BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18160.1
Length=3516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472032 jgi|Araly1|472032|fgenesh2_kg.1__1986__AT1G18160.1 5397 0.0
Ahg476506 jgi|Araly1|476506|fgenesh2_kg.2__1636__AT1G73660.1 1245 0.0
> Ahg472032 jgi|Araly1|472032|fgenesh2_kg.1__1986__AT1G18160.1
Length=3408
Score = 5397 bits (2922), Expect = 0.0
Identities = 3239/3388 (96%), Gaps = 38/3388 (1%)
Strand=Plus/Plus
Query 83 TTTTCTTGAAATCGAAATCTGATCTCCATTGAGAGTCTTGCTACTTGATTTGGATTCCGA 142
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 29 TTTTCTTGAAATCGAAATCTGATCTCCATTGAGAGTCTTGCTGCTTGATTTTGATTCCGA 88
Query 143 TTTAAGGTTTTCTCGAGAATTCTTTTGCTGCAGTTATTAGATTTTGACGAGCCGTTGATC 202
|||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||
Sbjct 89 -TTAAGGTTTTCTCGAGAA-TCTTTTGCTGCAGTTACTAGGTTTTGACGAGCCGTTGATC 146
Query 203 TGGACGGAGTTCCAGATCTCCGGGTCGTGGTACCAAGGAATTAGGGTTTTAGCACAAAGT 262
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 147 TGGACGGAGTTCCAGATCTCCGGGTCGTGGTTGCAAGGAATTAGGGTTTTAGCACAAAGT 206
Query 263 TCTCGTTTTTCTGTGTATTCGAGGGATGAAGGAGTTTTCGGGTCGATGTTCGCTGCTCTA 322
||| | ||||||||| |||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 207 TCTTG-TTTTCTGTGGATTCGAGGGATGGACAAGTTTCCGGGTCGATGTTCGCTGCTCTA 265
Query 323 ACATTTGGAGTATGAAGATGAACATGAAGAAATTTCTCAAAAAGCTTCGTATCACGCCCA 382
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 266 ACATTTGGAGTATGAAGATGAACATGAAGAAATTTCTTAAAAAGCTTCGTATCACGCCCA 325
Query 383 ATCAACGAGACGATGGTGAAGGTTCAGTCTCTAACAGAAGCAATAAGTCTAGTGATGCAG 442
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 326 ATCAACGAGACGATGGTGAAGGGTCAGTCTCAAACAGAAGCAATAAGTCTAGTGATGCAG 385
Query 443 AACCATCTCCTTCTGATTCATTGAGGTCTCAAGATAACTCTGAATTCAAACCCTTTTTGG 502
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 386 AACCATCTCCTTCAGATTCATTGAGGTCTCAAGATAACACTGAATTCAAACCCTTTTCGG 445
Query 503 GTTTATCAAATTGGTTAAGCTCTGTTACTCACAGGAAAAGCCCTTCTTCTTCCAATGCCA 562
|||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 446 GTTTATCAAATTGGTTCAGCTCTGTTGCTCACAGAAAAAGCCCTTCTTCTTCCAATGCCA 505
Query 563 CCAATAGCAAAGAGGATGACACTACCATGGAACATGGTGGTCCCGTTGGGTCGGAATCT- 621
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 506 CCAATAGCAAAGAGGATGAAACTACCATGGAACATGGTGGTCCCGTTGGGTCGGAATCTG 565
Query 622 -G-GGATGCAGGGTTTGGGTTCTAGTAGTAATTCCAAGGATCCAGAAGTTGAAGAAGAAT 679
| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 566 GGAGGATGCAGGGTTTGGGTTC---TAGTAATTCCAAGGATCCAGAAGTTGAGGAAGAAT 622
Query 680 ATCAGATACAGTTGGCTCTAGAGTTAAGTGCTAGGGAGGATCCTGAAGCTGCTCAGATTG 739
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 623 ATCAGATACAGTTGGCTCTGGAGCTAAGTGCTAGGGAGGATCCTGAAGCTGCTCAGATTG 682
Query 740 AGGCTATGAAGCAGTTCAGCTTAGGTTCTCGTCCTTCTGCTCCCGAGAATACTCCAGCTG 799
