BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18280.1
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911640 jgi|Araly1|911640|Al_scaffold_0001_1894 837 0.0
> Ahg911640 jgi|Araly1|911640|Al_scaffold_0001_1894
Length=546
Score = 837 bits (453), Expect = 0.0
Identities = 503/527 (95%), Gaps = 3/527 (1%)
Strand=Plus/Plus
Query 87 TCGCCGTCGCCGTCGTTCTTGTATTTTGCTACGTTACGTCGTCTAATGCTCAGATGACTT 146
||||||||||||||||||||||||||||| ||||||||||||||||| || | ||||
Sbjct 23 TCGCCGTCGCCGTCGTTCTTGTATTTTGCGCCGTTACGTCGTCTAATG--CACA-GACTA 79
Query 147 CACCACCGAGCGGCGGTGCAGGAGGAGACGCACACTCACTGCCGTGTATTCAGAAACTGA 206
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 80 CACCACCGAGCGGCGTTGCAGGAGGAGATGCACACTCACTGCCGTGTATTCAGAAACTGA 139
Query 207 TGCCGTGTCAGCCGTATCTTCACTTGGCGACTCCGCCGCCGGCGACGTGTTGCATGCCGT 266
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 140 TGCCGTGTCAGCCGTATCTTCACTTGGTGACTCCGCCGCCGGCGTCGTGTTGCATGCCGT 199
Query 267 TGAATGAGATCGTAGCCAAAGACGCCACGTGTCTCTGCGCTGTCTTTAACAACGTTGATA 326
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||
Sbjct 200 TGAATGAGATCGTAGCCAAAGACGCGACGTGTCTCTGCGCCGTCTTCAACAACGTCGATA 259
Query 327 TGCTCAAATCGCTTAACCTCACTAAAGAAAACGCTCTCGATCTCCCCAAGGCTTGTGGCG 386
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 260 TGCTCAAATCGCTTAACCTCACTAAAGAAAACGCTCTCGATCTCCCCAAAGCTTGTGGCG 319
Query 387 CCAAAGCTGACGTGTCACTATGCAAAACCAGCGCCGGTACTAATTCGTCTTCAACACCGC 446
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 320 CCAAAGCTGACGTGTCACTATGCAAAACCAGCGCCGGAACTAATTCGTCTTCAACACCGC 379
Query 447 CGGCAACCCCGAAAACTCCTCCGGCATCTTCCACCAGTACCGGAACAGGAAGCGGATCAA 506
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 380 CGGCAACCCCCAAAACTCCTCCAGCATCTTCCACCAGTACCGGAACAGGAAGCGGTTCAA 439
Query 507 CCGGAAATGCAGCTCCTTCGACGGCCAAGCCAACAAGCTCAGCCCCGGCCATCAACTTCG 566
||||| |||||||| ||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 440 CCGGAGATGCAGCTTCTTCGACGGCCAAACCAACAAGCTCAGCTCCGGCCATCAACTTCG 499
Query 567 GTGGACTTAGCTTTGCATCGGCTGTCGTGGCAACACTCTTCTTCTGA 613
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 GTGGACTTAGCTTTGCATCGGCTGTCGTGGCAACACTCTTCTTCTGA 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28401573165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5