BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18090.1
Length=1879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920735 jgi|Araly1|920735|scaffold_102016.1 2745 0.0
> Ahg920735 jgi|Araly1|920735|scaffold_102016.1
Length=1774
Score = 2745 bits (1486), Expect = 0.0
Identities = 1681/1777 (95%), Gaps = 6/1777 (0%)
Strand=Plus/Plus
Query 19 AAGAAGATAAGAAATCGGAAATGGGCATCAAGGACCTTCTCAGATTCATGAAACCTTATA 78
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AAGAAGATAAGAAATCGGAAATGGGCATCAAGGACCTTCTCAGATTCATGAAACCTTACA 60
Query 79 TCCTTCCCATTCACATCCAGAAATACGCCGGGAAACGAGTGGGAATCGATGCTTATTCAT 138
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TCCTTCCCATTCACATCCAGAAATACGCCGGGAAACGAGTGGGAATCGATGCATATTCAT 120
Query 139 GGCTACACAAAGGAGCATACTCATGTAGTATGGAGTTGTGTTTAGACACTGATGGGAAGA 198
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GGCTACACAAAGGAGCATACTCATGTAGTATGGAGCTGTGTTTAGACACTGATGGGAAGA 180
Query 199 AGAAGCTGAGGTACATTGATTACTTTATGCATAGAGTCAACCTTCTTCAACACTATGAGA 258
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 181 AGAAGCTGAGGTACATTGATTACTTCATGCACAGAGTCAACCTTCTTCAACACTATGAGA 240
Query 259 TCATTCCTGTCGTTGTTCTCGATGGTGGTAATATGCCCTGCAAGGCTGCCACTGGTGATG 318
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 TCATCCCTGTCGTTGTTCTCGATGGTGGTAATATGCCCTGCAAGGCTGCCACTGGAGATG 300
Query 319 AACGTCATAGGAAGCGAAAGGCTAACTTTGACGCTGCAATGGTGAAGCTGAAGGAAGGGA 378
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 AACGTCATAGGAAGCGAAAGGCTAACTTTGACGCTGCAATGGTGAAGCTTAAGGAAGGGA 360
Query 379 ATGTCGCAGCAGCTACTGAGCTTTTTCAGAGAGCAGTTAGTGTAACATCATCCATGGCTC 438
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGTCGGAGCAGCAACTGAGCTTTTTCAGAGAGCAGTTAGTGTAACATCATCCATGGCTC 420
Query 439 ATCAATTGATTCAGGTTCTGAAATCAGAAAACGTCGAATTTATTGTAGCTCCCTATGAGG 498
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 421 ATCAATTGATTCAGGTTCTGAAATCAGAGAACGTCGAGTTTATTGTAGCTCCCTATGAGG 480
Query 499 CTGATGCTCAGCTAGCATACCTATCCAGCCTCGAACTGGAACAAGGCGGGATTGCTGCTG 558
|||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |
Sbjct 481 CTGATGCTCAGCTAGCATACCTATCCAGCCTCGATCTGGAACATGGTGGGATTGCTGCAG 540
Query 559 TTATAACCGAAGACAGCGATTTACTTGCATATGGCTGCAAAGCTGTTATCTTTAAGATGG 618
|||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 TTATTACCGAGGACAGTGATTTACTTGCATATGGCTGCAAAGCTGTTATTTTTAAGATGG 600
Query 619 ACCGCTATGGTAAAGGAGAGGAACTAGTTCTAGATAATGTTTTTCAAGCTGTTGATCAAA 678
|||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 601 ACCGCTATGGTAAAGGAGAGGAACTAATTCTAGATAATGTTTTCCAAGCCGTTGATCAAA 660
Query 679 AGCCTTCCTTCCAGAATTTTGATCAAGAGCTATTCACTGCAATGTGCGTATTGGCGGGCT 738
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 AGCCTTCCTTCCAGAATTTTGATCAAGAGCTATTCACTGCAATGTGCGTATTAGCGGGCT 720
Query 739 GTGATTTTCTCCCCTCGGTTCCTGGTGTTGGTATTTCAAGAGCTCATGCATTCATCTCCA 798
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 721 GTGATTTTCTCCCATCGGTTCCTGGTGTTGGCATTTCAAGAGCTCATGCATTCATCTCCA 780
Query 799 AGTACCAGAGTGTAGAAC-TCGTTTTGTCATTTCTCAAGACaaaaaaaGGCAAACTAGTT 857
|||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 781 AGTACCAGAGTGTAGAACGT-GTTTTGTCATTTCTCAAGACAAAAAAGGGCAAACTAGTT 839
Query 858 CCTGATGATTATTCCAGCTCTTTCACGGAAGCAGTTTCAGTTTTTCAGCACGCACGTGTA 917
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 840 CCTGATGATTATTCCAGCTCTTTCACGGAAGCAGTTTCAGTTTTTCAGCATGCTCGTGTA 899
