BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18260.1
Length=2331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920751 jgi|Araly1|920751|scaffold_102032.1 3450 0.0
Ahg476490 jgi|Araly1|476490|fgenesh2_kg.2__1620__AT1G73570.1 1062 0.0
> Ahg920751 jgi|Araly1|920751|scaffold_102032.1
Length=2079
Score = 3450 bits (1868), Expect = 0.0
Identities = 2009/2079 (97%), Gaps = 2/2079 (0%)
Strand=Plus/Plus
Query 77 CGGTGGAGGAGGAAGTACAATGAGAATATTAAGCTACGGAATCGTTATTCTCTCTTTACT 136
|||||||||| |||||| ||||||||||| | | ||||||||||||||||||||||||||
Sbjct 2 CGGTGGAGGAAGAAGTAGAATGAGAATATCAGGTTACGGAATCGTTATTCTCTCTTTACT 61
Query 137 CGTTTTCTCTTTCATTGAATTTGGCGTTCACGCTCGTCCCGTCGTTCTCGTCCTCTCAAA 196
||||||||||||| ||||| || |||||||||||||||||| |||||||||||||||||
Sbjct 62 CGTTTTCTCTTTCGTTGAACTTAACGTTCACGCTCGTCCCGTTGTTCTCGTCCTCTCAAA 121
Query 197 TGACGATCTCAATAGCGGCGGCGATGATAACGGAGTCGGAGAGTCCTCTGACTTCGATGA 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TGACGATCTCAATAGCGGCGGCGATGATAACGGAGTCGGAGAGTCCTCTGACTTCGATGA 181
Query 257 GTTTGGAGAATCCGAACCTAAGTCCGAAGAGGAGCTTGATCCCGGTTCATGGCGATCGAT 316
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GTTTGGGGAATCCGAACCTAAGTCCGAAGAGGAGCTTGATCCCGGTTCATGGCGATCGAT 241
Query 317 CTTCGAGCCAGATGACTCAACAGTCCAAGCAGCCTCGCCGCAGTACTACTCCGGCCTCAA 376
|||||||||||||||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct 242 CTTCGAGCCAGATGACTCCACTGTCCAAGCCGCGTCGCCGCAGTATTACTCCGGCCTCAA 301
Query 377 AAAGATTCTATCGGCGGCGAGTGAGGGAAATTTCAGGTTGATGGAAGAAGCAGTGGATGA 436
|| ||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 302 AAGGATTCTATCAGCAGCGAGTGAGGGAAATTTCAGGTTAATGGAGGAAGCAGTGGATGA 361
Query 437 GATAGAGGCTGCTTCTTCAGCTGGAGATCCACACGCACAGTCGATAATGGGGTTCGTTTA 496
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GATAGAGGCTGCTTCTTCGGCTGGAGATCCACACGCACAGTCGATAATGGGGTTCGTTTA 421
Query 497 CGGGATAGGAATGATGCGAGAGAAGAGCAAAAGCAAGTCGTTTCTTCACCATAATTTCGC 556
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 422 CGGGATTGGAATGATGCGAGAGAAGAGCAAAAGCAAATCGTTTCTTCACCATAATTTCGC 481
Query 557 AGCTGCTGGTGGGAATATGCAGTCGAAGATGGCACTTGCGTTCACGTATCTT-CGTCAAG 615
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 482 AGCTGCTGGTGGGAATATGCAGTCGAAGATGGCACTTGCGTTCACGTAT-TTGCGTCAAG 540
Query 616 ATATGCATGATAAAGCTGTTCAATTATATGCTGAATTAGCAGAGACAGCTGTCAATAGTT 675
||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 541 ATATGCATGATAAAGCTGTGCAATTATATGCTGAATTAGCTGAGACGGCTGTCAATAGTT 600
Query 676 TTCTGATCTCAAAGGATTCTCCGGTGGTTGAACCAACTAGAATTCATAGCGGAACTGAAG 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCTGATCTCAAAGGATTCTCCGGTGGTTGAACCAACTAGAATTCATAGCGGAACTGAAG 660
Query 736 AGAACAAAGGTGCTCTAAGGAAATCTCGAGGCGAGGAGGATGAAGATTTCCAGATATTGG 795
| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 661 AAAACAAAGGTGCTCTAAGGAAATCCCGTGGCGAGGAGGATGAAGATTTCCAGATATTGG 720
