BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18150.2
Length=2100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911627 jgi|Araly1|911627|Al_scaffold_0001_1881 2699 0.0
Ahg476507 jgi|Araly1|476507|fgenesh2_kg.2__1637__AT1G73670.1 1406 0.0
> Ahg911627 jgi|Araly1|911627|Al_scaffold_0001_1881
Length=1740
Score = 2699 bits (1461), Expect = 0.0
Identities = 1681/1779 (94%), Gaps = 48/1779 (3%)
Strand=Plus/Plus
Query 74 ATGGGTGGTGGTGGGAATCTCGTCGACGGTGTTCGTCGATGGCTTTTTCAGCGACcttct 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTGGTGGTGGGAATCTCGTCGACGGTGTTCGTCGATGGCTTTTTCAGCGA------ 54
Query 134 tcttcttcttcttcttcttcttcCAACAATAATAATAATAATCACGAACAACCCATTTTC 193
| |||||||||||| | | |||||||||||| || |||||||| ||
Sbjct 55 -------C--CTTCTTCTTCTT-C--C------AATAATAATCACCAAGAACCCATTCTC 96
Query 194 AAttcttcttctttctcttcttcCTCTAACCCCAATCATTCCGCTAACTCTGGAGAGCTT 253
||||||||||| || | |||||| ||||| | | ||| || ||||||||||||
Sbjct 97 AATTCTTCTTC-TT-T-TTCTTCTTCTAA---C---C---CCGGTACCTCTGGAGAGCTC 144
Query 254 ATTATTGA-AGAAGATCTCGATTTCTCTGGTCTAACGCTTATTAACGTTCCTAAACGTAA 312
|||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 145 ATTATT-ATTGAAGATCTCGATTTCTCTGGTCTAACGCTTATTAAAGTTCCTAAACGTAA 203
Query 313 TCATTTACCTATGGATCCTCACAAGAA-GG-GT----GAAACTGAATTCTTCACGGAGTA 366
|| ||||||||||||||||||||||| || || ||||||||||||||||| |||||
Sbjct 204 CCACTTACCTATGGATCCTCACAAGAAGGGTGTGCAGGAAACTGAATTCTTCACCGAGTA 263
Query 367 TGGAGAAGCTAACAGGTATCAGATTCAAGAGGTTGTTGGCAAAGGAAGTTATGGTGTTGT 426
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 264 TGGAGAAGCTAACAGGTATCAGATTCAAGAGGTTGTTGGGAAAGGAAGTTATGGTGTTGT 323
Query 427 GGCTTCTGCTGTTGACT-CACACACTGGAGAGAGAGTTGCGATCAAGAAGATCAACGATG 485
|||||||||||| || | ||||||||||||| |||||||| |||||||||||||||||||
Sbjct 324 GGCTTCTGCTGTAGA-TACACACACTGGAGAAAGAGTTGCTATCAAGAAGATCAACGATG 382
Query 486 TGTTTGAGCATGTCTCCGATGCTACTAGGATTCTCAGAGAGATCAAATTGCTTCGGTTGC 545
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 TGTTTGAGCATGTCTCTGATGCTACTAGGATTCTCAGAGAGATCAAATTGCTTCGGTTGC 442
Query 546 TTCGTCATCCTGATGTTGTGGAGATTAAACACATCATG-TTACCTCCTTCTCGCAGAGAA 604
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 443 TTCGTCATCCTGATGTTGTGGAGATTAAACACATCATGCTT-CCTCCTTCTCGCAGAGAA 501
Query 605 TTCCGCGATATTTATGTTGTCTTTGAGTTGATGGAATCTGATCTTCATCAAGTGATCAAG 664
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 502 TTCCGGGATATTTATGTTGTCTTTGAGTTGATGGAATCTGATCTTCATCAAGTCATCAAG 561
