BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18200.1
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911632 jgi|Araly1|911632|Al_scaffold_0001_1886 1114 0.0
Ahg476500 jgi|Araly1|476500|fgenesh2_kg.2__1630__AT1G73640.1 553 9e-157
> Ahg911632 jgi|Araly1|911632|Al_scaffold_0001_1886
Length=690
Score = 1114 bits (603), Expect = 0.0
Identities = 663/692 (96%), Gaps = 4/692 (1%)
Strand=Plus/Plus
Query 163 ATGGCGGAGGAATCGTACGACGAAGAGTGCGACTACCTATTCAAGGCGGTGCTGATAGGA 222
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGAGGAATCGTATGACGAAGAGTGCGACTACCTATTCAAGGCGGTGCTGATAGGA 60
Query 223 GACTCCGCCGTCGGAAAATCAAACCTCCTT-TCGAGGTTCTCGAGAGATGAGTTTCGGTT 281
|||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||
Sbjct 61 GACTCCGCCGTCGGAAAATCAAACCT-CTTGTCGAGGTTCTCGAGGGATGAGTTTCGGTT 119
Query 282 AGACTCTAAACCGACCATCGGAGTAGACTTTGCTTACCGGAATGTTCGCGTGGGCGATAA 341
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 AGACTCTAAACCGACCATCGGAGTAGACTTTGCTTACCGGAATGTTCGCGTGGGTGATAA 179
Query 342 GACTATAAAGGCTCAGATATGGGACACCGCCGGCCAAGAAAGATTTAGAGCAATAACGAG 401
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GACTATCAAGGCTCAGATATGGGACACCGCCGGCCAAGAAAGATTTAGAGCAATAACGAG 239
Query 402 TTCGTATTACCGTGGAGCCTTGGGAGCTTTACTAATCTACGACATCACAAGACGAATCAC 461
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCCTATTACCGTGGAGCCTTGGGAGCTTTACTAATCTACGACATCACAAGACGAATCAC 299
Query 462 TTTCAAAAACATTGAGAAA-TGGTTGTCGGAGCTCAGAGGCTTCTCCAGTCCCGAGACTG 520
|||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||| |
Sbjct 300 TTTCAAAAACATTG-GAAAATGGTTGTCGGAGCTCAGAGGCTTCTCTAGTCCTGAGACCG 358
Query 521 TCGTTGTTCTCGTCGGTAACAAATCCGATCTCGGGCAGTCTAGAGAAGTTGAAGAAGAAG 580
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TCGTTGTTCTCGTAGGTAACAAATCCGATCTCGGGCAGTCTAGAGAAGTTGAAGAAGAAG 418
Query 581 AGGGTAAGACTCTAGCAGAATCAGAAGGTCTCTATTTTCTCGAAACATCGGCTTTAGAGA 640
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 419 AGGGTAAGACTCTAGCCGAATCAGAAGGTCTCTATTTTCTCGAAACATCAGCTTTAGAGA 478
Query 641 ACCAAAACGTTGAAGAAGCGTTTCTAAGCATGATCGGACGGATACATGAGGTTTTGACTC 700
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACCAAAATGTTGAGGAAGCGTTTCTAAGCATGATCGGACGGATACATGAGGTTTTGACTC 538
Query 701 AGAAAATCGTTTTAGACAATAGACTCAACGGTGACGGTAACAACGAAAGTAACGGTGCTG 760
|||| | || |||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 539 AGAAGACCGCGGTAGACAATAGACCCAACGGTGACGGTAACAACGAAAGTAACGGTGCGG 598
Query 761 TCGTTCCGCCCGGTAAAGAGATTGTGAATATTCATGAAGTTACCGCCACTCGACCGTTGA 820
|| |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 599 TCATTCCCCCCAGTAAAGAGATTGTGAATATTCATGAATTTACCGCCACTCGACCGTTGA 658
Query 821 GTACTTCTTTGTCCAATTGTTGCTACAAGTAA 852
||||||||||| ||||||||||||||||||||
Sbjct 659 GTACTTCTTTGCCCAATTGTTGCTACAAGTAA 690
> Ahg476500 jgi|Araly1|476500|fgenesh2_kg.2__1630__AT1G73640.1
Length=850
