BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18250.2
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920750 jgi|Araly1|920750|scaffold_102031.1 1258 0.0
> Ahg920750 jgi|Araly1|920750|scaffold_102031.1
Length=772
Score = 1258 bits (681), Expect = 0.0
Identities = 746/777 (96%), Gaps = 6/777 (1%)
Strand=Plus/Plus
Query 125 TGCTCAGTAGAGCTCCCATCAATGgcttcaatcaacctcttcctcttcgctttccttctt 184
|||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1 TGCTCAGTAGAGCT-CCATCAATGGCTTCAATCAACCTCTTCCTCTTTGCTCTCCTTCTT 59
Query 185 cttctctctcacgcttcagcagcttcaacggtaatcttctACAACAAATGCAAACACCCA 244
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CTCCTCTCTCACGCTT---CAGCTTCAACGGTAATCTTCTACAACAAATGCAAACACCCA 116
Query 245 GTTTGGCCAGGTATCCAACCCAGCGCCGGTCAAAACTTACTCGCCGGCGGTGGTTTTAAG 304
|| |||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 117 GTGTGGCCAGGAATTCAACCCAGCGCCGGCCAAAACTTACTCGCCGGCGGTGGTTTTAAG 176
Query 305 CTTC-CAGCTAACAAAGCCCACTCTCTTCAACTCCCACCACTCTGGTCCGGCCGTTTCTG 363
| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 C-TCTCGGCTAACAAAGCCCACTCTCTTCAACTCCCACCACTCTGGTCCGGCCGTTTCTG 235
Query 364 GGGTCGCCACGGCTGCACCTTCGACAGATCTGGCCGTGGTCACTGCGCCACCGGAGATTG 423
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 236 GGGTCGCCACGGCTGCACCTTCGACAGATCTGGCCGTGGTCATTGCGCCACCGGAGATTG 295
Query 424 CGGCGGTTCTCTCTCCTGCAACGGTGCCGGCGGTGAACCTCCGGCCACTCTCGCCGAAAT 483
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 296 CGGCGGTTCTCTCTCCTGCAACGGTGCCGGAGGTGAACCTCCGGCCACTCTCGCCGAAAT 355
Query 484 CACTCTCGGCCCTGAGCTAGACTTCTATGACGTCAGCCTCGTCGACGGTTATAACCTGGC 543
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 356 CACTCTCGGCCCTGAGCTAGACTTCTATGACGTCAGCCTCGTCGATGGTTATAACCTGGC 415
Query 544 CATGTCGATTATGCCGGTTAAAGGTTCAGGTCAATGTAGCTACGCCGGTTGTGTTAGCGA 603
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 416 CATGTCGATTATGCCGGTTAAAGGTTCCGGTCAATGTAGCTACGCCGGTTGTGTAAGCGA 475
Query 604 TCTAAACCAGATGTGTCCGGTTGGTTTACAAGTCCGGTCACGTAACGGGAAACGTGTAGT 663
|||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 476 TCTAAACCGGATGTGTCCGGTTGGGTTACAAGTCCGGTCACGTAACGGGAAACATGTAGT 535
Query 664 AGCCTGTAAAAGTGCTTGCTCTGCCTTCAATTCACCACAGTACTGTTGCACCGGCTTGTT 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGCCTGTAAAAGTGCTTGCTCTGCCTTCAATTCACCACAGTACTGTTGCACCGGCTTGTT 595
Query 724 CGGTAACCCACAGTCTTGCAAACCAACGGCTTACTCCAAAATCTTCAAAGTCGCTTGCCC 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CGGTAACCCACAGTCTTGCAAACCAACGGCTTACTCCAAAATCTTCAAAGTCGCTTGCCC 655
Query 784 AAAAGCTTACTCTTATGCTTACGACGACCCAACCAGTATCGCCACATGTTCCAAGGCTAA 843
||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 656 TAAAGCTTACTCATACGCTTACGATGACCCAACCAGCATCGCCACTTGTTCCAAGGCTAA 715
Query 844 CTACATCGTCACCTTTTGCCCTCATCATCGCCATTAAATTAGCCAGTAAAGAAGAAG 900
|||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||
Sbjct 716 CTACATCGTCACCTTTTGCCCTCACCATCGCCATTAAATTAACCAGTAACGAAGAAG 772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41592102447
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5