||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 683 AGGCTATGAAGCAGTTCAGTTTAGGTTCTCGTCCTTCTGCTCCCGAGAATTCTCCTGCTG 742
Query 800 AACTCATGGCATATAGATATTGGAATTATAACTGTCTTGGCTATGATGACAAGATTGTGG 859
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 743 AACTCATGGCATATAGATACTGGAATTATAACTGTCTTGGCTATGATGACAAGATTGTGG 802
Query 860 ATGGTTTCTATGACCTGTGTGGAGTAATGAATGAATCTTCCTTAAAAAGAATACCTCCCT 919
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 803 ATGGTTTCTATGATCTGTGTGGAGTAATGAATGAATCTTCCTTAGAAAGAATACCTCCCT 862
Query 920 TAGTTGATCTTCAGGGGACACTTGTGTCAGATGGTGTAACTTGGGATGCTGTTCTAGTGA 979
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 863 TAGTTGATCTTCAGGGGACACTTATGTCAGATGGTGTAACTTGGGATGCTGTTCTAGTGA 922
Query 980 ACAGCAGCAAAGATTCTAATCTGTTGAGACTTGAACAAATGGCTCTTGATATTGCAGCAA 1039
|||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 ACAGAAGCCAAGATTCGAATCTGTTGAGACTTGAACAAATGGCTCTTGATATTGCAGCAA 982
Query 1040 AATCAAAGTCAGCGTCTTCTTCAGGGTTTGTGAACAGTGAATTGGTAAGGCAACTGGCAG 1099
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 983 AATCAAAGTCAGCGTCTTCTTCAGGGTTTGTGAACAGTGAATTGGTACGGAAACTGGCAG 1042
Query 1100 TTTTAGTTGCTGATTACATGGGTGGACCAGTTTTGGATCCAGATAGCACGTTAAGAGCTT 1159
|||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1043 TTTTGGTTGCAGATTACATGGGTGGACCAGTTGTGGATCCAGATAGCACGTTAAGAGCTT 1102
Query 1160 GGTGGAGTCTGAGCTACAGCTTGAAAGCAACCCTCCGTAGCATGGTTCTGCCCCTGGGTT 1219
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1103 GGTGGAGTCTGAGCTACAGCTTGAAAGCAACCCTCCATAGCATGGTTTTGCCCCTGGGTT 1162
Query 1220 CTCTAACTATTGGATTGGCTCGTCATCGTGCCTTGTTATTCAAAGTTTTGTGTGATAGTG 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 CTCTAACTATTGGATTGGCTCGTCATCGTGCCTTGTTATTCAAAGTTTTGTGTGATAGTG 1222
Query 1280 TCGGCGTTCCTTGTCGAATAGTCAAAGGACAGCAATATACCGGTTCAGATGATGTGGCAA 1339
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1223 TCGGTGTTCCTTGTCGAATAGTCAAAGGACAGCAATATACCGGTTCCGATGATGTGGCAA 1282
Query 1340 TGAACTCCATTAAGACTGATGATGGCAGGGAGTACATTGTTGATCTCATGGGAGATCCAG 1399
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1283 TGAACTCCATTAAGACTGATGATGGCAGGGAGTACATTGTTGATCTTATGGGAGATCCAG 1342
Query 1400 GCACGCTTATCCCCGCTGATGCAGCTGGACTACAAATGGACTTTGATGATTCTGTCTACT 1459
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1343 GCACGCTTATCCCCGCTGATGCAGCTGGACTACAAATGGACTATGATGATTCTGTCTA-T 1401
Query 1460 -CTGCCAGTCCCAGAGATGTTGATTCATCTCATGTAGCTTCTTCCAGCAGTGGGGTCGAG 1518
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1402 ACTGCCAGTCCCAGAGATGCTGATTCATCTCATGTAGCTTCTTCCAGCAGTGGGGTGGAG 1461
Query 1519 AGCTCAATTGAAGAACACACAGAATCTTGGTCAGCGGAACATCGTTCTAGGACCAAGGGT 1578
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1462 AGCTCAATTGAAGAACACACAGAATCTTGGTCAGCGGAACATCGTTCTAAGACCAAGGGT 1521
Query 1579 TCCCGGGAGGAAAACCAATCTGCAGGTGGAGGGGATCTCATGATTC--C-AAATA--TT- 1632
