BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18330.2
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472050 jgi|Araly1|472050|fgenesh2_kg.1__2004__AT1G18330.2 1836 0.0
> Ahg472050 jgi|Araly1|472050|fgenesh2_kg.1__2004__AT1G18330.2
Length=1577
Score = 1836 bits (994), Expect = 0.0
Identities = 1263/1387 (91%), Gaps = 41/1387 (3%)
Strand=Plus/Plus
Query 280 ATTAATCAGCTTTATGCTCTGTTTTGTTCGCTTTCAGGCTGGTTTTGTGAGAATTATAGT 339
|||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 198 ATTAATCAGCTTTATGCTTTGTTTTGTTCGGTTTCAGGCTGGATTTGTGAGAATTACCGT 257
Query 340 TGCAGCAAGAAAGCGTTTCAGATATT-TTT--TAATGGCCGCTGAGGATCGAAGTGAGGA 396
|||||||||||||| ||| ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 258 TGCAGCAAGAAAGCTTTTTAGATATTGTTTAATAATGGCCGCTGAGGATCGAAGTGAGGA 317
Query 397 ACTAAGCAGCAATGTAGAAAATGGAAGTTGCAATTCCAATGAAGGAATTAATCCTGAAAC 456
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 318 GCTAAGCAGCAATGTAGAAAATGGAAGTTGCAATTCCAATGAAGGAACAAATCCTGAAAC 377
Query 457 CAGCAGTCATTGGATTGAAAACGTTGTCAAGGTTAGGAAACCGTACACAGTAACTAAGCA 516
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 CAGTAGTCATTGGATTGAAAACGTTGTCAAGGTTAGGAAACCGTACACAGTAACTAAGCA 437
Query 517 GAGAGAGAAGTGGAGTGAGGAAGAGCATGATAGGTTTCTTGAAGCTATCAAGCTTTATGG 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 GAGAGAGAAGTGGAGTGAGGAAGAGCATGATAGGTTTCTTGAAGCTATCAAGCTTTATGG 497
Query 577 TCGTGGTTGGCGTCAAATCCAAGAACACATAGGTACAAAAACCGCTGTACAGATACGAAG 636
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 498 TCGTGGTTGGCGTCATATCCAAGAACACATAGGTACGAAAACCGCTGTACAGATACGAAG 557
Query 637 CCATGCTCAAAAGTTCTTCTCCAAGATGGCTCAGGAAGCTGAC-AGTAGAAGTGAAGGAT 695
||||||||| ||||| ||||||||||||||||||||| ||||| | |||||||||||| |
Sbjct 558 CCATGCTCAGAAGTTTTTCTCCAAGATGGCTCAGGAACCTGACTA-TAGAAGTGAAGGGT 616
Query 696 CGGTTAAAGCGATTGTGATCCCGCCTCCTCGTCCAAAGAGAAAACCGGCACATCCTTATC 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 CGGTTAAAGCGATTGTGATCCCGCCTCCTCGTCCAAAGAGAAAACCGGCACATCCTTATC 676
Query 756 CTCGGAAATCGCCTGTTCCATATACTCAGTCTCCTCCACCAAATTTGTCAGCTATGGAGA 815
| ||||||||||||||||| ||| ||||||||||| || |||||||||||||||||||||
Sbjct 677 CCCGGAAATCGCCTGTTCCGTATTCTCAGTCTCCTTCATCAAATTTGTCAGCTATGGAGA 736
Query 816 AAGGAACCAAGTCTCCAACCTCAGTGTTATCATCGTTTGGTTCAGAGGATCAAGTCAATA 875
||||| ||||||||||||| ||||| | ||||| |||| ||||||||||||| ||||||
Sbjct 737 AAGGAGCCAAGTCTCCAACTTCAGTCCTGTCATCATTTGCTTCAGAGGATCAAATCAATA 796
Query 876 GATGCTCTTCGCCTAATTCGTGTACCAGTGACATCCAATCCATTGGTGCAACTTCCATTG 935
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 797 GATGCTCTTCGCCTAATTCGTGTACCAGTGACATCCAATCCATTGGTGGAACTTCCATTG 856
Query 936 ATAAAAAGAATAACTACACAACATCCAAGCAA-CCTTTCAAAGATGATTCTGACATTGGT 994