Score = 553 bits (299), Expect = 9e-157
Identities = 591/727 (81%), Gaps = 39/727 (5%)
Strand=Plus/Plus
Query 150 TTCCTGAGAGAGCATGGCGGAGGAATCGTACGACGAAGAGTGCGACTACCTATTCAAGGC 209
||| ||||| | ||||| || || |||||||| ||||||||||||||| | ||||||||
Sbjct 28 TTCTTGAGACAAAATGGCAGAAGATTCGTACGAGGAAGAGTGCGACTACTTGTTCAAGGC 87
Query 210 GGTGCTGATAGGAGACTCCGCCGTCGGAAAATCAAACCTCCTT-TCGAGGTTCTCGAGAG 268
|||| |||| |||||||| |||||||| ||||||||||| ||| || || || || | ||
Sbjct 88 GGTGTTGATCGGAGACTCAGCCGTCGGGAAATCAAACCT-CTTGTCTAGATTTTCTAAAG 146
Query 269 ATGAGTTTCGGTTAGACTCTAAACCGACCATCGGAGTAGACTTTGCTTACCGGAATGTTC 328
| ||||| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 147 ACGAGTTCCGGTTTGACTCTAAACCAACCATCGGAGTTGAGTTTGCTTACCGGAATGTTC 206
Query 329 GCGTGGGCGATAAGACT-ATAAAGGCTCAGATATGGGACACCGCCGGCCAAGAAAGATTT 387
||| || ||||| | | || ||||||||||| |||||||||||||||||||||||||||
Sbjct 207 ACGTCGGAGATAA-AATCATCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAAAGATTT 265
Query 388 AGAGCAATAACGAGTTCGTATTACCGTGGAGCCTT-GGGAGCTTTACTAATCTACGACAT 446
|| ||||| || |||||||| ||||||||||| || ||| || ||||| || ||||||||
Sbjct 266 AGGGCAATTACAAGTTCGTACTACCGTGGAGCATTAGGG-GCATTACTGATTTACGACAT 324
Query 447 CACAAGACGAATCA-CTTTCAAAAACATTGAGAAATGG-TTGTCGGAGCTCAGAGG-CTT 503
||||||||||| || ||||| | ||||| |||||||| || | | |||| || || |||
Sbjct 325 CACAAGACGAA-CAACTTTCGACAACATCAAGAAATGGCTTTTTG-AGCTTAG-GGACTT 381
Query 504 CT-CCAGTCCCGAGACTGTCGTTGTTCTCGTCGGTAACAAATCCGATCT-CGGGCAGTCT 561
| ||| |||||| || || ||||| |||||||| |||||||||||||| || || |||
Sbjct 382 -TGCCAATCCCGAAACCGTGGTTGTCCTCGTCGGCAACAAATCCGATCTGCGA-CAATCT 439
Query 562 AGAGAAGTTGAAGAAGAAGAGGGTAAGACTCTAGCAGAATCAGAAGGTCTCTATTTTC-T 620
|||||||| |||||||| ||||||||||||||||| |||||||||||||||| | ||| |
Sbjct 440 AGAGAAGTCGAAGAAGACGAGGGTAAGACTCTAGCTGAATCAGAAGGTCTCT-TCTTCCT 498
Query 621 CGAAACATCGGCTTTAGAGAACCAAAACGTTGAAGAAGCGTTTCTAA-GCATGATCGGAC 679
||| || ||||||||||||||| ||||| |||||||| |||||| | ||||||||||
Sbjct 499 CGAGACTTCGGCTTTAGAGAACGTTAACGTCGAAGAAGCATTTCTAGTG-ATGATCGGAC 557
Query 680 GGATACATGAGGTTTTGACTCAGAAAATCGTTTTAGACAATAGACTC-AACGG---T--G 733
||||||| |||||| ||||||||| || | || ||||| | | || ||||| | |
Sbjct 558 GGATACACGAGGTTGTGACTCAGAGGATAGCTTCGGACAACAAA-TCCAACGGAGCTACG 616
Query 734 ACGG-TAACA--AC-GA-AA-G-TAACGGTGCTGTCGTTCC-GCCCGGTAAAGAGATTGT 785
|||| | ||| | | || | ||||||| | ||| |||| | |||||||| |||||
Sbjct 617 ACGGCTCACATTAATGGTAATGGTAACGGTACGGTCCTTCCCGTT-GGTAAAGAAATTGT 675
Query 786 GAATATTCATGAAGTTACCGCCACTCGACCGTTGAGTACTTCTTTGTCCAATTGTTGCTA 845
|||||| || ||||| || || |||| |||||| || || ||| ||||| ||||| |
Sbjct 676 GAATATACACGAAGTCACTGCTACTCAACCGTTAAG--CT-CTTCCTCCAACTGTTGTTT 732
Query 846 CAAGTAA 852
|||||||
Sbjct 733 CAAGTAA 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31527652359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5