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1522 TCCCGGGAGGAAAACCAATCTGCAGGTGGAGGGGATCTCATGATTCGTCGAAATATTTTC 1581
Query 1633 AGGGAAGCTGTGGGAAGTCAAAAGGCTCCTGTTCAACATCTTTCCAGCAAGCCTACTCAT 1692
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1582 AGGGAAGTTGTGGGAAGTCAAAAGGCTCCTGTTCAACATCTTTCCAGCAAGCCTACTTAT 1641
Query 1693 TCTTTCACTCATGCCAGATCACCTTCGTGGACTGAAGGTGTTAGCTCTCCAGCTGGACGC 1752
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1642 TCTCTCACTCATGCCAGATCACCTTCTTGGACTGAAGGTGTTAGCTCTCCAGCTGGACGC 1701
Query 1753 AGGATGAAAGTCAAAGATGTTTCACAATATATGATTGATGCTGCCAAAGAGAATCCACAA 1812
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1702 AGGATGAAAGTCAAAGATGTATCACAATATATGATCGATGCTGCCAAAGAGAATCCACAA 1761
Query 1813 CTAGCTCAGAAGCTTCATGATGTGTTACTTGAAAGTGGAGTTGTAGCTCCTCGAAATTTA 1872
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1762 TTAGCTCAGAAGCTTCATGATGTGTTGCTTGAAAGTGGAGTTGTAGCTCCTCGGAATTTA 1821
Query 1873 TTTTCGGAAGTCTATTCAGAGTCAATGGAGGCAACAGGTGAAATCAAATCTGTGGCTGAA 1932
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1822 TTTTCGGAAGTCTATTCAGAGTCAATAGAGGCAACAGGTGAAATCAAATCTGTGGCTGAA 1881
Query 1933 TCCAATGATGAGAAAGGGAAAGATTTTGGAACAATCCAGCAAGGAAGAAACCAGAGCAAC 1992
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1882 TCCAATGATGAGAAAGGGAAAGATTTTGGAACAATTCAGCAAGGAAGAAACCAGAGCAAT 1941
Query 1993 CTTGGCCCTGTGAGGTTTTTGCCTCCTCTTCCAAGACCGCAATCTAAAGCAATTACCCAT 2052
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1942 CTTGGCCCTGTGAGGTTTTTGCCTCCTCTTCCAAGACCGCAATCTAAAGCAAATACCCAT 2001
Query 2053 GACCTACGTGAACATTCAGGATCTGGACTCGGTCATTTGTCTGAACATTGCAATATTGAT 2112
||||| ||| ||||||||||| ||||||||||||||||||| | |||||||||||||||
Sbjct 2002 GACCTGCGTCAACATTCAGGACCTGGACTCGGTCATTTGTCCCATCATTGCAATATTGAT 2061
Query 2113 GGTCACTCTGATTCCTCACATTCTGAAACATCTACTGACTATCCCAGAAATGTTCCTGTT 2172
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2062 GGTCAGTCTGATTCGTCACATTCTGAAACATCTACTGACTATCCCAGAAATGTTCCTGTT 2121
Query 2173 GCCGTAGCTGCAGCGGCTGTTGTTGCGTCTTCCATGGTTGTTGCTGCCGCCAAGTCAGCA 2232
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2122 GCCGTAGCTGCAGCGGCTGTTGTTGCATCTTCCATGGTTGTTGCTGCCGCCAAGTCAGCA 2181
Query 2233 AACTCGGATTCCTCCACTTTAGAACTTTCTGCTGCAGCTGCTGCTGCAGTTATGGCGACA 2292
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 2182 AACTCGGATTCCTCCACTTTAGAACTTTCTGCCGCAGCTGCTGCTGCAGTTGTGGCGACA 2241
Query 2293 GCTGCAGCAGTGAGCAGGCAGTTTGAACTAGATTCACTTAGCAACGGGGATGCTGGTTCT 2352
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2242 GCTGCAGCAGTGAGCAGGCAGCTTGAACTAGATTCACTTAGCAACGGGGATGCTGGTTCT 2301
Query 2353 GGTGGGCTTCATGGGGTAGATTCAGGAGGAGAACGAATATCCGACAGATCTATTGGCAAT 2412
||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||||||
Sbjct 2302 GGTGGGCTTCACGGGGTAGATTCAGGAGGAGAGCGAATATCTGACAGATCTACTGGCAAT 2361
