BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18080.1
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920734 jgi|Araly1|920734|scaffold_102015.1 1805 0.0
Ahg929678 jgi|Araly1|929678|scaffold_302135.1 787 0.0
Ahg474002 jgi|Araly1|474002|fgenesh2_kg.1__3956__AT1G48630.1 767 0.0
> Ahg920734 jgi|Araly1|920734|scaffold_102015.1
Length=1101
Score = 1805 bits (977), Expect = 0.0
Identities = 1060/1101 (96%), Gaps = 2/1101 (0%)
Strand=Plus/Plus
Query 28 ATAGCTTCTTGTGTTTTTCACGCCCTTCTTCTTTGTATTTCCGCCTCCCCCGAGAAAACG 87
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAGCTTCTTCTGTTTTTCTCGCCCTTCTTCTTTGTATTTCCGCCTCCCCCGAGAAAACG 60
Query 88 AAAACCCTAGTTTCAGAGGCATCTCCAGACACCGAAAATGGCGGAAGGACTCGTTTTGAA 147
|||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 AAAACCCTAGCTTCAGAGACATCTCCAGTCACCGAAAATGGCGGAAGGACTCGTTTTGAA 120
Query 148 GGGCACCATGCGTGCACACACTGACATGGTGACGGCAATCGCCACCCCAATCGATAACGC 207
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGGCACCATGCGTGCACACACTGACATGGTGACGGCAATCGCCACCCCAATCGATAACGC 180
Query 208 AGACATCATCGTCTCAGCTTCCCGCGACAAATCCATCATTTTGTGGAAACTCACCAAGGA 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGACATCATCGTCTCAGCTTCCCGCGACAAATCCATCATTTTGTGGAAACTCACCAAGGA 240
Query 268 CGACAAAGCCTACGGTGTAGCTCAGAGGCGTCTCACTGGTCACTCTCACTTCGTTGAGGA 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGACAAAGCCTACGGTGTAGCTCAGAGGCGTCTCACTGGTCACTCTCACTTCGTTGAGGA 300
Query 328 TGTTGTTCTCTCCTCCGATGGACAATTCGCGCTTTCCGGCAGCTGGGACGGCGAGCTCCG 387
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 TGTTGTTCTCTCCTCCGATGGACAATTCGCGCTTTCCGGTAGCTGGGACGGCGAGCTCCG 360
Query 388 TCTTTGGGATCTTGCTGCTGGTGTCTCCACTCGTAGATTCGTTGGACACACCAAGGACGT 447
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTTTGGGATCTCGCTGCTGGTGTCTCCACTCGTAGATTCGTTGGACACACCAAGGACGT 420
Query 448 GCTCTCCGTCGCCTTCTCACTCGACAACCGTCAGATCGTCTCTGCATCTCGTGACCGTAC 507
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 GCTCTCCGTCGCATTCTCACTCGACAACCGTCAGATCGTCTCTGCGTCTCGTGACCGTAC 480
Query 508 GATCAAGCTGTGGAACACTCTTGGTGAGTGCAAGTACACCATTTCAGAAGGTGGTGAGGG 567
||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 481 GATCAAGCTATGGAACACTCTAGGTGAGTGCAAGTACACGATCTCAGAAGGTGGTGAGGG 540
Query 568 ACACCGTGATTGGGTTAGCTGCGTCAGATTCAGCCCTAACACGCTTCAGCCGACGATTGT 627