Query 665 GCGAATGATGATTTGACTCCTGAGCATTATCAGTTTTTCTTGTACCAGCTTCTTCGTGGT 724
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 GCCAACGATGATTTAACTCCTGAGCATTATCAGTTTTTCTTGTACCAGCTTCTTCGTGGT 621
Query 725 CTGAAATATGTTCACGCAGCTAATGTGTTTCATCGGGATTTGAAACCGAAGAACATTCTA 784
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 622 CTCAAATATGTTCACGCAGCTAATGTGTTTCATCGAGATTTGAAACCAAAGAACATTCTA 681
Query 785 GCTAATGCTGATTGCAAATTGAAGATCTGTGATTTTGGGCTGGCTCGCGTTTCTTTTAAC 844
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 GCTAATGCTGATTGCAAATTGAAGATCTGTGATTTTGGGCTGGCTCGCGTTTCTTTTAAT 741
Query 845 GATGCCCCAACCGCTATATTTTGGACTGATTATGTAGCTACTCGGTGGTATCGTGCCCCT 904
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 742 GATGCCCCAACCGCTATATTTTGGACTGATTATGTAGCTACTCGATGGTATCGTGCCCCT 801
Query 905 GAACTCTGTGGATCGTTTTTCTCCAAATATACCCCTGCGATTGATATCTGGAGTGTCGGT 964
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 802 GAACTCTGTGGATCGTTTTTCTCCAAATATACCCCTGCCATTGATATCTGGAGTGTCGGT 861
Query 965 TGCATTTTTGCGGAAATGCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCAC 1024
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 TGCATATTTGCGGAAATGCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCAC 921
Query 1025 CAATTGGATCTAATGACTGACTTTCTTGGTACTCCACCTCCTGAGTCAATATCAAGGATT 1084
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 922 CAATTGGATCTAATGACTGACTTTCTTGGTACTCCACCTCCTGAGTCGATATCAAGGATT 981
Query 1085 AGAAATGAAAAGGCGAGGAGATATCTTAGCAGCATGAGGAAAAAACAACCAGTCCCTTTC 1144
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 AGAAATGAAAAGGCAAGGAGATATCTTAGCAGCATGAGGAAAAAACAACCAGTCCCTTTC 1041
Query 1145 TCTCATAAATTCCCTAAAGCTGATCCTTTGGCTCTCCGCCTTCTGGAACGCCTGCTTGCC 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 TCTCATAAATTCCCTAAAGCTGATCCTTTGGCTCTCCGCCTTCTGGAACGCCTGCTTGCC 1101
Query 1205 TTTGATCCGAAAGATCGTGCATCAGCTGAAGATGCACTAGCTGATCCATATTTCAGTGGT 1264
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1102 TTTGATCCGAAAGACCGTGCATCAGCTGAAGATGCACTAGCTGATCCATACTTCAGTGGT 1161
Query 1265 TTGTCAAATTCAGAGCGTGAACCAACAACACAGCCAATTTCAAAGCTTGAATTTGACTTT 1324
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1162 TTGTCAAATTCAGAGCGTGAACCAACATCACAGCCAATTTCAAAGCTTGAATTTGACTTT 1221
Query 1325 GAGAGAAAGAAGTTAGTTAAAGATGATGTCAGAGAATTAATTTACCGAGAGATATTGGAA 1384
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 GAGAGAAAGAAGTTAGTAAAAGATGATGTCAGAGAATTAATTTACCGAGAGATATTGGAA 1281
