BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18100.1
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920736 jgi|Araly1|920736|scaffold_102017.1 894 0.0
Ahg920735 jgi|Araly1|920735|scaffold_102016.1 732 0.0
> Ahg920736 jgi|Araly1|920736|scaffold_102017.1
Length=564
Score = 894 bits (484), Expect = 0.0
Identities = 537/563 (95%), Gaps = 2/563 (0%)
Strand=Plus/Plus
Query 57 ATATCTCCCTCCCCGCTGATCGATGGCGGCTTCTGTTGATCCTTTGGTGGTCGGAAGAGT 116
||||||||||| | | | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATATCTCCCTCTCTGTTAATCGATGGCAGCTTCTGTTGATCCTTTGGTGGTCGGAAGAGT 60
Query 117 GATCGGAGATGTGTTGGACATGTTCATCCCAACCGCCAATATGTCTGTCTACTTTGGCCC 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GATCGGAGATGTGTTGGACATGTTCATCCCAACCGCCAATATGTCTGTCTACTTCGGCCC 120
Query 177 CAAACACATCACTAACGGCTGCGAGATCAAACCCTCCACCGCAGTCAATCCTCCAAAAGT 236
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CAAACACATCACCAACGGCTGCGAGATTAAACCCTCCACCGCAGTCAATCCTCCAAAAGT 180
Query 237 CAACATCTCGGGCCATTCCGATGAGCTTTACACTCTCGTGATGACTGACCCGGACGCACC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAACATCTCGGGCCATTCCGATGAGCTTTACACTCTCGTGATGACTGACCCGGACGCACC 240
Query 297 TAGCCCAAGCGAGCCGAACATGAGAGAATGGGTCCACTGGATTGTCGTGGATATTCCCGG 356
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 TAGCCCAAGCGAGCCGAACATGAGAGAATGGGTCCATTGGATTGTCGTGGATATTCCCGG 300
Query 357 AGGCACAAATCCCTCAAGAGGAAAAGAGATACTTCCATACATGGAACCAAGGCCACCAGT 416
|||||| || ||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 301 AGGCACCAACCCCTCGAGAGGAAAGGAGATACTTCCATACATGGAACCAAGACCACCAGT 360
Query 417 GGGGATTCACCGTTACATATTGGTACTTTTCCGGCAAAACTCACCGGTGGGTCTGATGGT 476
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGGGATCCACCGTTACATTTTGGTACTTTTCCGGCAAAACTCACCGGTGGGTCTGATGGT 420
Query 477 GCAGCAGCCTCCATCACGAGCCAATTTCAGCACACGAATGTTCGCTGGACATTTCGATCT 536
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 421 GCAGCAGCCGCCATCACGAGCCAATTTCAGCACCCGCATGTTCGCTGGACATTTCGATCT 480
Query 537 TGGTCTACCTGTGGCCACTGTCTATTTCAACGCCCAAAAGGAACCTGCTTCACGCAGACG 596
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 481 TGGTCTACCTGTGGCCACGGTCTACTTCAACGCCCAAAAGGAGCCTGCTTCACGCAGACG 540
Query 597 CTAGTACAA-AAAGTAAACAAAT 618
||||||||| ||| |||| |||
Sbjct 541 CTAGTACAAGAAAC-AAACTAAT 562
> Ahg920735 jgi|Araly1|920735|scaffold_102016.1
Length=1774
Score = 732 bits (396), Expect = 0.0
Identities = 479/520 (92%), Gaps = 2/520 (0%)
Strand=Plus/Minus
Query 914 ACATACCAAAATTAAAGAGATTACAATCGCTGGAAGAAATCTAATATACTGTGTTTCTTC 973
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1774 ACATACCAAAATTAAAGAGATTACAATCGATGGAAGAAATCTAATATACTGTGTTTTTTC 1715
Query 974 TTGATTATAGTCTTGTTGTTCTCTGAACTTTTACAGCTTGTTTTCACTTTGAAATTCTCG 1033
|||||| ||||||| |||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1714 TTGATTGTAGTCTTCTTGTTCTCTGAATTTTTACAGCTTGTTTTCACTTTGAAACTCTCG 1655
Query 1034 GTTCTAGGTTTTGTTCCACGCACTCTCTTTGTCGTCATGTTCACATGATCTTGAACTTCA 1093
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1654 GTTCTAGGTTTTGCTCCACGCACTCTCTTTGTCGTCATGTTCACATGATCTTGAACTTCA 1595
Query 1094 GCTAGATCTACTTCTGTTGTTTCAAATGTTTCTTTCACTCTGTTCTTCTCACTGTCCTGT 1153
|||| |||||| ||||||||||||||||||||||||||| |||||||| || ||| |||
Sbjct 1594 GCTATATCTACCTCTGTTGTTTCAAATGTTTCTTTCACTGTGTTCTTCGCAGAGTCTTGT 1535
Query 1154 TTGATTCCAGCGGCATCAAGTTTGGACAGATCGATTGTAACACACTCTTTTTGATCCTCG 1213
|||||||||| | ||||| |||| || |||||||||||||| ||||||||||||||||
Sbjct 1534 TTGATTCCAGAATCTTCAAGCTTGGGCAAATCGATTGTAACACCCTCTTTTTGATCCTCG 1475
Query 1214 TGTTCGTGAGAGTTTGGTGAAGAAGAAGCCACGTCCACTGCTTTGCTTTTGGTCACAAAC 1273
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1474 TGTCCGTGAGAGTTTGGTGAAGAAGAAGCCACGTCCGTTGCTTTGCTTTTGGTCACAAAT 1415
Query 1274 GAATCAGCGAGTTCTTGCACACCGTATTCTGCGATTTCCAGATTGATTTCATCGGTTTTT 1333
||| ||||||||||||||| |||||| ||||| | ||| |||||||||||||||||||||
Sbjct 1414 GAAACAGCGAGTTCTTGCAAACCGTACTCTGCAAATTCTAGATTGATTTCATCGGTTTTT 1355
Query 1334 CTAATCTTGAACGGGTTGTTGTCCGGAATAAGTGAGGGATTGCTGGGTCGGG-TAACCAC 1392
|| |||||||||||||||||||| |||||||||||| |||||||||| | || |||||||
Sbjct 1354 CTTATCTTGAACGGGTTGTTGTCTGGAATAAGTGAGAGATTGCTGGG-CTGGATAACCAC 1296
Query 1393 TTGATCCCTGTTAGGCTGCGCAAGCAGTTTGTATAGATCT 1432
||||||||||||||||||| ||||||||||| |||||||
Sbjct 1295 CTGATCCCTGTTAGGCTGCGAAAGCAGTTTGTGTAGATCT 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53554884470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5