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 541 ACACCGTGATTGGGTTAGCTGCGTCAGATTCAGCCCCAACACTCTCCAGCCGACGATTGT 600
Query 628 ATCTGCTTCGTGGGACAAGACCGTGAAAGTGTGGAACCTTTCGAACTGCAAGCTCAGATC 687
|| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 601 GTCAGCTTCGTGGGACAAAACCGTGAAAGTGTGGAACCTCTCGAACTGCAAGCTCAGATC 660
Query 688 GACTCTTGCTGGTCACACCGGTTACGTGAGCACTGTGGCTGTATCACCTGATGGTTCTCT 747
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 661 GACTCTTGCTGGTCACACCGGATACGTGAGCACGGTGGCTGTATCACCTGATGGTTCTCT 720
Query 748 TTGTGCAAGTGGAGGCAAAGACGGTGTTGTTTTGCTGTGGGATTTGGCTGAGGGGAAGAA 807
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 721 TTGTGCAAGTGGAGGCAAAGACGGTGTGGTTTTGCTTTGGGATTTGGCTGAGGGGAAGAA 780
Query 808 GCTTTACTCTCTTGAAGCTAACTCTGTGATCCATGCTCTTTGCTTCAGTCCCAACAGGTA 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCTTTACTCTCTTGAAGCTAACTCTGTGATCCATGCTCTTTGCTTCAGTCCCAACAGGTA 840
Query 868 CTGGCTCTGTGCTGCAACTGAACATGGTATTAAGATTTGGGACCTTGAGAGCAAGAGCAT 927
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 841 CTGGCTCTGTGCTGCAACTGAACAAGGTATCAAGATTTGGGACCTGGAGAGCAAGAGCAT 900
Query 928 TGTTGAGGATTTGAAGGTTGATCTCAAGGCTGAGGCTGAAAAGGCTGACAACAGTGGTCC 987
|||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||
Sbjct 901 CGTTGAGGATTTGAAGGTTGACCTCAAGGCTGAGGCTGAGAAGTCTGACAACAGTGGTCC 960
Query 988 TGCTGCCACCAAGAGGAAGGTTATTTACTGCACAAGCCTT-AACTGGAGCGCTGATGGAA 1046
|||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 961 TGCTGCCACCAAGAGGAAGGTTATTTACTGTACAAGT-TTGAACTGGAGCGCTGATGGAA 1019
Query 1047 GCACCCTCTTCAGTGGTTACACCGATGGAGTCATTAGAGTTTGGGGTATTGGTCGTTACT 1106
||||| | ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1020 GCACCTTGTTCAGTGGTTATACCGATGGAGTCATCAGAGTTTGGGGTATTGGTCGTTACT 1079
Query 1107 AGTAATCTCATCACTTGTGCT 1127
|||||||||| ||||||||||
Sbjct 1080 AGTAATCTCACCACTTGTGCT 1100
> Ahg929678 jgi|Araly1|929678|scaffold_302135.1
Length=1074
Score = 787 bits (426), Expect = 0.0
Identities = 815/1001 (81%), Gaps = 34/1001 (3%)
Strand=Plus/Plus
Query 125 ATGGCGGAAGGACTCGTTTTGAAGGGCACCATGCGTGCACACACTGACATGGTGACGGCA 184
||||| || |||||||| ||||||||||| ||||| || ||||| |||||||| || ||
Sbjct 71 ATGGCCGAGGGACTCGTATTGAAGGGCACTATGCGGGCTCACACCGACATGGTCACCGCC 130
Query 185 ATCGCCACCCCAATCGATAACGCAGACATCATCGTCTCAGCTTCCCGCGACAAATCCATC 244
||||| || |||||||| || | |||||||||||| |||| || || ||||||||||||