Query 796 AATATCAGGCACAGAAAGGGAATGCTAATGCAATGTACAAAATTGGACTGTTCTACTACT 855
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 721 AATATCAGGCACAGAAAGGGAATGCTAATGCCATGTACAAAATTGGCCTGTTCTACTACT 780
Query 856 TTGGCCTGCGAGGATTAAGGCGTGATCACACCAAGGCATTGCATTGGTTTTTGAAAGCAG 915
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 781 TTGGCCTGCGAGGATTAAGGCGTGATCACACCAAGGCATTGCACTGGTTTTTGAAAGCAG 840
Query 916 TAGATAAAGGAGAGCCGAGGTCAATGGAACTTCTGGGGGAGATATATGCTAGAGGAGCTG 975
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 841 TAGATAAAGGAGAGCCGAGGTCTATGGAACTTCTGGGGGAGATATATGCTCGAGGAGCTG 900
Query 976 GTGTTGAAAGAAATTATACCAAGGCACTTGAATGGCTTACACTTGCTGCAAAAGAAGGTC 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTGTTGAAAGAAATTATACCAAGGCACTTGAATGGCTTACACTTGCTGCAAAAGAAGGTC 960
Query 1036 TCTATTCAGCATTTAATGGAATTGGCTACTTGTATGTCAAAGGCTATGGAGTAGATAAGA 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCTATTCAGCATTTAATGGAATTGGCTACTTGTATGTCAAAGGCTATGGAGTAGATAAGA 1020
Query 1096 AAAACTATACTAAGGCAAGAGAATATTTTGAGAAGGCTGTTGACAATGAAGACCCCAGTG 1155
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAAATTACACTAAGGCAAGAGAATATTTTGAGAAGGCTGTTGACAATGAAGACCCCAGTG 1080
Query 1156 GGCATTATAACCTTGGAGTTTTGTATCTTAAAGGCATCGGAGTCAACAGGGATGTGAGGC 1215
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1081 GGCATTATAACCTTGGAGTTTTGTATCTTAAAGGCATCGGAGTCAAAAGGGATGTGAGGC 1140
Query 1216 AGGCAACAAAATACTTCTTTGTTGCTGCAAATGCTGGTCAACCAAAGGCTTTCTATCAAC 1275
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGGCAACAAAATATTTCTTTGTTGCTGCAAATGCTGGTCAACCAAAGGCTTTCTATCAAC 1200
Query 1276 TCGCCAAGATGTTCCATACTGGTGTTGGGCTTAAGAAGAATCTGGAGATGGCGACTTCAT 1335
|||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||
Sbjct 1201 TCGCCAAGATGTTCCATACTGGTGTTGGGCTTAAAAAGAACCTGGAAATGGCAACTTCAT 1260
Query 1336 TTTATAAGCTAGTAGCAGAAAGGGGGCCGTGGAGTTCTCTCTCTAGATGGGCTCTTGAAG 1395
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TTTATAAGTTAGTAGCAGAAAGGGGGCCGTGGAGTTCTCTCTCTAGATGGGCTCTTGAAG 1320
Query 1396 CTTACTTAAAAGGTGATGTGGGTAAGGCTTTGATTTTGTACTCAAGGATGGCAGAGATGG 1455
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1321 CTTACTTAAAAGGTGATGTGGGTAAGGCTTTGATCTTGTACTCAAGGATGGCAGAGATGG 1380
Query 1456 GTTATGAAGTGGCACAAAGTAATGCTGCCTGGATCCTCGATAAATACGGCGAAAGAAGCA 1515
|||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 1381 GTTATGAAGTAGCACAAAGTAACGCTGCCTGGATCCTTGATAAATACGGGGAAAGAAGCA 1440
Query 1516 TGTGCATGGGAGTATCTGGATTTTGCACAGACAAAGAGAGACATGAGCGGGCACATTCTT 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TGTGCATGGGAGTATCTGGATTTTGCACAGACAAAGAGAGACATGAGCGGGCACATTCTT 1500
Query 1576 TGTGGTGGCGGGCCTCTGAACAAGGCAATGAACATGCTGCTCTGCTTATTGGAGATGCAT 1635
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1501 TGTGGTGGCGGGCCTCTGAACAAGGCAATGAACATGCTGCTCTGCTCATTGGAGATGCAT 1560
