BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18140.1
Length=1931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920739 jgi|Araly1|920739|scaffold_102020.1 2793 0.0
> Ahg920739 jgi|Araly1|920739|scaffold_102020.1
Length=1786
Score = 2793 bits (1512), Expect = 0.0
Identities = 1692/1781 (95%), Gaps = 4/1781 (0%)
Strand=Plus/Plus
Query 32 TTCTATAAAG-AAATGGAAAATTTAGGGTTTCTAATAATTTCGACCTTTTTGCTTCTATT 90
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 8 TTCTATAAAGCAAATGGAGAATTTAGGGTTTCTAATAATTTCGACCTTTTTGCTTATATT 67
Query 91 TACAACTCTTCTCCCTTATTCTTCGGCTTCAACCACTCGTCGATTTCACTTTAATGTCGA 150
| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct 68 TGCAACTCTTCTCCCTTATCCTTCCGCTTCAACCACCCGTCGATTTCACTTTAATGTCGA 127
Query 151 ATGGAAGAAGGTAACTCGATTGTGCCACACCAAACAACTTCTAACGGTGAACGGACAATA 210
|||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 128 ATGGAAGAAGGTAACTCGATTGTGCCACACGAAACAGCTTTTAACGGTGAACGGACAATA 187
Query 211 TCCAGGACCGACCGTGGCAGTACACGAAGGTGACATCGTAGAAATCAAAGTGACTAACCG 270
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 188 TCCAGGGCCGACCGTGGCAGTACACGAAGGTGACACCGTAGAAATCAAAGTGACTAACCG 247
Query 271 GATTGCTCACAATACAACTATTCATTGGCATGGGTTAAGGCAATACCGGACCGGTTGGGC 330
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 248 GATTGCTCAAAATACAACTATTCATTGGCATGGGTTAAGGCAATACCGAACCGGTTGGGC 307
Query 331 TGATGGACCGGCTTACATAACGCAATGTCCGATAAGATCGAAACAATCATATACATATAG 390
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 308 TGATGGACCGGCTTACATAACACAATGTCCAATAAGATCAAAACAATCATATACATATAG 367
Query 391 ATTCAAAGTGGAGGATCAAAGAGGCACACTCCTTTGGCATGCTCATCACTCATGGCAACG 450
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 ATTCAAAGTGGAAGATCAAAGAGGCACACTCCTTTGGCATGCTCATCACTCATGGCAACG 427
Query 451 AGCCTCCGTCTACGGCGCTTTCATCATCTATCCGCGGCAGCCTTATCCCTTTTCCGGCAG 510
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AGCCTCCGTCTATGGCGCTTTCATCATCTATCCGCGGCAGCCTTATCCCTTTTCCGGCAG 487
Query 511 CCATATCCAATCCGAAATTCCCATTATACTTGGTGAATGGTGGAATGATGACGTGGACAA 570
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 488 TAATATCCAATCAGAAATCCCCATTATACTTGGTGAATGGTGGAATGATGACGTGGAC-A 546
Query 571 T-GTTGAGAAAGCGATGATGAAGACCGGAGCTGGGGCTAAAGTTTCCGACGCTTACACCC 629
| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 547 TGGTTGAGAAAGAGATGATGAAGACCGGAGCTGGGGCTAACGTTTCCGACGCTTACACCC 606
Query 630 TTAACGGGCTTCCCGGCCCACTTTATCCATGTTCTACCAAAGATACTTTCACGGCGACCG 689
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 607 TTAACGGGCTTCCCGGCCCACTTTATCCTTGTTCTACCAAAGATACTTTCACGGCGACCG 666
Query 690 TAGACGCCGGAAAAACCTACATCCTCCGCATAATCAATGCAGCTCTAAACAACGAGCTCT 749
|||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 667 TAGACGCCGGGAAAACCTACATCCTCCGTGTAATCAACGCAGCTCTAAACAACGAGCTCT 726
Query 750 TCGTCGCTGTAGCGAATCACACGCTAACTGTAGTCGAAGTCGACGCGGTTTACACCAAAC 809
|| | ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 727 TCTTGGCTGTAGCGAATCACACACTAACCGTAGTCGAGGTCGACGCGGTTTACACCAAAC 786
Query 810 CGGTTCATACCAAAGCAATCATGATCGCTCCCGGTCAAACCACCACCCTTCTTCTCCGCG 869
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 787 CGGTTCATACCAAAGCAATCATGATCGCTCCAGGTCAAACCACCACCTTTCTTCTCCGCG 846
Query 870 CCGACCAACTCTCCGGCGGTGAATTTCTCATCGCCGCAACTCCTTACGTCACTTCCGTCT 929
