BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18290.1
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472046 jgi|Araly1|472046|fgenesh2_kg.1__2000__AT1G18290.1 1223 0.0
> Ahg472046 jgi|Araly1|472046|fgenesh2_kg.1__2000__AT1G18290.1
Length=958
Score = 1223 bits (662), Expect = 0.0
Identities = 871/967 (90%), Gaps = 34/967 (4%)
Strand=Plus/Plus
Query 18 tctctctttctatttctctttctctttctcttgttcgtctactctGATCACAATAATGGG 77
||||||| | | |||||| || || |||||| |||| ||||||| |||||||||||||||
Sbjct 4 TCTCTCTCTGTGTTTCTC-TT-TCGTTCTCTCGTTCTTCTACTCGGATCACAATAATGGG 61
Query 78 AAACACATCTTCATGCGCACCATTGATCATATCAACAAACTCATCCTCAGGAGTGGTTAA 137
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 62 AAACACATCTTCATGCGCACCGTTGATCATATCAACAAACTCATCCTCAGGAGTAGTCAA 121
Query 138 AATCTTGGCTCCATTCACCGGAACTCTTGAAGTTTTCTCAAAACCCATCAAAACCTCCGA 197
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 122 AATCTTGGCTCCATTCACCGGAACTCTCGAAGTTTTCCCAAAACCCATCAAAACCTCCGA 181
Query 198 CATCGTCTCTAGACACTCCGGCCACTTTATTACCGACTCAACTTTACTCCAAATCAGCCA 257
|||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct 182 CATCGTCTCTCGACGCTCCGGCCACTTTATCACCGACTCAACATTACTCCAAATCGGCCA 241
Query 258 CCGAGTCACCGCCGTGTCTCCCGACGAATATTTACGGCCGAGACGACATCTCTACCTCCT 317
||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||||
Sbjct 242 ACGAGTCACCGCCGTGTCTCCCCACGAGTTTTTAAGGCCGAGACGACATCTCTACCTCCT 301
Query 318 CCTCCCGACCGACATGCTCTTCTCTGTCTTAACACAAGAAGAACTTTCTCTCATCTCCAA 377
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 302 CCTCCCGACCGACATGCTCTTCTCTGTCTTAACACATGAAGAACTCGCTCTCATCTCCGA 361
Query 378 CAAAGCCGCGGAGACACTCAACAAAAGCCGGTATAACCATTTGAAGAGAATATTCCCGGT 437
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 362 CAAAGCCGCGGAGACACTCAACGAAAGCCGGTATAGCCATTTGAAGAGAATATTCCCTGT 421
Query 438 CTGCATATTTCCGATGACCGGAGACAGAAGAAGAAACCCATCATCAGTTAATGA--A-GA 494
|||||||||||| ||| ||||||| |||||||||| ||||||||| |||||| | ||
Sbjct 422 TTGCATATTTCCGGCGACGGGAGACAAAAGAAGAAACTCATCATCAGCTAATGATGATGA 481
Query 495 T---CGA-GCTCATGATGGTGTGGAAATAAGAGAAACCCTAGATGAGAAGGTACTATACG 550
| | | | ||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 482 TAATC-ATGATCACGATGGTGTGGAAATAAGAGAAACCCTAGATGAGAAGGTACTCTACG 540
Query 551 AATCAAAACATGGATCTTGGAGGCCTAAATTGGAGACGATCGTGGAGAGCTAAATGCCTA 610
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 AATCAAAACATGGATCTTGGAGGCCTAAGTTGGAGACGATCGTGGAGAGCTAAATGCCTA 600
Query 611 AAATCTCGAGGATCATTAAAATACTATATATATAAACAAATCAATTTTCAAACGTAGACG 670
|| ||||||||||||||| |||||||||||| |||| |||||||||||||| ||||||
Sbjct 601 AAGTCTCGAGGATCATTATAATACTATATATGTAAAAAAATCAATTTTCAATCGTAGATT 660
Query 671 AGTAttttgttcttttattt-ttcctgattttttGTCCGACTTT-AAAGAGAAATTGAGG 728
||||||||||| |||||||| ||| ||||||||||||||| ||| ||||||||||||||
Sbjct 661 AGTATTTTGTTTTTTTATTTATTCTTGATTTTTTGTCCGAGTTTTAAAGAGAAATTGAGT 720
Query 729 CTTA-T-AT--GGTTTTGTTCATGATTTGAATATT-CGTGTAGATAA--T--TT-AG-TG 777
|||| | || |||| ||||| |||||||| ||| |||||||||| | || | |
Sbjct 721 CTTAATTATATGGTT--GTTCACGATTTGAA-ATTTCGTGTAGATACGGTGATTCAAAT- 776
Query 778 ATTCAATTGTGTAATTATAGGTTT-ATTTAATTTATACTGGACAAGAATTGGATAAAAAG 836
||||||||||||||||| ||| | ||| |||||||| |||||| |||||||||||||||
Sbjct 777 ATTCAATTGTGTAATTA--GGTCTGATT-AATTTATAATGGACATGAATTGGATAAAAAG 833
Query 837 GATATTGGTCAACGAATCAAAGAATTGGGTTTTTTGGTAATCCAGATTTTAGGTACAGCt 896
||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 834 GATGTTGGTCAACGAATCAAAGAATTGGGTTTTT-GGTAATCCAGATTTCAGGTACAACT 892
Query 897 attttggtatttggtacgtatttatatatagtatacatatattttcaactttggtat-gt 955
||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | ||
Sbjct 893 ATTTTGGTATTTGGTACGTATATATATATAGTATGCATATATTTTCAACTTTGGT-TCGT 951
Query 956 ataCTTT 962
|||||||
Sbjct 952 ATACTTT 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35835541980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5