Sbjct 131 ATCGCTACACCAATCGACAATTCCGACATCATCGTCACAGCGTCGCGTGACAAATCCATC 190
Query 245 ATTTTGTGGAAACTCACCAAGGACGACAAAG-CCTACGGTGTAGCTCAGAGGCGTCTCAC 303
|| | ||||||||||||||||||||| ||| | |||||||| |||||| | | |||||
Sbjct 191 ATCCTCTGGAAACTCACCAAGGACGAC-AAGTCTTACGGTGTTGCTCAGCGTAGGCTCAC 249
Query 304 TGGTCACTCTCACTTCGTTGAGGATGTTGTTCTCTCCTCCGATGGACAATTCGCGCTTTC 363
||||||||||||||||| || |||||||||||||| || || || || || || || ||
Sbjct 250 AGGTCACTCTCACTTCGTCGAAGATGTTGTTCTCTCATCGGACGGTCAGTTTGCACTCTC 309
Query 364 CGGCAGCTGGGACGGCGAGCTCCGTCTTTGGGATCTTGCTGCTGGTGTCTCCACTCGTAG 423
||| ||||||||||| ||||||||||| |||||||| ||| |||||||||||||||| ||
Sbjct 310 CGGAAGCTGGGACGGTGAGCTCCGTCTCTGGGATCTCGCTACTGGTGTCTCCACTCGCAG 369
Query 424 ATTCGTTGGACACACCAAGGACGTGCTCTCCGTCGCCTTCTCACTCGACAACCGTCAGAT 483
|||||| |||||||| || || |||||||| || || ||||| | || |||||||||||
Sbjct 370 ATTCGTCGGACACACGAAAGATGTGCTCTCTGTAGCATTCTCTGTTGATAACCGTCAGAT 429
Query 484 CGTCTCTGCATCTCGTGACCGTACGATCAAGCTGTGGAACACTCTTGGTGAGTGCAAGTA 543
||| || || |||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 430 CGTATCAGCGTCTCGTGACCGTACGATCAAGCTGTGGAACACACTCGGTGAATGCAAGTA 489
Query 544 CACCATTTC--AG-AAGGTGGTGAGGGACACCGTGATTGGGTTAGCTGCGTCAGATTCAG 600
||| || || || |||| | || | ||| | || ||| ||||||| || || || ||
Sbjct 490 CACGATCTCTGAGCAAGGAGATG-GTCACAA-G-GAATGGATTAGCTGTGTGAGGTTTAG 546
Query 601 CCCTAACACGCTTCAGCCGACGATTGTATCTGCTTCGTGGGA-CAAGACCGTGAAAGTGT 659
||||||||||||| ||| || ||||| |||||||| ||||| || ||||||||||| |
Sbjct 547 CCCTAACACGCTTGTGCCTACCATTGTTTCTGCTTCTTGGGATCAC-ACCGTGAAAGTCT 605
Query 660 GGAACCTTTC-GAACTGCAAGCTCAG-ATCGACTCTTGCTGGTCACACCGGTTACGTGAG 717
|||| || | |||||| ||||| || | | |||||| ||||||| | |||||| | |
Sbjct 606 GGAATCTC-CAGAACTGTAAGCTGAGGAACT-CTCTTGTTGGTCACTCTGGTTACCTCAA 663
Query 718 CACTGTGGCTGTATCACCTGATGGTTCTCTTTGTGCAAGTGGAGGCAAAGACGGTGTTGT 777
|||||||||||| || ||||||||||| || || || ||||| || ||||| |||||| |
Sbjct 664 CACTGTGGCTGTCTCGCCTGATGGTTCGCTATGCGCCAGTGGTGGGAAAGATGGTGTTAT 723
Query 778 TTTGCTGTGGGATTTGGCTGAGGGGAAGAAGCTT-TACTCTCTTGAAGCTAACTCTG-TG 835
||| |||||||||||||||| || |||||| || || || ||||| ||| ||| | |
Sbjct 724 CTTGTTGTGGGATTTGGCTGAAGGAAAGAAG-TTGTATTCGCTTGAGGCTGGCTC-GATT 781
Query 836 ATCCA-TGCTCTTTGCTTCAGTCCCAACAGGTACTGGCTCTGTGCTGCAACTGA-ACATG 893
|| || | | |||||||||||||| ||||| |||||| | |||||||| ||||| | ||