Query 918 TATGACTTTGACGCTAAGAAGCTCAAGCACTTGAAACCCCTCTCCCACAACCTCCTGAAT 977
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 900 TATGACTTTGATGCTAAGAAGCTCAAGCACTTGAAACCCCTCTCCCAGAACCTCCTGAAT 959
Query 978 TTACCAGTTGAACAACTTGAGTTCCTGGGACCAGATCTGTCGCCATCTGTTGCTGTTGCA 1037
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 960 TTACCAGTTGGACAACTTGAGTTCCTGGGACCAGATCTATCGCCATCTGTTGCTGCTGCA 1019
Query 1038 ATTGCTGAAGGTAATGTTGATCCCATAACCATGAAAGCTTTTAACCACTTCTCGGTTTCT 1097
|||||||||||||| ||||||||||||||||| | |||||||||| |||||||||| ||
Sbjct 1020 GTTGCTGAAGGTAATATTGATCCCATAACCATGGAGGCTTTTAACCGCTTCTCGGTTCCT 1079
Query 1098 AGGAAACCGTTG-AAGACGCCTGTTCGATCATTCAAGGAACAGGAAAAGGGAAGCTCCTT 1156
|||| || |||| || | |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1080 AGGAGACAGTTGCAAAA-GCCTGTTCGATCATTCAAGGAACAGGAAAAGGAAAGCTCCTT 1138
Query 1157 TTTGGTATGTTCTTTGTCTAAAAGTGAGGAAATAATAGAGCTCAAAAGGACTGCAGATGA 1216
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1139 TTTGGTGTGTTCTTCGTCTAAAAGTGAGGAAAGAATAGAGCTCAAAAGGACTGCAGATGA 1198
Query 1217 AGCTATGATTGATCCAGAAGCTATTGTGAAGAAGAAGATGTACTCTAAACAAGATTCAGA 1276
||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 1199 AGCTATGATTGATCCAGAAGCTACTCTGAAGAAGGCGATGTACTCTAAACAAGATTCAGA 1258
Query 1277 TCTATACAAACTGCTTGCGCAGCCTAACAGGGATCAAGTGGTTACCC-GACCCAGCAATC 1335
|||| ||||||||||| ||||||||||||||||||| ||||||| || | ||||||||||
Sbjct 1259 TCTACACAAACTGCTTTCGCAGCCTAACAGGGATCAGGTGGTTATCCAG-CCCAGCAATC 1317
Query 1336 CCTCACTTATTCCGGACAACAACCCGTTCAAGATTAGAAAAACCGATGAAATCAATCTGG 1395
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1318 TCTCACTTATTCCAGACAACAACCCGTTCAAGATAAGAAAAACCGATGAAATCAATCTAG 1377
Query 1396 AAATCGCAGAATACGGTGTGCAAGAACTCGCTGATTCGTTTGTGACCAAAAGCAAAGCAG 1455
|| | ||||| |||||| ||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1378 AATTTGCAGAGTACGGTTTGCAAGAACTCGCTGTTTCATTTGTGACCAAAAGCAAAGCAA 1437
Query 1456 TGGACGTGGCTTCTTCTTCACCAAACTCTCACGAACACGAGGATCAAAAAGAGTGTGTTA 1515
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1438 CGGACGTGGCTTCTTCTTCACCAAACTCTCACGGACACGAGGATCAAAAAGAGGGTGTTA 1497
Query 1516 CAATCGATCTGTCCAAACTTGATGCCGCTGGAATCAAACAGGACAGTGAGAAGAACAGAG 1575
|||||||| || |||| ||||| | ||||||||||||| ||| || |||||||| ||
Sbjct 1498 CAATCGATTTGCCCAAGCTTGAAGATTCTGGAATCAAACAAGACTCTGCGAAGAACACAG 1557
Query 1576 TGAAAGAAACATTTGAAACAACAGAAGTAGATCTAGCTGAAGTTCAAGATCATGTGAACA 1635
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1558 TGAAAGAAACATTTGAAACAACAGAGGTAGATATAGCTGAAGTTCAAGATCATGTGAACA 1617
Query 1636 TGACGACAAAGAGAGTGCGTGGAACAAAACCTAGAACCGAGAATTTCAAAGTGAAAACAA 1695
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1618 TGACGACAAAGAGAGTGCGTGGAGCAAAACCTAGAACCGAGAGTTTCAAAGTGAAAACAA 1677
Query 1696 GCTGTAAAAGTTCAGAGAACAACAAGACTATAATCAAGAAGAAACACAGTATATTAGATT 1755
||||||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||||
Sbjct 1678 GCTGTAAAAATTCAGAGAACAAGAAGACTACAATCAAGAAAAAACACAGTATATTAGATT 1737
Query 1756 TCTTCCAGCGATTGTAATCTCTTTAATTTTGGTATGT 1792
||||||| |||||||||||||||||||||||||||||
Sbjct 1738 TCTTCCATCGATTGTAATCTCTTTAATTTTGGTATGT 1774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581223985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5