BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18170.1
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920743 jgi|Araly1|920743|scaffold_102024.1 1129 0.0
> Ahg920743 jgi|Araly1|920743|scaffold_102024.1
Length=781
Score = 1129 bits (611), Expect = 0.0
Identities = 722/773 (93%), Gaps = 18/773 (2%)
Strand=Plus/Plus
Query 47 TAATTAGAG-CCTGAAAATGGCGAATCTGTTCACTGCTACGGCTCCTTTCCTCTCACTCT 105
||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 4 TAATTAGAGCCCTGAAAATGGCGAATTTATTCACTGCTACGGCTCCTTTCCTCTCACTTT 63
Query 106 CGAAGCCATTCACCAAAACGGCATCGTACCACCAGTGTTACGCCTCTTCTTCCAATCCGC 165
| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 64 CAAAGCCATTCACCAAAACGGCACCGTACCACCACTGTTACGCCTCTTCTTCCAATCCGC 123
Query 166 CGGAGCCTGA---GTCTTCTTc-tc--ctcctcctcctccgcctccgcctcAACCGCTGG 219
|||||||||| ||||||||| || || || ||||| | ||||| |||| | | ||
Sbjct 124 CGGAGCCTGAGTCGTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTCCTCCTCCA-C-CT-- 179
Query 220 C-ATCGCAACAGAAGAGGAAGAAGAACGTTGAGACGACGGATTGGGTCGCTTCTTCCTTG 278
| | |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 180 CAACCGCAACAGAAGAGGAAGAAGAAGGTTGAGACGACGGATTGGGTCGCTTCTTCCCTG 239
Query 279 ACCCGGCGGTTTGGAATCGGCGCGGGTCTTGCCTGGGCGGGCTTTCTGGCTTTCGGTGTA 338
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACCCGGCGGTTCGGAATCGGCGCGGGTCTTGCCTGGGCGGGCTTTCTGGCTTTCGGTGTA 299
Query 339 ATCTCCGAGCAGATCAAGACTCGGATTGAGGTTTCTCAGGAAGTAGCTAACACCAGAGAT 398
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTCTCCGAGCAGATCAAGACTCGGATTGAGGTTTCTCAGGAAGTAGCTAACACCAGAGAT 359
Query 399 GTAGAAGAAGAGAAAGAGATTGTGTTGCCCAACGGCATAAGGTACTATGATCAACGGGTT 458
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 GTAGAAGAAGAGAAAGAGATTGTGTTGCCCAACGGCATAAGGTACTATGATCTACGGGTT 419
Query 459 GGAGGAGGAGCAACACCAAGAGCAGGAGACTTGGTAGTGATTGATCTAAAGGGGCAAGTG 518
||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGAGGAGGAGCGACGCCAAGGGCAGGAGACTTGGTAGTGATTGATCTAAAGGGGCAAGTT 479
Query 519 CAAGGAACCGGACAAGTATTCGTGGATACATTTGGAACCAAAGACAAGAAGAAGATGAAG 578
|||||||||| ||||||||| ||||| |||||||||| ||||| ||||||||| |
Sbjct 480 CAAGGAACCGAACAAGTATTTGTGGACACATTTGGAAGCAAAGGCAAGAAGAA-A----- 533
Query 579 CCATTGGCACTTGTGGTGGGTTCAAAACCATATAGCAAAGGATTATGTGAAGGCATAGAT 638
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CCACTGGCCCTTGTGGTGGGTTCAAAACCATATAGCAAAGGATTATGTGAAGGCATAGAT 593
Query 639 TATGTACTAAGGTCCATGAAGGCTGGAGGTAAACGCAGAGTGATTGTTCCACCATCGTTA 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TATGTACTAAGGTCCATGAAGGCTGGAGGTAAACGCAGAGTGATTGTTCCACCATCGTTA 653
Query 699 GGATTTGGTGTAGACGGTGCTGAATTGGAATCGGGTTTGCAGATTCCTCCTAATGCTTCG 758
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 654 GGATTTGGTGAAGACGGTGCTGAATTGGAATCGGGTTTGCAGATTCCTCCCAATGCTTCG 713
Query 759 TTGGAATATATAGTTGAGATTGATAGAGTCTCAATTGCACCAGCTTGAGTTGT 811
||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 714 TTGGAGTATATAGTTGAGATTGATAGAGTCTCAATTGCACCTGCTTGAGTTGT 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36750491988
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5