Query 2413 GAAAGTTCAAAATCTGATGCTGCAATTGATGATGTAGCTGAATGCGAGATTTTGTGGGAG 2472
|||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||
Sbjct 2362 GAAAGTTCAAAATCTGATCCTGCAAATGATGATGTGGCTGAATGCGAGATTTTGTGGGAG 2421
Query 2473 GAAATTACTGTGGCTGAGCGTATCGGACTGGGATCATACGGAGAGGTATATAGGGGAGAT 2532
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2422 GAAGTTACTGTGGCTGAGCGTATCGGACTGGGATCATACGGAGAGGTTTATAGGGGAGAT 2481
Query 2533 TGGCATGGAACTGCAGTGGCTGTCAAGAAGTTCATTGACCAAGATATTACTGGAGAGGCA 2592
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2482 TGGCATGGAACTGCAGTGGCTGTCAAGAAGTTCATTGACCAAGATATTACGGGAGAGGCA 2541
Query 2593 CTGGAGGAATTCAGAAGTGAGGTCCGGATGATGAGAAGGCTCAGACACCCTAATATTGTT 2652
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 2542 CTGGAGGAATTCAGAAGTGAGGTCCGGATGATGAGAAGGCTCAGGCACCCTAACATTGTT 2601
Query 2653 CTCTTCATGGGAGCTGTAACCCGCCCACCAAATCTCTCAATTGTTACAGAATTTCTTCCT 2712
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2602 CTCTTCATGGGAGCTGTAACTCGCCCACCAAATCTCTCAATTGTTACAGAATTTCTTCCT 2661
Query 2713 CGAGGTAGCTTGTATAGGTTAATTCACAGGCCTAATAACCAATTAGATGAGCGAAAGCGT 2772
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 2662 AGAGGTAGCTTGTATAGGTTAATCCACAGGCCTAATAACCAATTAGATGACCGAAAGCGT 2721
Query 2773 CTGAGGATGGCTCTTGATGCTGCTCGTGGAATGAATTATTTACACAGCTGTAATCCGGTA 2832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2722 CTGAGGATGGCTCTTGATGCTGCTCGTGGAATGAATTATTTACACAGCTGTAATCCGGTA 2781
Query 2833 ATTGTCCATCGTGATCTTAAATCTCCAAACCTTCTAGTTGACAAAAATTGGGTTGTCAAG 2892
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2782 ATTGTCCATCGTGATCTTAAATCTCCAAACCTTCTAGTTGACAAAAACTGGGTTGTCAAG 2841
Query 2893 GTGTGCGATTTTGGGTTGTCTAGAATGAAAGTAAGCACATACCTCTCTTCAAAGTCAACA 2952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2842 GTGTGCGATTTTGGGTTGTCTAGAATGAAAGTAAGCACATACCTCTCTTCAAAGTCAACA 2901
Query 2953 GCAGGCACGGCTGAATGGATGGCTCCAGAAGTGCTTAGAAACGAACCCGCAGATGAGAAG 3012
||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 2902 GCAGGCACGGCCGAATGGATGGCTCCAGAAGTGCTTAGAAATGAACCCGCGGATGAAAAG 2961
Query 3013 TGTGATGTGTACAGCTACGGGGTCATTCTCTGGGAACTCTTTACGTTACAGCAACCATGG 3072
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 2962 TGTGATGTGTACAGCTATGGAGTCATTCTCTGGGAACTCTTTACGTTACAGCAGCCATGG 3021
Query 3073 GGAAAAATGAACCCAATGCAAGTGGTTGGCGCGGTTGGTTTTCAACATCGACGACTTGAT 3132
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3022 GGGAAAATGAACCCAATGCAAGTGGTTGGCGCGGTTGGGTTTCAACATCGACGACTTGAT 3081
Query 3133 ATCCCTGAATTTGTGGATCCTGGAATTGCAGATATCATCAGGAAATGTTGGCAGACGGAT 3192
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3082 ATCCCTGATTTTGTGGATCCTGAAATTGCAGATATCATCAGGAAATGTTGGCAGACGGAT 3141
Query 3193 CCAAGGTTAAGACCAAGTTTTGGAGAGATCATGGATTCTTTAAAGCAGCTACAGAAACCT 3252