Sbjct 782 ATTCACT-CGCTTTGCTTCAGTCCTAACAGATACTGGTTGTGTGCTGCTACTGAGA-ATA 839
Query 894 GTATTAAGATTTGGGACCTTGAGAGCAAGAGCA-TTGTTGAGGATTTGAAGGTTGATCTC 952
| |||||||| ||||| |||||||||||| | |||||||||| ||||||||||||||
Sbjct 840 GCATTAAGATATGGGATCTTGAGAGCAAGT-CTGTTGTTGAGGACTTGAAGGTTGATCTT 898
Query 953 AAGGCTGAGGCTGAAAAGGCTGACAACAGTGGTCCTG---CTGCCA-CCAAGAGGAAGGT 1008
||||||||||| || ||| |||| ||||| || ||| | ||| || ||||||
Sbjct 899 AAGGCTGAGGCAGAGAAGACTGATG---GTGGTGTTGGAACTGGTAACCA-GAAGAAGGT 954
Query 1009 TATTTACTGCACAAGCCTTAA-CTGGAGCGCTGATGGAAGCACCCTCTTCAGTGGTTACA 1067
||||||||||||||| |||| |||||| || ||||||||||| | |||||||||||||
Sbjct 955 GATTTACTGCACAAGC-TTAAACTGGAGTGCAGATGGAAGCACATTGTTCAGTGGTTACA 1013
Query 1068 CCGATGGAGTCATTAGAGTTTGGGGTATTGGTCGTTACTAG 1108
| |||||||| | ||||| |||||||||||||||||||||
Sbjct 1014 CTGATGGAGTTGTCAGAGTCTGGGGTATTGGTCGTTACTAG 1054
> Ahg474002 jgi|Araly1|474002|fgenesh2_kg.1__3956__AT1G48630.1
Length=1170
Score = 767 bits (415), Expect = 0.0
Identities = 809/998 (81%), Gaps = 31/998 (3%)
Strand=Plus/Plus
Query 125 ATGGCGGAAGGACTCGTTTTGAAGGGCACCATGCGTGCACACACTGACATGGTGACGGCA 184
||||| ||||||||||| ||||| ||||| ||| |||| |||||||||||||| || ||
Sbjct 13 ATGGCTGAAGGACTCGTGTTGAAAGGCACAATGTGTGCCCACACTGACATGGTCACCGCC 72
Query 185 ATCGCCACCCCAATCGATAACGCAGACATCATCGTCTCAGCTTCCCGCGACAAATCCATC 244
|||||||| || ||||||| | ||| | ||||| | | || || |||||||| |||
Sbjct 73 ATCGCCACACCGGTCGATAATTCCGACGTTATCGTGACCTCGTCGCGTGACAAATCAATC 132
Query 245 ATTTTGTGGAAACTCACCAAGGACGACAAAG-CCTACGGTGTAGCTCAGAGGCGTCTCAC 303
|| | ||||||||||| ||||| ||| ||| | |||||||| |||||| || | | ||
Sbjct 133 ATCCTCTGGAAACTCACAAAGGAAGAC-AAGTCTTACGGTGTTGCTCAGCGGAGGATGAC 191
Query 304 TGGTCACTCTCACTTCGTTGAGGATGTTGTTCTCTCCTCCGATGGACAATTCGCGCTTTC 363
||||||||||||||||||| | || ||||||||||||||||||||||||||||| || ||
Sbjct 192 TGGTCACTCTCACTTCGTTCAAGACGTTGTTCTCTCCTCCGATGGACAATTCGCTCTCTC 251
Query 364 CGGCA-GCTGGGACGGCGAGCTCCGTCTTTGGGATCTTGCTGCTGGTGTCTCCACTCGTA 422
||| | ||||||||| ||||| ||||| |||||||| || | |||| || ||||||
Sbjct 252 CGG-ATCCTGGGACGGTGAGCTTCGTCTCTGGGATCTCGCCACCGGTGAATCAACTCGTC 310
Query 423 GATTCGTTGGACACACCAAGGACGTGCTCTCCGTCGCCTTCTC-ACTCGACAACCGTCAG 481
| |||||||| ||||| || || || ||||| || || ||||| ||| || |||||||||
Sbjct 311 GTTTCGTTGGTCACACGAAAGATGTTCTCTCTGTTGCTTTCTCTACT-GATAACCGTCAG 369
Query 482 ATCGTCTCTGCATCTCGTGACCGTACGATCAAGCTGTGGAACACTCTTGGTGAGTGCAAG 541
