCTTGCCTATATCTGGTCTAATGGGCAAAAATA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GCTACAACACAAAGAAAGATGTTGTCTTCTTGCCTATATCTGGTCTAATGGGCAAAAATA 1019
Query 1016 TGGACCAGAGGATGGGTCAAGAAA-TTTGTCCTTGGTGGAGTGGCCCTAGCTTTTTTGAA 1074
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1020 TGGACCAGAGGATGGGTCAA-AATGTTTGTCCTTGGTGGAGTGGCCCTAGCTTTTTTGAA 1078
Query 1075 GTACTTGATTCTATTGAAATTCCGCCACGCGATCCTAATGGTCCATTCAG 1124
|| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1079 GTCCTTGATTCTATTGAAATTCCGCCACGGGATCCTAATGGTCCATTCAG 1128
Score = 1369 bits (741), Expect = 0.0
Identities = 909/983 (92%), Gaps = 39/983 (4%)
Strand=Plus/Plus
Query 1156 AGGATGCCAATTATTGATAAGTTCAAGGACATGGGAACTGTTGTTATGGGAAAAGTAGAA 1215
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 AGGATGCCTATTATCGATAAGTTCAAGGACATGGGAACTGTTGTTATGGGAAAAGTAGAA 1186
Query 1216 TCTGGCAGCATTCGGGAGGGTGATTCCTTGGTTGTTATGCCGAACAAGGAACAAGTGAAA 1275
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1187 TCTGGCAGCATTAGGGAGGGTGATTCCTTGGTTGTTATGCCGAACAAGGAACATGTGAAA 1246
Query 1276 GTTGTTGCTATATATTGCGATGAGGATAAAGTTAAGCGTGCAGGACCGGGTGAGAATTTG 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 GTTGTTGCTATATATTGCGATGAGGATAAAGTTAAGCGTGCAGGACCGGGTGAGAATTTG 1306
Query 1336 AGAGTTCGTATTACTGGCATTGAAGATGAGGACATCCTTTCTGGTTTTGTTTTATCCAGC 1395
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1307 AGAGTTCGTATTACTGGCATTGAAGATGAGGACATCCTTGCTGGTTTTGTTTTATCCAGC 1366
Query 1396 ATTGTAAACCCTGTCCCTGCTGTTACCGAGTTTGTTGCCCAACTACAAATCCTTGAGCTG 1455
||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1367 ATTGTTAACCCTGTCCCTGTTGTTACTGAGTTTGTTGCCCAACTACAAATCCTTGAGCTT 1426
Query 1456 CTTGACAACGCTATTTTTACAGCTGGTTACAAGGCAATTCTCCACATCCATGCGGTTGTC 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 CTTGACAACGCTATTTTTACAGCTGGTTACAAGGCAATTCTCCACATCCATGCGGTTGTC 1486
Query 1516 GAGGAGTGTGAGATTATCGAATTGAAAAGCCAAATTGATCTCAAGACAAGGAAACCAATG 1575
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1487 GAGGAGTGTGAGATTATTGAATTGAAAAGCCAAATTGATCTCAAAACAAGGAAACCAATG 1546
Query 1576 AAAAAGAAAGTTTTGTTTGTGAAGAATGGTGCTGCTGTTGTGTGCCGCATCCAGGTTACG 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 AAAAAGAAAGTTTTGTTTGTGAAGAATGGTGCTGCTGTTGTGTGCCGCATCCAGGTTACG 1606
Query 1636 AATTCAATTTGTATTGAAAAATTCTCAGATTTCCCTCAACTTGGAAGATTCACTCTACGA 1695
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1607 AATTCAATTTGTATTGAAAAATTCTCGGATTTCCCTCAACTTGGAAGATTCACTCTACGA 1666
Query 1696 ACTGAAGGAAAAACAATTGCTGTTGGAAAGGTTACCGAGCTCTTAAGTTCTGTCTCAAGC 1755
|| ||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||||
Sbjct 1667 ACGGAAGGAAAAACAATTGCGGTTGGAAAGGTTACTGAGCTCTTAAGTGCTGCCTCAAGC 1726
Query 1756 GCTTGATCCAAATTTTGTGAGAGAAAAGCAGGAGACGGCTTTCGGGTTGCACCAGGAGGG 1815
||||||||||||||||| |||||||||| | |||||||||||||||||||||| |||||
Sbjct 1727 GCTTGATCCAAATTTTGCGAGAGAAAAG--G-AGACGGCTTTCGGGTTGCACCAAGAGGG 1783
Query 1816 AGATTA---GGAAAACGCTTCATGAA---TGATTCGGACTAAGAAATCTGAGTTCCCTAA 1869
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1784 AGATTATTAGGAAAACGCTTCATGAAGGATGATTCGGACTAAGAAATCTGAGTTCCCTAA 1843
Query 1870 AACCCAAGTCCTAATACC-TGtttttttCAGTGCACAGTTGAG-----A--TTTACAAGC 1921
||||||||| |||||||| | |||||||||||||||||||||| | |||||||||
Sbjct 1844 AACCCAAGTTCTAATACCCT-TTTTTTTCAGTGCACAGTTGAGGTTTGAGATTTACAAGC 1902
Query 1922 TGCGGAGAGGTGTTACCTGAGACCGATTTTCCTTTATATTTCAAAGCTAGAGAGAATTAT 1981
||||||||||||| ||||||||||| ||||| | | ||||| | ||||
Sbjct 1903 TGCGGAGAGGTGTAACCTGAGACCGGTTTTC----A---------G--AGAGA-A-TTAT 1945
Query 1982 GATGAACGTGAGTGAGAGTTTACTTTTCTTTCAAATTAAATTAACAGTTAATACGACTAC 2041
|||||| ||||||||||||| |||||||||||| ||||||| ||| |||||||||||||
Sbjct 1946 GATGAAATTGAGTGAGAGTTTTCTTTTCTTTCAAGTTAAATTTACAATTAATACGACTAC 2005
Query 2042 CTCCCTTTTGGCTGGC-GAGTATGTTTTTTGGCTATTTGGAGATTGATATTTCATAGTTG 2100
|||||||||||||| | || | ||||||| |||||||||||||||| |||||||||||||
Sbjct 2006 CTCCCTTTTGGCTGACTGAATCTGTTTTTCGGCTATTTGGAGATTGCTATTTCATAGTTG 2065
Query 2101 AAGAA-ACTC-T-ATTCGTTCCT 2120
| ||| || | | ||||||||||
Sbjct 2066 AGGAACACACATTATTCGTTCCT 2088
> Ahg936468 jgi|Araly1|936468|scaffold_500659.1
Length=221
Score = 93.5 bits (50), Expect = 6e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 301 GCTTCTGAGGATCATGATGAAGTAATGCTTCATCCAGTCCATAATCCAGCGAAAGC 356
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 25 GCTTCTGAGAATCATGATGAAGTAATGCTTCATCCAGTCCATAACCCAGCGAAAGC 80
> Ahg923034 jgi|Araly1|923034|scaffold_104315.1
Length=221
Score = 93.5 bits (50), Expect = 6e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 301 GCTTCTGAGGATCATGATGAAGTAATGCTTCATCCAGTCCATAATCCAGCGAAAGC 356
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 25 GCTTCTGAGAATCATGATGAAGTAATGCTTCATCCAGTCCATAACCCAGCGAAAGC 80
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79760973030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5