Query 1385 TATCATCCTCAGATGTTGGAGGAATACCTTCGTGGTGGTGATCAGCTTAGCTTTATGTAC 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1282 TATCATCCTCAGATGTTGGAGGAATACCTTCGTGGTGGTGATCAGCTTAGCTTCATGTAC 1341
Query 1445 CCAAGTGGGGTAGACCGATTTAAAAGGCAATTTGCTCATCTTGAAGAAAATCAAGGTAAA 1504
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1342 CCCAGTGGGGTAGACCGGTTTAAAAGGCAATTTGCTCATCTTGAAGAAAATCAAGGTCAA 1401
Query 1505 CCAGGAGCAGCAGGAGGAGGAAGAAGTACTGCACTTCACAGACATCATGCTTCCTTGCCA 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 CCAGGAGCAGCAGGAGGAGGAAGAAGTACTGCACTTCACAGACATCATGCTTCCTTGCCA 1461
Query 1565 AGAGAGAGAGTTCCTGCTCCAAATGGTGAAACTGCAGAAGAAAGCAGTGATGTTGAGAGA 1624
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1462 AGGGAGAGAGTTCCTGCTCCGAATGGTGAAACTGCAGAAGAAAGCAGTGATGTTGAGAGA 1521
Query 1625 AGAGCAGCAGCTGCTGTGGCTTCAACCTTGGAATCCGAGGAAGCAGACAATGGAGGAGGT 1684
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1522 AGAGCAGCAGCTGCTGTGGCTTCAACCTTGGAATCTGAGGAAGCAGACAATGGAGGAGGT 1581
Query 1685 TACAGTGCTCGTAACCTCATGAAGAGTGCAAGCATCAGCGGTTCTAAATGCATTGGTGTC 1744
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1582 TACAGTGCTCGTAACCTCATGAAGAGCGCAAGCATCAGCGGTTCTAAATGCATCGGTGTC 1641
Query 1745 CAATCTAAAACTGACAAAGAGGATACCATAGCTGAGGAAGAAGATAATGAAACAGTTGCA 1804
||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1642 CAATCTAAAACCGACAAAGAGGACACCATAGCTGAGGAAGAAGATGCTGAAACAGTTGCA 1701
Query 1805 GAGCTTACTGATAAAGTTGCTTCTCTTCACAATTCTTAA 1843
||||||||||||| |||||||||||| ||||||||||||
Sbjct 1702 GAGCTTACTGATAGAGTTGCTTCTCTCCACAATTCTTAA 1740
> Ahg476507 jgi|Araly1|476507|fgenesh2_kg.2__1637__AT1G73670.1
Length=2149
Score = 1406 bits (761), Expect = 0.0
Identities = 1257/1486 (85%), Gaps = 75/1486 (5%)
Strand=Plus/Plus
Query 348 CTGAATTCTTCACGGAGTATGGAGAAGCTAACAGGTATCAGATTCAAGAGGTTGTTGGCA 407
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 393 CTGAATTCTTCACGGAGTATGGAGAAGCAAATAGGTATCAGATTCAAGAAGTTGTTGGCA 452
Query 408 AAGGAAGTTATGGTGTTG-TGGCTTCTGCTGTTGACT-CACACACTGGAGAGAGAGTTGC 465
||||||| ||||| |||| ||| ||||||| | || | | ||||||||||| ||||||||
Sbjct 453 AAGGAAGCTATGGAGTTGTTGG-TTCTGCTATAGA-TACTCACACTGGAGAAAGAGTTGC 510
Query 466 GATCAAGAAGATCAACGATGTGTTT-GAGCATGTCTCCGATGCTACTAGGATTCTCAGAG 524
|||||||||||||| ||||| ||| || ||| |||| ||||| ||||||||||| || |
Sbjct 511 TATCAAGAAGATCAATGATGT-TTTCGATCATATCTCTGATGCAACTAGGATTCTTAGGG 569
