BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18300.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312784 jgi|Araly1|312784|fgenesh1_pm.C_scaffold_1001564 1048 0.0
Ahg908965 jgi|Araly1|908965|Al_scaffold_0002_2046 377 7e-104
> Ahg312784 jgi|Araly1|312784|fgenesh1_pm.C_scaffold_1001564
Length=624
Score = 1048 bits (567), Expect = 0.0
Identities = 605/624 (97%), Gaps = 0/624 (0%)
Strand=Plus/Plus
Query 155 ATGACAGGGTTCTCTGTGTCTCTTTTTGTGTCAAACTTGTCAAATGTGGCCTCGTATTTG 214
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1 ATGACAGGCTTCTCTGTGTCTCTTTTCGTCTCAAACTTGTCAAATGTGGCCTCGTATTTG 60
Query 215 TCGCCCATCTTCGAGAACATCCCCTCCACCAAGGTTGTTCCCGCACAGATCGAGAAAGTT 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGCCCATCTTCGAGAACATCCCCTCCACCAAGGTTGTTCCCGCACAGATCGAGAAAGTT 120
Query 275 GTCTCTTTGGTCTCTCGTACCGGTCGCGATTTGCAGCGTTACGATCACGCTGGCTATCGT 334
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GTCTCTTTGGTCTCTCGTACCGGTCGCGATTTGCAGCGTTACGATAACGCTGGCTATCGT 180
Query 335 CAAGTCGTCGGATGTGTACCGTATAGATACAAGAAACAAGAAGTCAATGGAGTTGAAACC 394
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 181 CAAGTCGTCGGATGTGTACCGTACAGATACAAGAAACAAGAAGTCAATGGAATTGAAACC 240
Query 395 CAAGTAATCCAAGTTCTTCTTGTCAGTGCTCAAAAGGGCAAAGGAATGTTATTTCCAAAA 454
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAGAAATCCAAGTTCTTCTTGTCAGTGCTCAAAAGGGCAAAGGAATGTTATTTCCAAAA 300
Query 455 GGAGGTTGGGAGACGGATGAATCAATGGAGGAAGCTGCTTTGAGAGAGACGATCGAAGAA 514
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 301 GGAGGTTGGGAGACGGATGAATCAATGGAGGAAGCAGCTTTGAGAGAGACAATCGAAGAA 360
Query 515 GCGGGTGTAACAGGAGAGCTCGAAGAAAAGCTTGGGAAATGGCAATACAAAAGCAAAAGA 574
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCGGGTGTAACGGGAGAGCTCGAAGAAAAGCTTGGGAAATGGCAATACAAAAGCAAAAGA 420
Query 575 CATAGCATAATTCACGATGGGTATATGTTTGCTTTGCTTGTCAGTCAAGAGTTCGAGCGA 634
||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 421 CATTGCATAATTCACGATGGATACATGTTTGCTTTGCTTGTTAGTCAAGAGTTCGAGCGA 480
Query 635 TGGCCTGAGGCGGAAATGAGACAACGCAGATGGGTAAGTTTGGATGAAGCAAGAGAAGTA 694
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 TGGCCTGAGGCGGAGATTAGACAACGCAGATGGGTAAGTTTGGACGAAGCAAGAGAAGTA 540
Query 695 TGTCAGAATTGGTGGATGAGAGAAGCTCTTGAAGCATTCATTAACCTGAAATGTCTAGCT 754
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 541 TGTCAGAATTGGTGGATGAGAGAAGCTCTTGAAGCATTCATTAACCTGAAATGTGTCGCT 600
Query 755 GACGATGATGAAAGTGGGAACTGA 778
||||||||||||||||||||||||
Sbjct 601 GACGATGATGAAAGTGGGAACTGA 624
> Ahg908965 jgi|Araly1|908965|Al_scaffold_0002_2046
Length=585
Score = 377 bits (204), Expect = 7e-104
Identities = 411/506 (81%), Gaps = 33/506 (7%)
Strand=Plus/Plus
Query 255 CCG-CACAGATCGAGAAAGTTGTCTCTTTGGTCTCTCGTACCGGTCGCGATTTGCAGCGT 313
||| ||| ||| ||||||| ||||||||| |||||||||||||| || ||| |||| |||
Sbjct 91 CCGACACCGATTGAGAAAGATGTCTCTTTAGTCTCTCGTACCGGACGAGATCTGCAACGT 150
Query 314 TACGATCA-CGCTGGCTATCGTCAAGTCGTCGGATGTGTACCGTATAGATACAAGAAACA 372
||| | || ||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 151 TAC-AACACCGCAGGGTATCGTCAAGTCGTCGGATGTGTACCATATAGATACAAGAAACA 209
Query 373 AGAAGTCAATGGAGTTGAAACCCAAGTAATCCAAGTTCTTCTTG-TCAGTGCTC---A-A 427
| | ||||| || | || | | |||| ||| ||| | ||||| | | |
Sbjct 210 TG--G----TGGAG--GAGA---AA-T--T-GAAGTGCTT-TTGATAAGTGCACAGAAGA 253
Query 428 AAGGGCAAAGGAATGTTATTTCCAAAAGGAGGTTGGGAGACGGATGAATCAATGGAGGAA 487
||||| |||||||||||||| ||||||||||||||||||| ||||||||||| || |||
Sbjct 254 AAGGG-AAAGGAATGTTATTACCAAAAGGAGGTTGGGAGATTGATGAATCAATAGAAGAA 312
Query 488 GCTGCTTTGAGAGAGACGATCGAAGAAGCGGGTGTAACAGGAGAGCTCGAAGAA-AAGCT 546
|||||||| ||||||||||| |||||||| ||||| || || | || || ||| | ||
Sbjct 313 GCTGCTTTAAGAGAGACGATTGAAGAAGCTGGTGTTACGGGTCATCTTGAGGAATCA-CT 371
Query 547 TGGGAAATGGCAATACAAAAGCAAAAGACATAGC-ATAATTCACGATGGGTATATGTTTG 605
|||||||||||||||||||||||||||||||| | || ||||| ||||| || ||||||
Sbjct 372 TGGGAAATGGCAATACAAAAGCAAAAGACATA-CTATGATTCATGATGGTTACATGTTTC 430
Query 606 CTTTGCTTGTCAGTCAAGAGTTCGAGCGATGGCCTGAGGCGGAAATGAGACAACGCAGAT 665
|||||||||| |||||| |||| ||||| |||||||| || || || |||||||| | ||
Sbjct 431 CTTTGCTTGTTAGTCAACAGTTTGAGCGGTGGCCTGAAGCTGACATTAGACAACGTAAAT 490
Query 666 GGGTAAGTTTGGATGAAGCAAGAGAAGTA-TGTCAGAATTGGTGGATGAGAGAAGCTCTT 724
|||| |||| |||||| | || || |||||||||| |||||||||||||||| ||
Sbjct 491 GGGTTTCTTTGTCTGAAGCGATTGA-GTTGTGTCAGAATTCGTGGATGAGAGAAGCT-TT 548
Query 725 G-AAGCATTCATTAACCTGAAATGTC 749
| |||| || ||||||| ||||||||
Sbjct 549 GGAAGCTTTTATTAACCGGAAATGTC 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5