|||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct 3142 CCAAGGTTAAGACCAAGTTTTGCAGAGATCATGGCTTCTCTAAAGCAGCTACAGAAACCT 3201
Query 3253 ---AT----CCA--------GAGAGCAGCAGTTCCCAGTTCTTCTGCATTG---ACCACT 3294
|| ||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct 3202 GTGATGGGTCCAAACATCCAGAGAGCAGCAGTTCCCAGTTCTTCTGCGTTGTTGACCACT 3261
Query 3295 GATGAGCAGGAACAATAACATCATGCTTGATGAAGAAGATGACTAAATGATGATGAAGGT 3354
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 3262 GATGAGCAGGAACAATAACATCATGCATGATGAAGAAGATGACTAAATGATGATGATGGT 3321
Query 3355 GGGGATCATTCTTTACATATTA-ATGTTCTGTGGTGTGCT-GTCCATGTGTATTCACCAT 3412
||| |||||||||||||||||| ||||||||||| ||||| || ||||||| ||||||||
Sbjct 3322 GGG-ATCATTCTTTACATATTATATGTTCTGTGGCGTGCTTGTTCATGTGTCTTCACCAT 3380
Query 3413 GTTTTGTTTACAAATTGTaaaaaaagat 3440
||||||||||||||||||||||||||||
Sbjct 3381 GTTTTGTTTACAAATTGTAAAAAAAGAT 3408
> Ahg476506 jgi|Araly1|476506|fgenesh2_kg.2__1636__AT1G73660.1
Length=3871
Score = 1245 bits (674), Expect = 0.0
Identities = 1201/1449 (83%), Gaps = 62/1449 (4%)
Strand=Plus/Plus
Query 652 TCCAAGGATCCAGAAGTTGAAGAAGA-ATATCAGATACAGTTGGCTCTAGAGTTAAGTGC 710
||||||||||||| ||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 893 TCCAAGGATCCAGCTGTTGAAGAAGAGA-ATCAGATACAGTTGGCTTTAGAGTTAAGTGC 951
Query 711 TAGGGAGGATCCTGAAGCTGCTCAGATTGAGGCTATGAAGCAGTTCAGCTTAGGTTCTCG 770
||| || |||||||| ||| |||||||||||||||| ||||| ||||| ||||| |
Sbjct 952 TAGAGAAGATCCTGAGGCTACTCAGATTGAGGCTATTAAGCAATTCAGTTTAGG----C- 1006
Query 771 TCCTTCTGCTCCCGAGAA-TACTCCAGCTGAACTCATGGCATATAGATATTGGAATTATA 829
| ||| |||||| ||||| | ||||||| |||||||| || ||| | || |||||||| |
Sbjct 1007 T-CTTGTGCTCCTGAGAACT-CTCCAGCCGAACTCATCGCTTATCGGTACTGGAATTACA 1064
Query 830 ACTGTCTTGGCTATGATGACAAGAT-TGTGGATGGTTTCTATGACCTGTGTGGAGTAATG 888
| ||||||||||||||||||||||| | |||||||||| |||||| ||| |||||| |||
Sbjct 1065 ATTGTCTTGGCTATGATGACAAGATCT-TGGATGGTTTTTATGACTTGTATGGAGTGATG 1123
Query 889 AATGAATCTTCCTTAAAAAGAATACCTCCCTTAG-TTGATCTTCAGGGGACACTTGTGTC 947
|||| ||| || | | ||||||||||| |||| | | |||||||| ||||||| ||| ||
Sbjct 1124 AATGTATCCTCATCAGAAAGAATACCT-CCTTTGCTCGATCTTCAAGGGACACCTGTTTC 1182
Query 948 AGATGGTGTAACTTGGGATGCTGTTCTAGTGAACAGCAGCAAAGATTCTAATCTGTTGAG 1007
||| ||||| || ||||| |||||||| |||||||| || |||||||||||||||||
Sbjct 1183 AGACGGTGTGACATGGGAAGCTGTTCTTGTGAACAGAAGTGGGGATTCTAATCTGTTGAG 1242
Query 1008 ACTTGAACAAATGGCTCTTGATATTGCAGCAAAATCAAAG-TCAGCGTCTTCTTCAGGGT 1066
|||||||| ||||||||||||||||| || ||||| ||| |||| ||||| || || |
Sbjct 1243 GCTTGAACAGATGGCTCTTGATATTGCTGCTAAATC-AAGATCAGTTTCTTCCTCTGGTT 1301
Query 1067 TTGTGAACAGTGAATTGGTAAGGCAACTGGC-AGTTTTAGTTGCTGATTACATGGGTGGA 1125
||||||||||||||||||||||| ||||||| | |||| |||| |||||||||||||||
Sbjct 1302 TTGTGAACAGTGAATTGGTAAGGAAACTGGCTA-TTTTGGTTGGAGATTACATGGGTGGA 1360
Query 1126 CCAGTTTTGGATCCAGATAGCACGTTAAGAGCTTGGTGGAGTCTGAGCTACAGCTTGAAA 1185