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 847 CCGACCAACTCTCCGGCGGCGAATTTATCATCGCCGCAACTCCTTACGTCACTTCCGTCT 906
Query 930 TTCCTTTCAACAACTCAACCACCGTAGGATTCATCCGTTACACCGGTAAAACCAAACCGG 989
| || |||||||||||||| || | |||||| |||| |||| ||| | || ||||||||
Sbjct 907 TCCCCTTCAACAACTCAACTGCCTTCGGATTCCTCCGATACAGCGGCAGAAGCAAACCGG 966
Query 990 AAAATTCCGTAAACACACGGCGGAGACGGCGATTAACGGCAATGTCGACAGTCGTAGCTC 1049
||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 967 AAAATTCCGAAAATACACGGCGGAGACGGCGATTAACGGCAATGTCGACAGTCGCAGCTC 1026
Query 1050 TCCCGAATATGCTGGATACGAAATTCGCGACGAAATTCTCCGATAGCATCAAAAGTCTGG 1109
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1027 TTCCGAATATGCTGGATACGAAATTCGCGACGAAATTCTCCGATAGCATCAAGAGTCTCG 1086
Query 1110 GATCAGCGAAGTATCCATGTAAAGTCCCGACGAAGATAGACAAGCGAGTGATCACCACGA 1169
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1087 GATCAGCGGAGTATCCATGTAAAGTCCCGACGAAGATCGACAAGCGAGTGATCACCACGA 1146
Query 1170 TAAGTCTCAATCTCCAGGATTGTCCGTTAAATCAGACCTGCGACGGTTACGCAGGGAAGA 1229
|||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||
Sbjct 1147 TAAGTCTCAATCTCCAGGATTGTCCGCCAAATCAGACCTGCGACGGCTACGCCGGGAAGA 1206
Query 1230 GATTCTTCGCATCAATGAACAACATCTCATTTGTCAGACCTCCGATATCGATCCTCGAAA 1289
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 1207 GATTCTTCGCATCAATGAACAACATCTCATTCGTCAGACCTCCGATGTCGATCCTCGAGA 1266
Query 1290 GCTACTATAAGAAACAGAGCAAAGGAGTTTTCTCACTCGATTTCCCAGAGAAACCACCGA 1349
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1267 GCTACTATAAGAAACAGAGTAAAGGAGTTTTCTCGCTCGATTTCCCAGAGAAACCACCGA 1326
Query 1350 ACAGATTCGATTTCACGGGAGTAGATCCGGTATCGGAAAACATGAACACAGAATTCGGTA 1409
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1327 ACAGATTCGATTTCACGGGAGTAGATCCGGTATCGGAAAACATGAACACCGAATTCGGGA 1386
Query 1410 CGAAGCTTTTCGAAGTCGAATTCGGATCGAGATTAGAGATCGTGTTTCAGGGAACGAGTT 1469
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1387 CGAAGCTATTCGAAGTCGAATTCGGATCGAGATTAGAGATCGTGTTTCAAGGAACGAGTT 1446
Query 1470 TCTTAAACATCGAGAATCATCCTTTACATGTACACGGACACAATTTCTTCGTAGTGGGAA 1529
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1447 TCTTAAACATTGAGAACCATCCGTTACATGTACACGGACACAATTTCTTCGTAGTGGGAA 1506
Query 1530 GAGGATTTGGGAATTTTGACCCGGAGAAGGATCCGAAAAGGTACAACTTGGTGGATCCGC 1589
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1507 GAGGATTTGGGAATTTTGACCCGGAGATGGATCCGAAAAGGTACAACTTGGTGGATCCGC 1566
Query 1590 CGGAGAGGAATACTTTTGCAGTGCCGACGGGAGGATGGGCGGCGATTAGGATAAATGCGG 1649
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 CGGAGAGGAACACCTTTGCGGTGCCGACGGGAGGATGGGCGGCGATTAGGATAAATGCGG 1626
Query 1650 ATAATCCAGGAGTTTGGTTTATTCACTGTCATCTAGAACAACATACTTCGTGGGGTTTAG 1709
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1627 ATAATCCAGGAGTTTGGTTTATTCACTGTCATCTAGAACAACATACTTCTTGGGGATTAG 1686
Query 1710 CAATGGGGTTTATCGTCAAAGATGGACCTCTTCCTTCACAAACTCTGCTTCCTCCTCCTC 1769
| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1687 CTATGGGGTTTATCGTTAAAGATGGACCTCTTCCTTCACAAACTCTGCTTCGTCCTCCTC 1746
Query 1770 ATGATCTTCCTCAGTGTTAAAAAATGTCTTCTATTATTATT 1810
||||||||||||||||||||||| ||| || ||||||||||
Sbjct 1747 ATGATCTTCCTCAGTGTTAAAAA-TGTGTTTTATTATTATT 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72561916725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5