||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||||| |||
Sbjct 370 ATCGTCTCTGCTTCTCGTGATCGTACGATTAAGCTTTGGAACACACTTGGTGAGTGTAAG 429
Query 542 TACACCATTTCAGAAGGTGGTGAGGGACACCGTGATTGGGTTAGCTGCGTCAGATTCAGC 601
|| || || || |||| || || | ||| | || |||||||| || || || || ||
Sbjct 430 TATACAATCTCTGAAGCTGATG-GTCACA-AG-GAATGGGTTAGTTGTGTTAGGTTTAGT 486
Query 602 CCTAACACGCTTCAGCCGACGATTGTATCTGCTTCGTGGGACAAGACCGTGAAAGTGTGG 661
||||| || ||| ||| || |||||||||||||| ||||| || || ||||||||||||
Sbjct 487 CCTAATACTCTTGTGCCAACCATTGTATCTGCTTCTTGGGATAAAACTGTGAAAGTGTGG 546
Query 662 AACCTTTC-GAACTGCAAGCTCA-GATCGACTCTTGCTGGTCACACCGGTTACGTGAGCA 719
|| | | | ||| || ||||| | || | ||||||||||||||| | |||||| ||| ||
Sbjct 547 AATC-TCCAGAATTGTAAGCTTAGGAAC-ACTCTTGCTGGTCACTCTGGTTACTTGAACA 604
Query 720 CTGTGGCTGTATCACCTGATGGTTCTCTT-TGTGCAAGTGGAGGCAAAGACGGTGTTG-T 777
|||||||||| |||||||||||||| || ||||| ||||| || ||||| |||| || |
Sbjct 605 CTGTGGCTGTGTCACCTGATGGTTC-GTTATGTGCCAGTGGTGGGAAAGATGGTG-TGAT 662
Query 778 TTTGCTGTGGGATTTGGCTGAGGGGAAGAAGCTT-TACTCTCTTGAAGCTAACTCTGTGA 836
||||| |||||||||||||| ||||||||| || || |||||||| ||| |||| | |
Sbjct 663 CTTGCTTTGGGATTTGGCTGAAGGGAAGAAG-TTGTATTCTCTTGAGGCTGGCTCTATTA 721
Query 837 TCCATGCTCTTTGCTTCAGTCCCAACAGGTACTGGCTCTGTGCTGCAACTGA-ACATGGT 895
| ||| | ||||||||||||||||| ||||||||||||||||| ||||| || | || |
Sbjct 722 TTCATTCACTTTGCTTCAGTCCCAATAGGTACTGGCTCTGTGCAGCAACAGAGA-ATAGC 780
Query 896 ATTAAGATTTGGGACCTTGAGAGCAAGAGCATTGTTGAGGATTTGAAGGTTGATCTCAAG 955
|||| ||||||||| |||||||| ||| | ||||||||||||||||||||||||| |||
Sbjct 781 ATTAGGATTTGGGATCTTGAGAGTAAGTGTGTTGTTGAGGATTTGAAGGTTGATCTTAAG 840
Query 956 GCTGAGGCTGAAAAGGCTGA--CAAC-AGTGGT-CCTGCTGCCACCAAGAGGAAGGTTAT 1011
|||||||||| ||| |||| | || | ||| || | | || |||| ||||| ||
Sbjct 841 ACTGAGGCTGAGAAGTCTGATGCTACTACTGGAACC-G--GAAAC-AAGACTAAGGTGAT 896
Query 1012 TTACTGCACAAGCCTT-AACTGGAGCGCTGATGGAAGCACCCTCTTCAGTGGTTACACCG 1070
||||||||||||| || |||||||| || ||||||||||| | |||||||| ||||| |
Sbjct 897 TTACTGCACAAGC-TTGAACTGGAGTGCAGATGGAAGCACTTTGTTCAGTGGCTACACTG 955
Query 1071 ATGGAGTCATTAGAGTTTGGGGTATTGGTCGTTACTAG 1108
||||||| || || |||||||||||||||||||| |||
Sbjct 956 ATGGAGTTATCAGGGTTTGGGGTATTGGTCGTTATTAG 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50817848361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5