||||| || | |||||||| | ||| ||||||||| ||||||| |||||||| ||||||
Sbjct 1361 CCAGTCGTGCACCCAGATAGTATGTTGAGAGCTTGGAGGAGTCTTAGCTACAGTTTGAAA 1420
Query 1186 GCAACCCTCCGTAGCATGGTTCTGCCCCTGGGTTCTCTAACTATTGGATTGGCTCGTCAT 1245
||||| || | ||||||||| |||| || ||||||||||||||||| |||||||||||
Sbjct 1421 GCAACTCTTGGAAGCATGGTTTTGCCACTTGGTTCTCTAACTATTGGTTTGGCTCGTCAC 1480
Query 1246 CGTGCCTTGTTATTCAAAGTTTTGTGTGATAGTGTCGGCGTTCCTTGTCGAATAGTCAAA 1305
|| ||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||
Sbjct 1481 CGGGCCTTGTTATTCAAAGTATTGTGTGATAGTGTTGGTGTTCCTTGTCGGATAGTCAAA 1540
Query 1306 GGACAGCAATATACCGGTTCAGATGATGTGGCAATGAACTCCATTAAGACTGATGATGGC 1365
|||||||||||||||||||| || |||||||||||||||| |||||| |||||||||||
Sbjct 1541 GGACAGCAATATACCGGTTCTGAAGATGTGGCAATGAACTTTATTAAGGCTGATGATGGC 1600
Query 1366 AGGGAGTACATTGTTGATCTCATGGGAGATCCAGGCACGCTTATCCCCGCTGATGCAGCT 1425
|||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||
Sbjct 1601 AGGGAGTACATTGTTGATCTCATGGGAGATCCCGGCACACTTATTCCAGCTGATGCAGCT 1660
Query 1426 GGACTACAAATGGACTTTGATGATTCTGTCTACTCTGCCAGTCCCAGAGATGTTGATTCA 1485
||||||||||| |||| |||||| |||| ||| || || ||||| |||| || ||||
Sbjct 1661 GGACTACAAATAGACTATGATGAATCTGCCTATTCCGCTAGTCCTGGAGACAATGTTTCA 1720
Query 1486 TCTCATGTAGCTTCTTCCAGCAGTGGGGTCGAGAGCTCAATTGAAGA-ACACACAGAATC 1544
| |||||||||||||||||||| |||| | ||||||||| ||||||| | | |||| |
Sbjct 1721 TTTCATGTAGCTTCTTCCAGCAATGGGATTGAGAGCTCATTTGAAGAGA-ATGCAGAGT- 1778
Query 1545 TTGGT-CAGCGGAACATCGTTCTAGGACCAAGGGTTCCCGGGAG-GAAAACCAATCTGCA 1602
|| | ||| |||| ||| |||||| |||||| |||| ||| | |||| |||||| | |
Sbjct 1779 TTCGAACAGGGGAAGATCATTCTAGTACCAAGAGTTCTGGGGCGAGAAA-CCAATCCGGA 1837
Query 1603 GGTGGAGGGGATCTCAT-GAT--TCCAAATATT---AGGGAAGCTGTG-G------GAAG 1649
|||| ||| ||||||| | | |||||| ||| ||||||| ||| | ||||
Sbjct 1838 GGTGAAGGCAATCTCATTGTTCATCCAAAGATTTCTAGGGAAGAAGTGAGAAATCAGAAG 1897
Query 1650 --TC---AAAAGGCTCC-TGTTCAACATCTTTCCAGCAAGCCTACTCATTCTTTCACTCA 1703
| |||||||||| | ||||| |||| || |||| ||||| |||||||||||| ||
Sbjct 1898 AATGTTGAAAAGGCTCCAT-TTCAAAATCTGTCTAGCAGGCCTATTCATTCTTTCACCCA 1956
Query 1704 TGCCAGATCACCTTCGTGGACTGAAGGTGTTAGCTCTCCAGCTGGAC-GCAGGATGAAAG 1762
| ||||||||||| ||||||||||| |||||||| ||||||| || | ||||||||||
Sbjct 1957 TATGAGATCACCTTCTTGGACTGAAGGGGTTAGCTCCCCAGCTGCACAG-AGGATGAAAG 2015
Query 1763 TCAAAGATGTTTCACAATATATGATTGATGCTGCCAAAGAGAATCCACAACTAGCTCAGA 1822
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2016 TCAAAGATGTTTCACAATATATGATTGATGCTGCCAAAGAGAATCCACGGTTAGCTCAGA 2075
Query 1823 AGCTTCATGATGTGTTACTTGAAAGTGGAGTTGTAGCTCCTCGAAATTTATTTTCGGAAG 1882
||||||||||||| ||||||||||| |||||||||||||||| | ||||||||| ||||
Sbjct 2076 AGCTTCATGATGTATTACTTGAAAGCGGAGTTGTAGCTCCTCCCAGTTTATTTTCCGAAG 2135
Query 1883 TCTATTCAGAGTCAAT-GGAGGCAACAGGTGAAATCAAAT-CTGTGGCTGAATCCAATGA 1940