Query 1636 ATTACTATGGCCGGGGAACTGAGAGAGATTTTGTGCGTGCGGCAGAAGCATACATGCATG 1695
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 1561 ATTACTATGGCCGGGGAACCGAGAGAGATTTTGTACGTGCGGCTGAAGCATACATGCATG 1620
Query 1696 CTAAATCACAGTCCAATGCGCAAGCAATGTTCAACCTCGGTTACATGCATGAACATGGAC 1755
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1621 CTAAATCACAGTCAAACGCGCAAGCAATGTTCAACCTCGGTTACATGCATGAGCATGGAC 1680
Query 1756 AAGGACTTCCCTTTGATCTCCATTTAGCAAAACGTTACTATGATGAATCCCTTCAGAGCG 1815
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1681 AAGGACTTCCCTTTGATCTCCATTTAGCAAAACGTTACTATGATCAAGCCCTTCAGAGCG 1740
Query 1816 ATGCAGCCGCGAGATTGCCAGTCACACTTGCTCTCGCTAGCTTATGGCTCCGTAGAAACT 1875
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1741 ATGCAGCCGCCAGATTGCCAGTCACACTTGCTCTCGCTAGCTTATGGCTCCGAAGAAACT 1800
Query 1876 ATGCTGATACCGTCCTGGTGAGAGTTGTGGATTCATTACCAGAAGTGTATCCGAAGGTAG 1935
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1801 ATGCTGATACCGTCCTGGTGAGAGTTGTGGATTCATTACCAGAAGTGTATCCAAAGGTGG 1860
Query 1936 AGACTTGGATAGAGAATGTGGTGTTTGAAGAAGGTAATGCAACAATACTTACACTCTTTG 1995
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1861 AGACTTGGATAGAGAATGTGGTGTTTGAAGAAGGTAATGCAACGATACTTACACTCTTTG 1920
Query 1996 TCTGTCTCATCACAATTCTCTATCTCCGGGAAAGACAACGTAGACAAGTCGTCGTTGTTG 2055
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 TCTGTCTCATTACAATTCTCTATCTCCGGGAAAGACAACGTAGACAAGTCGTCGTTGTTG 1980
Query 2056 CCGATCCAGTGGCTGCTGACGTGGCACAACCGCTCGACGCTGATGTGGCGCAACACCTCG 2115
||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 1981 CCGATCCAGTGGCAGCTGACGTGGCACAACCCCTCGACGCTGACGTGGCACAACACCTCG 2040
Query 2116 CTGCGTTCCCACGGTAATCAATTGATAATCGTTTTCGTC 2154
|||||||||||||||||||||||||||||||||||||||
Sbjct 2041 CTGCGTTCCCACGGTAATCAATTGATAATCGTTTTCGTC 2079
> Ahg476490 jgi|Araly1|476490|fgenesh2_kg.2__1620__AT1G73570.1
Length=1860
Score = 1062 bits (575), Expect = 0.0
Identities = 852/984 (87%), Gaps = 26/984 (3%)
Strand=Plus/Plus
Query 998 GGCACTTGAATGGCTTACACTTGCTGCAAAAGAAGGTCTCTATTCAGCATTTAATGGAAT 1057
|||||||||||| ||||||||||| | |||| ||||||||||||| ||||||||||| |
Sbjct 822 GGCACTTGAATGTCTTACACTTGCGGTAAAACAAGGTCTCTATTCGGCATTTAATGG-CT 880
Query 1058 T-GGCTACTTGTATGTCAAAGGCTATGGAGTAGATAAGAAAAACTATACTAAGGC-AAGA 1115
| || ||||||||||| ||||||||||||||||||| || |||||| |||||||| || |
Sbjct 881 TGGGTTACTTGTATGTTAAAGGCTATGGAGTAGATACGAGAAACTACACTAAGGCGAA-A 939
Query 1116 GAATATTTTGAGAAGGCTGTTGACAATGAAGACCCCAGTGGGCATTATAACCTTGGAGTT 1175
||||| ||||||| ||||| | | |||||||| || || ||||||||||||||||||||
Sbjct 940 GAATACTTTGAGATGGCTGCTAATAATGAAGATCCTAGCGGGCATTATAACCTTGGAGTG 999
Query 1176 TTGTATCTTAAAGGCATCGGAGTCAACAGGGATGTGAGGCAG-GCAACAAAATACTTCTT 1234
||||||||||||||||| ||||| || | ||||||||||| | ||||| ||||| |||||
Sbjct 1000 TTGTATCTTAAAGGCATTGGAGTGAAGAAGGATGTGAGGC-GTGCAACCAAATATTTCTT 1058
