BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18265.1
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472042 jgi|Araly1|472042|fgenesh2_kg.1__1996__AT1G18265.1 612 2e-174
> Ahg472042 jgi|Araly1|472042|fgenesh2_kg.1__1996__AT1G18265.1
Length=823
Score = 612 bits (331), Expect = 2e-174
Identities = 405/440 (92%), Gaps = 7/440 (2%)
Strand=Plus/Plus
Query 539 GCT-TGATCACATCCAGAACAGAGAAAATACCGTGGCGTTATCGGAGACAGAGCTCGACG 597
||| |||||||||| |||||||||| | ||| ||||| ||||||||||||||||||||||
Sbjct 388 GCTGTGATCACATCAAGAACAGAGACAGTACTGTGGCATTATCGGAGACAGAGCTCGACG 447
Query 598 AGAAGAATCATCATGGCGAAGAAGAGGAAAGCGAGGACGAAGAAGAATCACAGTCTCAGA 657
|||||||| || ||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 448 AGAAGAATTATTATGGCGAAGAAGAGGAAAGCGAGGACGAAGAAGAATCACGGCCTCGGA 507
Query 658 ATGATGAAGACCAATTGTTAGACGTTATTACTCTGAGAACAATGGTgaagagagagagaa 717
||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||||| |
Sbjct 508 GTGATGAAGACCAAGTGTTCGACGTAATTACTCTGAGAAAAATGGTGAAGAGAGAGAGGA 567
Query 718 aacgtggagattacatgaagaaagagctggagaaggagagaagagCAGCTGAATCAGCTG 777
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 AACGTGGAGATTGTATGAAGAAAGAGCTGGAGAAGGAGAGAAGAGCAGCTGAATCAGCTG 627
Query 778 CTGAAGAAGCCATGGCTATGCTTCTGAAGCTACGGATGGAGAAAAGCGTTGTGGAGATGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 CTGAAGAAGCCATGGCTATGCTTCTGAAGCTACGGATGGAGAAAAGCGTTGTGGAGATGG 687
Query 838 AGACAAAACAATACAAGAGAGTCGCCGAACAGAAGCAAGTGTACGATCAAGAAGTGATTC 897
|| |||| |||||||||||||| || ||||||||||||||||| |||||| |||||||||
Sbjct 688 AGGCAAAGCAATACAAGAGAGTTGCGGAACAGAAGCAAGTGTATGATCAACAAGTGATTC 747
Query 898 AATCATTACAGTGGATGTTGATGAAGCTTGATGATGACGAAGACAAGATTCAA-ATGTAA 956
||||||||||||||||||| ||||||| |||||| |||||||||||||||| | |||
Sbjct 748 AATCATTACAGTGGATGTTAATGAAGCCTGATGA---CGAAGACAAGATTCAAGAC-TAA 803
Query 957 A-CTGTTTGATCCTCTGttt 975
| || |||||||||||||||
Sbjct 804 AACTCTTTGATCCTCTGTTT 823
Score = 387 bits (209), Expect = 1e-106
Identities = 245/262 (94%), Gaps = 3/262 (1%)
Strand=Plus/Plus
Query 126 TTC-TTTGTAATGGAGATTACTTCATTTCTGAAGCTTTTGAGTCAAACTGATGGTTTTGG 184
||| ||| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 35 TTCTTTTTTCATGGAGATTGCTTCATTTCTGAAGCTTTTGAGTGAAACTGATGGTTTTGG 94
Query 185 ATTTGGGATCTTCGT-TATTGGTTGCTCCTCTCAGTTTTTCAATCTCGTCTTTCTCTGTT 243
||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 ATTTGGGATTTTCGTCT-TTGGTTGCTCCTCTCAGTTTTTCAATCTCGTCTTTCTCTGTT 153
Query 244 GTTTGCTTCTTTTGGGACTAAAGTTTCTATCTTTCAAAGGTACTTCATTGTTTTTGCAGT 303
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 154 GTTTGCTTCTTTTGGGACTAAAGTTTCTATTTTTCAAAGGCACTTCATTGTTTTTGCAGT 213
Query 304 ATTTAGAGAAGATCAATCGAATTTCTCCGAACATTGAGTTTTTCAATTCCTTCAATCGAG 363
|||||||||||||| ||||||||||| |||| ||||||| ||||||| ||||| ||||||
Sbjct 214 ATTTAGAGAAGATCTATCGAATTTCTTCGAAGATTGAGTGTTTCAATGCCTTCGATCGAG 273
Query 364 AACACAAGGATTGcaacaacaa 385
|||| |||||||||||||||||
Sbjct 274 AACATAAGGATTGCAACAACAA 295
Score = 172 bits (93), Expect = 4e-42
Identities = 101/105 (96%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 401 caacaacaaTGGGTTCATTTCAAAATCTCATTTGGCTGATGGATTGGATCAGAAGAAACC 460
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 287 CAACAACAATGGGTTCATTTCAAAATCTAATTTGGTTGATGGATTGGATCAGAAGAAACC 346
Query 461 AATCATTTTACACTGGAGTTCTGATTCTACTAATAGATTGAGCTG 505
||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 347 CATCATTTTACACTGGAGTTCTGATTCTACTAATGGATTGAGCTG 391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38771006589
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5