| ||| | || |||| ||||||||| | ||||| |||| || | ||||| |||| ||
Sbjct 2136 TTTATCCCCAG-CAATTGGAGGCAACTGTTGAAAGCAAAAACTC-GACTGAAGCCAA-GA 2192
Query 1941 T-GAGAAAGGGAAAGATTTTG-GAACAA-TCCAGCAAGGAAGAAACCAGAGCAACCTTGG 1997
|||||||| |||||||| | || || || || |||||||| |||| | | ||||
Sbjct 2193 AAGAGAAAGGAAAAGATTTAGAGA-CAGCTC-AGGAAGGAAGACACCAAAACGGTTTTGG 2250
Query 1998 CCCTGTGAGGTTTTTGCCTCCTCTT-CCAAGAC--CGCAATCTAAAGCAATTACCCATGA 2054
|| ||||||||||||||||| || |||||| ||| |||||| ||| | | |||||
Sbjct 2251 TCCAGTGAGGTTTTTGCCTCCA-TTACCAAGAGTACGC--TCTAAAACAAATGCACATGA 2307
Query 2055 CCTACGTGA 2063
| ||||||
Sbjct 2308 TCAACGTGA 2316
Score = 1051 bits (569), Expect = 0.0
Identities = 996/1193 (83%), Gaps = 66/1193 (6%)
Strand=Plus/Plus
Query 2114 GTCACTCTGATTCCTCACATTCTGAAACATC-T--ACTGACTATCCCAGAAATGTTCCTG 2170
|||| |||||||| |||||||||||| |||| | || || ||| |||||| |||||||
Sbjct 2334 GTCAGTCTGATTCTTCACATTCTGAAGCATCTTCGACAGAATATGCCAGAACCGTTCCTG 2393
Query 2171 TTGCCGTAGCTGCAGCGGCTGTTGTTGCGTCTTCCATGGTTG-T--TGCTGCCGCCAAGT 2227
||| ||||||||||| ||||||||||| ||||| ||||||| | |||||| |||||||
Sbjct 2394 CTGCTGTAGCTGCAGCTGCTGTTGTTGCATCTTCAATGGTTGCTGCTGCTGCTGCCAAGT 2453
Query 2228 CAGCAAACTCGGATTCCTCCACTTTAGAACTT--T-------CTGCTG-CA--G---CTG 2272
| || ||||| || |||||| | |||||||| | |||||| || | |||
Sbjct 2454 CTGCTAACTCAGACTCCTCCCCCGTAGAACTTCCTGCGGCCACTGCTGCCACGGCCACTG 2513
Query 2273 CTGCTGCAGTTATGGCGACAGCTGCAGCAGTGAGCAGGCAGTTTGAACTAGATTC-ACTT 2331
||||||||||| |||| |||||||| || ||| |||||| ||||| ||| || | |
Sbjct 2514 CTGCTGCAGTTGTGGCAACAGCTGCGGCCGTGTCCAGGCAACTTGAATTAGGCTCGA-AT 2572
Query 2332 AGCAACGGGGA---T-G--C---T-GG--T--T-CT----G--GT-GGG---CT--TCAT 2364
||| ||||||| | | | | || | | || | || ||| || ||||
Sbjct 2573 AGCGACGGGGATGCTGGTTCTGGTGGGCATGATCCTCAAGGTAGTGGGGACTCTAATCAT 2632
Query 2365 GGGGTAGATTCAGGAGGAGAACGAATATCCGACAGATCTATTGGCAATGAAAGTTCAAAA 2424
||| | |||||||||| ||| ||||||| ||||||||||||| ||| |||||||| ||
Sbjct 2633 GGGCCAAATTCAGGAGGGGAAAGAATATCTGACAGATCTATTGACAACGAAAGTTCCAAG 2692
Query 2425 TCTGATGCTGCAATTGATGATGTAGCTGAATGCGAGATTTTGTGGGAGGAAATTACTGTG 2484
||||| ||| |||||||||| |||| || |||||||||||||| ||||||||| ||
Sbjct 2693 TCTGA--CTG----TGATGATGTATCTGACTGTGAGATTTTGTGGGAAGAAATTACTTTG 2746
Query 2485 GCTGAGCGTATCGGACTGGGATCATACGGAGAGGTATATAGGGGAGATTGGCATGGAACT 2544
| || ||||| ||||| ||||| || ||||| || ||| ||||||||||||| || |||
Sbjct 2747 GGAGAACGTATTGGACTCGGATCTTATGGAGAAGTGTATCGGGGAGATTGGCACGGGACT 2806
Query 2545 GCAGTGGCTGTCAAGAAGTTCATTGACCAAGATATT-ACTGGAGAGGCACTGGAGGAATT 2603
| ||||||||||||||||||| |||| |||||| || || ||||| ||| ||||||||||
Sbjct 2807 GAAGTGGCTGTCAAGAAGTTCCTTGATCAAGAT-TTAACAGGAGAAGCATTGGAGGAATT 2865
Query 2604 CAGAAGTGAGGTCCGGATGATG-AGAAGGCTCAGACACCCTAATATTGTTCTCTTCATGG 2662
||||||||||||||| || ||| | |||| | |||||||| || ||||||||||||||||
