BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18180.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920744 jgi|Araly1|920744|scaffold_102025.1 1570 0.0
Ahg316308 jgi|Araly1|316308|fgenesh1_pm.C_scaffold_2001341 667 0.0
> Ahg920744 jgi|Araly1|920744|scaffold_102025.1
Length=958
Score = 1570 bits (850), Expect = 0.0
Identities = 919/952 (97%), Gaps = 5/952 (1%)
Strand=Plus/Plus
Query 58 TGATTGGCCGGAGAGAATGGTGAAAGTAATCGATTCCCATTACCTAGCCATCACCGCCAT 117
||||| || | |||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 6 TGATT-GCTGTAGAGAATGGTAAAAGTAATCGATTCCCATTACCTTGCCATCACCGCCAT 64
Query 118 TGTCACCGTGGGTTATCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 TGTCACCGTGGGTTATCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCA 124
Query 178 AGTTACTGACTTTGCCGGAAGTACAAATTTCGTGATACTTGCTGTATTGACTCTGCTTCT 237
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 125 AGTTACGGACTTTGCCGGAAGTACTAATTTCGTGATACTTGCTGTATTGACTCTGGTTCT 184
Query 238 CAAAGGGACATGGCATTATCGTCAGATAGTCTTGACTGTGCTAGTAGTCGTATGGGGACT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 CAAAGGGACATGGCATTATCGTCAGATAGTCTTGACTGTGCTAGTAGTCGTATGGGGACT 244
Query 298 TCGTCTGGGACTGTTCCTCCTTATGAGGATCTTGCAATGGGGTGAAGATCGACGCTTTGA 357
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TCGTCTCGGACTGTTCCTCCTTATGAGGATCTTGCAATGGGGTGAAGATCGACGCTTTGA 304
Query 358 TGACATGCGTGAAAATATTGGGAAACTAGTAGTCTTTTGGATTTTTCAGGCCGTGTGGGT 417
||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TGAAATGCGTGGAAATATCGGGAAACTAGTAGTCTTTTGGATTTTTCAGGCCGTGTGGGT 364
Query 418 TTGGACTGTTAGTTTACCTGTTACCTTTGTTAATGCAAGCAACGGTGGAAGATTGTTTCA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TTGGACTGTTAGTTTACCTGTTACCTTTGTTAATGCAAGCAACGGTGGAAGATTGTTTCA 424
Query 478 GCCCGCAGATGTTATCGGTTGGACAATGTGGGTTGCAGGGTTCTTGATTGAAGCTACAGC 537
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 425 GCCCGCAGATGTTATAGGTTGGACAATGTGGGCTGCAGGGTTCTTGATTGAAGCTACAGC 484
Query 538 TGATCAACAAAAGCTTTCGTTCAAGAAGTGTCCAGAAAACAAAGGAAAATGGTGTGATGT 597
|||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||
Sbjct 485 TGATCAACAAAAGCTTTCATTCAAGAAGTGTCCAGAAAACAAAGGAAGATGGTGCGATGT 544
Query 598 TGGTGTATGGAAGTATTCACGCCATCCAAACTACTTTGGTGAGATGTTACTCTGGTGGGG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TGGTGTATGGAAGTATTCACGCCATCCAAACTACTTTGGTGAGATGTTACTCTGGTGGGG 604
Query 658 CTTATATGTGGCTTCATTGCCTGTGCTTAAAGGTCTCGAGTACCTTGTCATAATTGGACC 717
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 605 CATATATGTGGCTTCATTGCCTGTGCTTAAAGGTGTCGAGTACCTTGTCATAATTGGACC 664
Query 718 AGTCTTTCTCACTTTGCTACTTCTCTTCGTTAGCGGCATACCATTACTCGAGGAATCTGC 777
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 665 AGTCTTTCTCACTTTGCTACTTTTCTTCGTTAGCGGCATACCATTACTCGAGGAATCTGC 724
Query 778 GGACAAAAAGTATGGTAACTTGGGAGCTTATCGACACTACAAGAAGACAACTAGTCCTCT 837
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 GGACAAAAAATATGGTAACTTGGGAGCTTATCGACACTACAAGAAGACAACTAGTCCTCT 784
Query 838 GATTCTCTTACCGCGAGGAGTGTATGGGTACTTACCAATATGGTGCAAATCAGTCTTTCT 897
|||||| ||||| |||||||||||||||||||| |||| |||||||||| ||||||||||