Query 1235 TGTTGCTGCAAATGCTGGTCAACCAAAGGCTTTCTATCAACTCGCCAAGATGTTCCATAC 1294
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1059 TGTTGCTGCCAATGCTGGTCAACCAAAGGCTTTTTATCAACTCGCCAAGATGTTCCATAC 1118
Query 1295 TGGTGTTGGGCTTA-AGAAGAATC-TGGAGATGGCGACTTCATTTTATAAGCTAGTAGCA 1352
|| |||||||||| | ||||| | |||| |||||||| | |||||||| |||||||||
Sbjct 1119 GGGCGTTGGGCTTACA-AAGAA-CTTGGAAATGGCGACGACTTTTTATAAACTAGTAGCA 1176
Query 1353 GAAAGGGGGCCGTGGAGTTCTCTCTCTAGATGGGCTCTTGAAGCTTACTTAAAAGGTGAT 1412
||||| || || |||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1177 GAAAGAGGACCATGGAGTTCTCTCTCTAGATGGGCTCTTGAAGCCTACTCGAAAGGTGAT 1236
Query 1413 GTGGGTAAGGCTTTGATTTTGTACTCAAGGATGGCAGAGATGGGTTATGAAGTGGCACAA 1472
||||| |||||||| || ||||| || || ||| ||||| | ||||||||||| ||||||
Sbjct 1237 GTGGGAAAGGCTTTTATATTGTATTCGAGAATGTCAGAGCTCGGTTATGAAGTAGCACAA 1296
Query 1473 AGTAATGCTGCCTGGATCCTCGATAAATACGGCGAAAGAAGCATGTGCATGGGAGTATCT 1532
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 1297 AGTAATGCTGCCTGGATCCTCGATAAATATGGGGAAAGAAGCATGTGCATGGGAGTGTCT 1356
Query 1533 GGATTTTGCACAGACAAAG-AGAGACATGAGCGGGCACATTCTTTGTGGTGGCGGGCCTC 1591
|| ||||||||||| |||| |||| || || ||||| ||||||||||||||||| |||||
Sbjct 1357 GGGTTTTGCACAGA-AAAGGAGAGGCACGATCGGGCTCATTCTTTGTGGTGGCGTGCCTC 1415
Query 1592 TGAACAAGGCAATGAACATGCTGC-TCTGCTTATTGGAGATGCATATTACTATGGCCGGG 1650
||||||||| || ||||||||||| | ||||||||||||||||||| ||||| || ||||
Sbjct 1416 TGAACAAGGAAACGAACATGCTGCAT-TGCTTATTGGAGATGCATACTACTACGGTCGGG 1474
Query 1651 GAACTGAGAGAGATTTTGTGCGTGCGGCAGAAGCATACATGCATGCTAAATCACAGTCCA 1710
| || ||||| ||||| |||||||| ||||| || |||||| |||||||||| || || |
Sbjct 1475 GTACAGAGAGGGATTTCGTGCGTGCAGCAGAGGCGTACATGTATGCTAAATCTCAATCAA 1534
Query 1711 ATGCGCAAGCAATGTTCAACCTCGGTTACATGCATGAACATGGACAAGGACTTCCCTTT- 1769
|||||||||||||||||||||||||||| |||||||| |||||| |||| ||||| |||
Sbjct 1535 ATGCGCAAGCAATGTTCAACCTCGGTTATATGCATGAGCATGGAGAAGGTCTTCC-TTTC 1593
Query 1770 GATCTCCAT-TTAGCAAAACGTTACTATGATGAATCCCTTCAGAGCGATGCAGCCGCGAG 1828
||||||||| || || ||||||||||| ||| | |||| ||||||||||| || || |
Sbjct 1594 GATCTCCATCTT-GCTAAACGTTACTACGATCAGGCCCTCCAGAGCGATGCTGCTGCCAA 1652
Query 1829 ATTGCCAGTCACACTTGCTCTCGCTAGCT-TATGGCTCCGTAGAAACTATGCTGATACCG 1887
|||||| |||||||| ||||| || || | ||||| | || ||||||||||||||||| |
Sbjct 1653 ATTGCCTGTCACACTAGCTCTTGCGAG-TGTATGGGTTCGCAGAAACTATGCTGATACTG 1711
Query 1888 TCCTGGTG-AGAGTTGTGGATTCATTACCAGAAGTGTATCCGAA-GGTAGAG-ACTTGGA 1944
||||||| | ||| ||||||| |||||||||||||||| ||| ||| ||| | | ||
Sbjct 1712 CCCTGGTGCA-AGTACTGGATTCCTTACCAGAAGTGTATC-GAAAGGTGGAGGAATGGG- 1768
Query 1945 TAGAGAATGTGGTGTTTGAAGAAG 1968
|||||||||||||||| |||||||
Sbjct 1769 TAGAGAATGTGGTGTTGGAAGAAG 1792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87798014725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5