Query 525 AGATCAAATTGCTT-CGGTTGCTTCGTCATCCTGATGTTGTGGAGATTAAACACATCATG 583
|||| || ||| || || ||||||| |||||| ||||||||||||||||| || ||||||
Sbjct 570 AGATTAAGTTG-TTGCGTTTGCTTCTTCATCCAGATGTTGTGGAGATTAAGCATATCATG 628
Query 584 -TTACCTCCTTCTCGCAGAGAATTCCGCGATATTTATGTTGTCTTTGAGTTGATGGAATC 642
|| ||||||||||| ||||| || || ||| |||||||||| |||||||||||||||||
Sbjct 629 CTT-CCTCCTTCTCGAAGAGAGTTTCGTGATGTTTATGTTGTGTTTGAGTTGATGGAATC 687
Query 643 TGATCTTCATCAAGTGATCAAGGCGAATGATGATTTGACTCCTGAGCATTATCAGTTTTT 702
|||||||||||| ||||| || || ||||||||||| |||||||||||| ||||||||||
Sbjct 688 TGATCTTCATCAGGTGATTAAAGCTAATGATGATTTAACTCCTGAGCATCATCAGTTTTT 747
Query 703 CTTGTACCAGCTTCTTCGTGGTCTGAAATATGTTCACGCAGCTAATGTGTTTCATCGGGA 762
|||||| |||||||| |||||| |||| |||||||| || || |||||||||||||||||
Sbjct 748 CTTGTATCAGCTTCTCCGTGGTTTGAAGTATGTTCATGCTGCGAATGTGTTTCATCGGGA 807
Query 763 TTTGAAACCGAAGAACATTCTAGCTAATGCTGATTGCAAATTGAAGATCTGTGATTTTGG 822
||||||||| ||||||||||| || ||||||||||||||||||||||| ||||| |||||
Sbjct 808 TTTGAAACCAAAGAACATTCTTGCCAATGCTGATTGCAAATTGAAGATTTGTGACTTTGG 867
Query 823 GCTGGCTCGCGTTTCTTTTAACGATGCCCCAACCGCTATATTTTGGACTGATTATGTAGC 882
|| ||||| || |||||||| |||||||| |||||||| ||||||||||| ||||| ||
Sbjct 868 TCTAGCTCGTGTGTCTTTTAATGATGCCCCTACCGCTATTTTTTGGACTGACTATGTTGC 927
Query 883 TACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAATATACCCCTGC 942
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 928 TACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCCTTTTTCTCAAAATATACCCCTGC 987
Query 943 GATTGATATCTGGAGTGTCGGTTGCATTTTTGCGGAAATGCTTTT-GGGTAAGCCTTTGT 1001
||||||||| ||||| ||||||||||| ||||| ||||||||||| ||| ||||| || |
Sbjct 988 GATTGATATTTGGAGCGTCGGTTGCATATTTGCTGAAATGCTTTTAGGG-AAGCCGTTAT 1046
Query 1002 TTCCCGGGAAAAACGTTGTGCACCAATTGGATCTAATGACTGACTTTCTTGGTACTCCAC 1061
|||| || ||||||||||| |||||||||||| | ||||| || |||||||| |||||||
Sbjct 1047 TTCCTGGCAAAAACGTTGTTCACCAATTGGATATTATGACCGATTTTCTTGGCACTCCAC 1106
Query 1062 CTCCTGA-GTCAATATCAAGGATTAGAAATGAAAAGGCGAGGAGATATCTTAGCAGCATG 1120
| ||||| | ||||||||| ||| |||||||| |||||||||||||||||| ||| ||||
Sbjct 1107 CACCTGAAG-CAATATCAAAGATCAGAAATGATAAGGCGAGGAGATATCTTGGCAACATG 1165
Query 1121 AGGAAAAAACAACCAGTCCCTTTCTCTCATAAATTCCCTAAAGCTGATCCTT-TGGCTCT 1179
|| |||||||| |||||||| |||||| | |||||||||||||| ||||||| || | ||
Sbjct 1166 AGAAAAAAACAGCCAGTCCCATTCTCTAAAAAATTCCCTAAAGCAGATCCTTCTGCC-CT 1224
