BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18210.1
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920747 jgi|Araly1|920747|scaffold_102028.1 1066 0.0
> Ahg920747 jgi|Araly1|920747|scaffold_102028.1
Length=706
Score = 1066 bits (577), Expect = 0.0
Identities = 670/712 (94%), Gaps = 18/712 (3%)
Strand=Plus/Plus
Query 23 TTTACCTTTAACaaaaaaaaaaTGGCAAGCGCGAATCCAGAAACCGCCAAACCCACGCCT 82
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 TTTACCTTTAACAAAAAAAAAATGGCAAGCGCAAATCCAGAAACCGCCAAACCCACGCCA 60
Query 83 GCAACGGTGGACATGGCTAATCCAGAGGAGCTTAAGAAAGTTTTCGACCAGTTTGACTCC 142
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GCATCGGTGGACATGGCTAATCCAGAGGAGCTTAAGAAAGTTTTCGACCAGTTTGATTCC 120
Query 143 AACGGCGACGGCAAGATCTCAGTCCTCGAACTCGGCGGTGTGTTTAAGGCTATGGGGACT 202
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 AACGGTGACGGCAAGATCTCAGTCCTCGAACTCGGCGGTGTGTTTAAGGCCATGGGGACT 180
Query 203 TCCTACACAGAGACGGAACTCAACCGCGTGCTCGAAGAAGTCGATACAGATCGCGACGGT 262
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 181 TCCTACACGGAGACGGAACTCAACCGCGTTCTGGAAGAAGTCGATACAGATCGCGACGGT 240
Query 263 TACATCAACCTCGACGAATTCTCAACTCTCTGTCGCTCGTCTTCCTCCGCCGCAGAGATC 322
|||||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 241 TACATCAACCTCAACGAGTTCTCAACTCTCTGCCGCTCGTCTTCCTCCGCGGCAGAGATC 300
Query 323 CGTGACGCTTTCGATCTCTACGATCAGGACAAAAACGGACTGATCTCCGCCTCTGAGCTT 382
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 CGTGACGCTTTCGATCTCTACGATCAGGACAAAAACGGACTGATCTCCGCCGCTGAGCTT 360
Query 383 CACCAGGTGCTTAACCGTCTCGGGATGTCTTGCTCTGTTGAAGACTGTACTCGTATGATC 442
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CACCAGGTTCTTAATCGTCTCGGGATGTCTTGCTCTGTTGAAGACTGTACTCGTATGATC 420
Query 443 GGACCTGTGGATGCTGACGGCGATGGGAATGTTAATTTCGAAGAGTTTCAGAAGATGATG 502
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 421 GGACCTGTGGATGCTGACGGTGATGGGAATGTCAATTTCGAAGAGTTTCAGAAGATGATG 480
Query 503 ACGTCGTCTTCTCTCCTCAACAGCAATGGATCCGCCGCTCCTCCTTCGACCTA-GGGAGT 561
|||||||||||||||||||||||||||||||||||||||||| || |||||| ||| ||
Sbjct 481 ACGTCGTCTTCTCTCCTCAACAGCAATGGATCCGCCGCTCCT--TT-GACCTAAGGGGGT 537
Query 562 TTTCCAGATTTCAGATCTGGATTTCGGGAATAAGAATAACTATGGAAATTAGGTACT-CT 620
|| ||||||| ||||||||||||| |||||||| |||||| ||| |||||| || ||
Sbjct 538 TTCCCAGATTCCAGATCTGGATTT-GGGAATAA---TAACTAAGGATTTTAGGT-CTTCT 592
Query 621 TTTCTTCTTAAATGTGATCAATCATCA---TCAGTCTAACTTCAATCGGATCTCTTTTCA 677
||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 593 TTTCT-CT-AAATGTGATCAATCATCACCATCAGTCTAACTTCAATCGGATCTCTTTTCA 650
Query 678 TTCATACATGGTTGAGATTTAGATCTGAATATGGATATATATCGTTTGCTCT 729
||||||||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct 651 TTCATACATGGTTGAGATTTAGATCTGAATATG-A-ATATATCGTT-GCTCT 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31832635695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5