||||||||||| |||| ||||||||||||||| |||| |||||| |||||||||||||||
Sbjct 857 ATAAAAAGAATGACTATACAACATCCAAGCAATCCTT-CAAAGAGGATTCTGACATTGGT 915
Query 995 TCAACACCCATTTCAAGCATTACTCTTTTCGGGAAGATTGTCCTTGTCGCGGAAGAATCT 1054
||||||||||| ||||||||||| ||||| ||||||||||||||||||| || |||||||
Sbjct 916 TCAACACCCATGTCAAGCATTACCCTTTTTGGGAAGATTGTCCTTGTCGTGGCAGAATCT 975
Query 1055 CA---CAAACCATCCTCTTACA-A--TGATGATGATCTTAAA-CAAATGAC-GTGTCAGG 1106
|| ||||||||||||||||| | ||||||||||| |||| ||| |||| | |||||
Sbjct 976 CATGACAAACCATCCTCTTACAGAGATGATGATGATCCTAAATCAA-TGACAGA-TCAGG 1033
Query 1107 AGAATCACTACTCAGGGAT---G----CTAG-TTG-A------CACTAATTTATCTCTTG 1151
||||||||||||||||||| | |||| ||| | |||||||||||||||||
Sbjct 1034 AGAATCACTACTCAGGGATCAAGAATTCTAGCTTGCATATTGACACTAATTTATCTCTTG 1093
Query 1152 GTGTATGGGAAACGTTTTGTACTGGTTCTAATGCATTTGGCTCGGTTACAGAAGCATCTG 1211
| ||||||||||||| |||||| ||||||||||| |||||||| |||||||||| || |
Sbjct 1094 GGGTATGGGAAACGTCTTGTACCGGTTCTAATGCCTTTGGCTCAGTTACAGAAGTGTCAG 1153
Query 1212 AGAACTTGGAGAAAAGTGCAGAGCCGATAAGTTCTTCATGGAAACGGTTAAGCTCCTTAG 1271
||||||||||||| ||||||||||||||||||| ||||||||||| ||| | |||| | |
Sbjct 1154 AGAACTTGGAGAAGAGTGCAGAGCCGATAAGTTGTTCATGGAAACAGTTGACCTCCGTGG 1213
Query 1272 AAAAACAAGGATCTTGTAATCCTGTAAATGCAAGTGGGTTCAGGCCATACAAGAGATGCC 1331
||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1214 AAAAACAAGGATCATGTAATCCTGCAACTGCAAGTGGGTTCAGGCCATACAAGAGATGCC 1273
Query 1332 TATCAGAAAGAGAAGTAACATCATCATTGACGCTGGTAGCTTCAGATGAAAAGAAAAGCC 1391
|||||||||||||||| || |||||||| | |||||||||||||| ||| |||||||||
Sbjct 1274 TATCAGAAAGAGAAGTTACTTCATCATTCTCACTGGTAGCTTCAGAAGAACAGAAAAGCC 1333
Query 1392 AAAGA-G--CACGTATATGCTAGTTTTAGCCATTGTACAGTTTGGAGTCAATTTTGATGA 1448
||||| | |||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1334 AAAGAAGAGCACGTATATGCTAGTTTTAGCCATTGTACAGTTTGGGGTCACTTTTGATGA 1393
Query 1449 TCCGTGAACATTGTTTTAGCCATTTGCTGGGTGACTTGGATCATAGCATTCCACGAACCA 1508
| ||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1394 TTCGTCAACATTGTTTTAGCCATT-GCTGGATGACTTGGATCATAACATTCCACGAACCA 1452
Query 1509 AATCCTAAATCCGAGTTGGTAAGTGGTTTT-ACTTGTCCGCCACATGTAATTCTTGTAAT 1567
|||| ||| ||||| |||| ||||| |||| ||||||| |||||||||||||||||||||
Sbjct 1453 AATCTTAA-TCCGAATTGGCAAGTGATTTTTACTTGTCTGCCACATGTAATTCTTGTAAT 1511
Query 1568 GAAGTTTCTCCTG-CTGTCTCACGTTAAGAAGACACTTCt-ttttttCTTCATATACAAA 1625
||||||||| || ||||||||| |||| |||||| |||| |||||||| ||||||||||
Sbjct 1512 GAAGTTTCTG-TGGCTGTCTCACATTAAAAAGACAGTTCTGTTTTTTCTCCATATACAAA 1570
Query 1626 TCAGTTT 1632
| |||||
Sbjct 1571 TTAGTTT 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61325294450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5