Query 1180 CCGCCT-TCTGGAACGCCTGCTTGCCTTTGATCCGAAAGATCGTGCATCAGCTGAAGATG 1238
|||||| | ||||||||||| ||||||||||||| ||||||||| |||| || ||||| |
Sbjct 1225 CCGCCTGT-TGGAACGCCTGATTGCCTTTGATCCAAAAGATCGTCCATCTGCCGAAGAAG 1283
Query 1239 CACTAGCTGATCCATATTTCAGTGGTTTGTCAAATTCAGAGCGTGAACCAACAACACAGC 1298
|| || |||||||||| |||| |||| |||||| | |||||| |||||| | |||||||
Sbjct 1284 CATTAACTGATCCATACTTCAATGGTCTGTCAAGTAAAGAGCGGGAACCATCGACACAGC 1343
Query 1299 CAATTTCAAAGCTTGAATTTGACTTTGAGAGAAAGAAGTTAGTTAAA-GATGATGTCAGA 1357
| |||||||||||||||||||| |||||||||||||| || | ||| |||||| |||||
Sbjct 1344 CGATTTCAAAGCTTGAATTTGAGTTTGAGAGAAAGAAATT-GACAAAAGATGATATCAGA 1402
Query 1358 GAATTAATTTACCGAGAGATATTGGAATATCATCCTCAGATGTTGGAGGAATACCTTCGT 1417
|| |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct 1403 GAGTTAATTTACCGAGAGATATTAGAGTATCATCCTCAGATGCTGGAGGAATACCTTCGT 1462
Query 1418 GGTGGTGATCAGCTTAGCTTTATGTACCCAAGTGGGGTAGACCGATTTAAAAGGCAATTT 1477
||||| ||||||| ||||| |||||||| ||||||||||| |||||| ||||| |||
Sbjct 1463 GGTGGCAATCAGCTCAGCTTCATGTACCCCAGTGGGGTAGATCGATTTCGGAGGCAGTTT 1522
Query 1478 GCTCATCTTGAAGAAAATCAAGGTAAACCAGGAGCAGCAGGAGGAGGAAGAAGTACTGCA 1537
|||||||| ||||||||||||||| | ||||| | | | | ||| | || |||
Sbjct 1523 GCTCATCTCGAAGAAAATCAAGGT---CTAGGAG--G-A--A--A--AAGTA--AC-GCA 1567
Query 1538 CTTCACAGACATCATGCTTCCTTGCCAAGAGAGAGAGTTCCTGC-TCCAA-ATGGTGAAA 1595
||||| ||||| ||||||||||| ||||||||| |||||||||| ||||| | |||||
Sbjct 1568 CTTCAGAGACAGCATGCTTCCTTACCAAGAGAGCGAGTTCCTGCATCCAAGAA--TGAAA 1625
Query 1596 CTG-CAGAAGAAAGCAGTGATG-T-T-GAGAGAAGAGCAGCAGCTGCTGTGGCTTCAACC 1651
| | | ||||||||||| ||| | | ||||||||| || ||| ||||| |||||||||
Sbjct 1626 CAGTC-GAAGAAAGCAGCAATGATATCGAGAGAAGAACAATAGCAGCTGTAGCTTCAACC 1684
Query 1652 TTGGA-A-TCC----G----A------G--GAAG---CAGACAATGGAGGAGGT------ 1684
|| || | ||| | | | |||| ||||||||||||||||
Sbjct 1685 TTAGACAGTCCCAAAGCTTCACAACAAGCTGAAGGTACAGACAATGGAGGAGGAGGAGGG 1744
Query 1685 TACAGTGCTCGTAACCTCATGAAGAG-TGCAAGCATCAGCGGTTCTAAATGCATTGGTGT 1743
|| ||||| |||||||| ||||| || | | |||||||| |||||||||||||| |||||
Sbjct 1745 TATAGTGCGCGTAACCTGATGAAAAGCT-CTAGCATCAGTGGTTCTAAATGCATAGGTGT 1803
Query 1744 CCAATCTAAAACTGACAAAGAGGATACCATAGCT-GAGGAAGAAGA 1788
|||||||||||| ||| |||||| |||||| | |||||| ||||
Sbjct 1804 ACAATCTAAAACTAACATTGAGGATCCCATAG-TAGAGGAACAAGA 1848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78999168130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5