BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G18120.1

Length=1835
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920737 jgi|Araly1|920737|scaffold_102018.1                        283    3e-75


> Ahg920737 jgi|Araly1|920737|scaffold_102018.1
Length=814

 Score =  283 bits (153),  Expect = 3e-75
 Identities = 177/188 (94%), Gaps = 4/188 (2%)
 Strand=Plus/Plus

Query  1430  TTGTTACACTCTTTAAAAGCGAGTAAATTCGCGATTCAATTGCTAGCTCG-TTGGGTTGC  1488
             ||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||
Sbjct  345   TTGTTACACTCTTTAAAAGCGAGTAAATTCGCGATTCAATTGCTAGCACCATTGGGTTGC  404

Query  1489  TTACCAATATCGAGACAAGAATACAAGACAGGGCAACGAGTGTTACGAGCCACTCAACGA  1548
             |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  405   TTACCAATATCGAGGCAAGAATACAAAACAGG-CAACGAGTGTTACGAGCCACTCAACGA  463

Query  1549  TTTAGTCAAACAACACAACGAGAAGATTGGTCCAATGTTGAACGACCTTGCTAAAACAAA  1608
             |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||
Sbjct  464   TTTAGTCAAACAACACAACGAGAAGATTGGTCCAATGTTGCACGACCTTGCAAAAAAAAA  523

Query  1609  --TCCCGG  1614
               ||||||
Sbjct  524   ACTCCCGG  531


 Score =  189 bits (102),  Expect = 6e-47
 Identities = 122/131 (93%), Gaps = 4/131 (3%)
 Strand=Plus/Plus

Query  673  ATGACACTAAATCAGCAAGTCG-ATAAT-TTTAGAAGTATGAAATCAAATTGGATCGACG  730
            |||||||||||||||||||| | || || ||||||||||| ||||||||||||| |||||
Sbjct  132  ATGACACTAAATCAGCAAGT-GAAT-ATATTTAGAAGTATAAAATCAAATTGGACCGACG  189

Query  731  ATTTCATTGGAAGGTCACTGTTTATGATTTACATTGGTACCGAAGATAAATTAAACTTTA  790
            ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct  190  ATTTCATTGGAAGGTCACTGTTTATGATTTACATTGGTACCGAAGATTACTTAAACTTTA  249

Query  791  CCAAGAACAAA  801
            | |||||||||
Sbjct  250  CTAAGAACAAA  260


 Score =  182 bits (98),  Expect = 1e-44
 Identities = 121/132 (92%), Gaps = 2/132 (2%)
 Strand=Plus/Plus

Query  459  TCCATGATAAAGCTGAATTCATGGGCATTCCGGAAGAGATCCCACCAGTATTTAAAACAG  518
            |||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||
Sbjct  1    TCCATGATAAAGCTGAATTCATGGGCATTCCTAAAGAGATCCCACCAGTACTTAAAACAG  60

Query  519  CCGTTGATGTTTTACGTGGAGCCAGTTTTGGCG-TCGCCGATGCTTCTATTCTTGGCTAT  577
             ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||| ||
Sbjct  61   GCGTTGATGTTTCACGTGGAGCCAGTTTTG-CGGTCGCCGATACTTCTATTCTTGGCAAT  119

Query  578  CCGGCAACATCC  589
             ||| |||||||
Sbjct  120  TCGGAAACATCC  131


 Score = 80.5 bits (43),  Expect = 4e-14
 Identities = 48/50 (96%), Gaps = 2/50 (4%)
 Strand=Plus/Plus

Query  811  GCAAGCATTTGTCATTTCCGCTATTAATCAATTGAAG-TCCGACATCAAC  859
            ||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  296  GCAAGCATTTGTCATTTCCGCTATTAATCAATTGAAGATC-GACATCAAC  344



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 68905253205


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5