Sbjct 785 GATTCTGTTACCACGAGGAGTGTATGGGTACTTGCCAAAATGGTGCAAAACAGTCTTTCT 844
Query 898 CTTTGAGTTTCCATTGTACAGCCGTAATCTTCCTCAAGAGACTACAGCTTGGGATAGACG 957
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 845 TTTTGAGTTTCCATTGTACAGCCGTAATCTTCCTCAAGAGACTACAGCCTGGGATAGACG 904
Query 958 AAACTCgaagaagagccagagaagcattgactgag--ag--agagaaagaga 1005
|||||||||||||||||||||||| |||||||||| || |||||||||||
Sbjct 905 AAACTCGAAGAAGAGCCAGAGAAGTATTGACTGAGGGAGCGAGAGAAAGAGA 956
> Ahg316308 jgi|Araly1|316308|fgenesh1_pm.C_scaffold_2001341
Length=1359
Score = 667 bits (361), Expect = 0.0
Identities = 562/657 (86%), Gaps = 22/657 (3%)
Strand=Plus/Plus
Query 125 GTGGGTTATCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCAAGTTACT 184
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GTGGTTTACCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCAAGTTACT 732
Query 185 GACTTTGCCGGAAGTACAAATTTCGTGATACTTGCTGTATTGACTCT-GCTTCTCAAAGG 243
|||||||| || || ||||| ||||| ||||||||||| || || || | |||| ||||
Sbjct 733 GACTTTGCTGGTAGCACAAACTTCGTTATACTTGCTGTGTTAACACTTG-TTCTTAAAGC 791
Query 244 GACATGGCATTATCGTCAGATAGTCTTGACTGTGCTAGTAGTCGTATGGGGACTTCGTCT 303
| ||||||| ||| ||||||||||||||| ||||||| || |||||||| ||||| ||
Sbjct 792 CTCTTGGCATTTTCGGCAGATAGTCTTGACTTTGCTAGTTGTGGTATGGGGTCTTCG-CT 850
Query 304 -GGG-ACTGTTCCTCCTTATGAGGATCTTGCAATGGGGTGAAGATCGACGCTTTGATGA- 360
||| | | |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 851 TGGGGA-TATTCCTCCTAATGAGGATCTTGCAATGGGGCGAAGATCGACGCTTTGATGAA 909
Query 361 CATGCGTGAAAATATTGGGAAACTAGT-AGTCTTT-TGGATTTTTCAGGCCGTGTGGGTT 418
|| ||||| ||||| | || |||| | | | ||| |||| | |||||||||||||||||
Sbjct 910 CA-GCGTGGGAATATAGTGAGACTAATCA-T-TTTCTGGACTCTTCAGGCCGTGTGGGTT 966
Query 419 TGGACTGTTAGTTTACCTGTTA-CCTTTGTTAATGCAAGCAACGGTGGAAGAT-TGTTTC 476
||||| ||||| |||||| ||| || ||||||||||||| | |||||| ||| | ||
Sbjct 967 TGGACGGTTAGCTTACCT-TTAACCGTTGTTAATGCAAGTGATGGTGGAGGATCTCTTAA 1025
Query 477 AGCCCGCAGATGTTATCGGTTGGACAATGTGGGTTG-CAGGGTTCTTGATTGAAGCTACA 535
| ||||||||||||||||||||||| ||||||||| | || ||||||||||||||| ||
Sbjct 1026 A-CCCGCAGATGTTATCGGTTGGACTATGTGGGTTTTC-GGTTTCTTGATTGAAGCTGCA 1083
Query 536 GCTGATCAACAAAAGCTTTCGTTCAAGAAGTGTCCAGAAAACAAAGGAAAATGGTGTGAT 595
||||||||||| ||||| || ||||| || | ||| ||||||| ||||||||||||||||
Sbjct 1084 GCTGATCAACAGAAGCTATCATTCAAAAACTCTCCTGAAAACAGAGGAAAATGGTGTGAT 1143
Query 596 GTTGGTGTATGGAAGTATTCACGCCATCCAAACTACTTTGGTGAGATGTTACTCTGGTGG 655
||||| || |||||||||||| | |||||||||||||| |||||||||||||| ||||||
Sbjct 1144 GTTGGAGTGTGGAAGTATTCAAGACATCCAAACTACTTCGGTGAGATGTTACTGTGGTGG 1203
Query 656 GGCTTATATGTGGCTTCATTGCCTGTGCTTAAAGGT-CTCGAGTACCTTGTCATAATT-G 713
|| | | ||||||| ||| |||||||||| ||||| | ||||| ||||||||| || |
Sbjct 1204 GGGATCTTTGTGGCTGCATCGCCTGTGCTTGAAGGTGCA-GAGTATCTTGTCATA-TTCG 1261
Query 714 GACCAGTCTTTCTCACTTTGCTACTTCTCTTCGTTAGCGGCATACCATTACTCGAGG 770
||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 1262 GACCACTCTTTCTCACTTTGCTACTTCTGTTCGTCAGTGGCATACCATTACTCGAGG 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5