Sbjct 2866 CAGAAGTGAGGTCCGAATCATGAAAAAGG-TTAGACACCCCAACATTGTTCTCTTCATGG 2924
Query 2663 GAGCTGTAACCCGCCCACCAAATCTCTCAATTGTTACAGAATTTCTTCCTCGAGGTAGCT 2722
||||||| || || ||||| |||||||||||||||||||| ||||||||| |||||||||
Sbjct 2925 GAGCTGTGACTCGTCCACCGAATCTCTCAATTGTTACAGAGTTTCTTCCTAGAGGTAGCT 2984
Query 2723 TGTATAGGTTAATTCACAGGCCTAATAACCAATTAGATGAGCGAAAGCGTCTGAGGATGG 2782
||||||||||||| ||| |||| |||||||||||||| ||| | | |||||| || ||||
Sbjct 2985 TGTATAGGTTAATCCACCGGCCAAATAACCAATTAGACGAGAGGAGGCGTCTAAGAATGG 3044
Query 2783 CTCTTGATGCTGCTCGTGGAATGAATTATTTACACAGCTGTAATCCGGTAATTGTCCATC 2842
||||||||||||||||||||||||| ||||| ||||||||||||||| | ||||||||||
Sbjct 3045 CTCTTGATGCTGCTCGTGGAATGAACTATTTGCACAGCTGTAATCCGATGATTGTCCATC 3104
Query 2843 GTGATCTTAAA-TCTCCAAACCTTCTAGTTGACAAAAATTGGGTTGTCAAGGTGTGCGAT 2901
| |||| |||| || ||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 3105 GCGATC-TAAAGTCCCCAAACCTTCTAGTTGACAAAAATTGGGTCGTGAAGGTGTGTGAT 3163
Query 2902 TTTGGGTTGTCTAGAATGAAAGTA-AGCACATACCTCTCTTCAAAGTCAACAGCAGGCAC 2960
||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 3164 TTTGGGTTGTCTAGAATGAAA-CACAGTACATACCTCTCTTCAAAGTCAACAGCAGGCAC 3222
Query 2961 GGCTGAATGGATGGCTCCAGAAGTGCTTAGAAACGAACCCGCAGATGAGAAGTGTGATGT 3020
||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 3223 GGCTGAATGGATGGCTCCAGAAGTGCTTAGAAACGAACCTGCTGATGAGAAGTGCGATGT 3282
Query 3021 GTACAGCTACGGGGTCATTCTCTGGGAACTCTTTACGTTACAGCAACCATGGGGAAAAAT 3080
|||||||| || || ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 3283 TTACAGCTATGGTGTGATTCTATGGGAACTCTTTACGTTACAGCAACCATGGGGAAAGAT 3342
Query 3081 GAACCCAATGCAAGTGGTTGGCGCGGTTGGTTTTCAACATCGACGACTTGATAT-CCCTG 3139
|||||| |||||||| ||||| || ||||| ||||| |||||||| ||||| || ||| |
Sbjct 3343 GAACCCGATGCAAGTTGTTGGGGCAGTTGGGTTTCAGCATCGACGTCTTGACATTCCC-G 3401
Query 3140 AATTTGTGGATCCTGGAATTGCAGATATCATCAGGAAATGTTGGCAGACGGATCCAAGGT 3199
| ||||| ||||| | |||||||||| ||||||| ||||| |||||||||||| ||| ||
Sbjct 3402 ACTTTGTCGATCCAGCAATTGCAGATCTCATCAGTAAATGCTGGCAGACGGATTCAAAGT 3461
Query 3200 TAAGACCAAGTTTTGGAGAGATCATGGATTCTTTAAAGCAGCTACAGAAACCT 3252
|||| |||||||||| |||||| |||| |||| |||||| |||||||||||||
Sbjct 3462 TAAGGCCAAGTTTTGCAGAGATAATGGCTTCTCTAAAGCGGCTACAGAAACCT 3514
Score = 100 bits (54), Expect = 6e-20
Identities = 87/102 (85%), Gaps = 5/102 (5%)
Strand=Plus/Plus
Query 319 TCTAACATTTGGAGTATGAAGATGAACATGAAGAAATTTCTCAA-AAAGCTTCGTATCAC 377
|||| |||||||||||||||||||||||||||||| ||||| || ||| |||| ||||||
Sbjct 521 TCTAGCATTTGGAGTATGAAGATGAACATGAAGAACTTTCTTAAGAAA-CTTCATATCAC 579
Query 378 GCCCAATCAA-CGAGACGATGGTGAAGGTTCAGTCTCTAACA 418
||| |||||| | ||| || | |||||| ||||| || ||||
Sbjct 580 GCCGAATCAATC-AGATGAAGCTGAAGGATCAGTTTC-AACA 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132782872197
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5