BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18120.1 Length=1835 Score E Sequences producing significant alignments: (Bits) Value Ahg920737 jgi|Araly1|920737|scaffold_102018.1 283 3e-75 > Ahg920737 jgi|Araly1|920737|scaffold_102018.1 Length=814 Score = 283 bits (153), Expect = 3e-75 Identities = 177/188 (94%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 1430 TTGTTACACTCTTTAAAAGCGAGTAAATTCGCGATTCAATTGCTAGCTCG-TTGGGTTGC 1488 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 345 TTGTTACACTCTTTAAAAGCGAGTAAATTCGCGATTCAATTGCTAGCACCATTGGGTTGC 404 Query 1489 TTACCAATATCGAGACAAGAATACAAGACAGGGCAACGAGTGTTACGAGCCACTCAACGA 1548 |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 405 TTACCAATATCGAGGCAAGAATACAAAACAGG-CAACGAGTGTTACGAGCCACTCAACGA 463 Query 1549 TTTAGTCAAACAACACAACGAGAAGATTGGTCCAATGTTGAACGACCTTGCTAAAACAAA 1608 |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| Sbjct 464 TTTAGTCAAACAACACAACGAGAAGATTGGTCCAATGTTGCACGACCTTGCAAAAAAAAA 523 Query 1609 --TCCCGG 1614 |||||| Sbjct 524 ACTCCCGG 531 Score = 189 bits (102), Expect = 6e-47 Identities = 122/131 (93%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 673 ATGACACTAAATCAGCAAGTCG-ATAAT-TTTAGAAGTATGAAATCAAATTGGATCGACG 730 |||||||||||||||||||| | || || ||||||||||| ||||||||||||| ||||| Sbjct 132 ATGACACTAAATCAGCAAGT-GAAT-ATATTTAGAAGTATAAAATCAAATTGGACCGACG 189 Query 731 ATTTCATTGGAAGGTCACTGTTTATGATTTACATTGGTACCGAAGATAAATTAAACTTTA 790 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 190 ATTTCATTGGAAGGTCACTGTTTATGATTTACATTGGTACCGAAGATTACTTAAACTTTA 249 Query 791 CCAAGAACAAA 801 | ||||||||| Sbjct 250 CTAAGAACAAA 260 Score = 182 bits (98), Expect = 1e-44 Identities = 121/132 (92%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 459 TCCATGATAAAGCTGAATTCATGGGCATTCCGGAAGAGATCCCACCAGTATTTAAAACAG 518 ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1 TCCATGATAAAGCTGAATTCATGGGCATTCCTAAAGAGATCCCACCAGTACTTAAAACAG 60 Query 519 CCGTTGATGTTTTACGTGGAGCCAGTTTTGGCG-TCGCCGATGCTTCTATTCTTGGCTAT 577 ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||| || Sbjct 61 GCGTTGATGTTTCACGTGGAGCCAGTTTTG-CGGTCGCCGATACTTCTATTCTTGGCAAT 119 Query 578 CCGGCAACATCC 589 ||| ||||||| Sbjct 120 TCGGAAACATCC 131 Score = 80.5 bits (43), Expect = 4e-14 Identities = 48/50 (96%), Gaps = 2/50 (4%) Strand=Plus/Plus Query 811 GCAAGCATTTGTCATTTCCGCTATTAATCAATTGAAG-TCCGACATCAAC 859 ||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 296 GCAAGCATTTGTCATTTCCGCTATTAATCAATTGAAGATC-GACATCAAC 344 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68905253205 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5