BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18335.1
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911646 jgi|Araly1|911646|Al_scaffold_0001_1900 1170 0.0
> Ahg911646 jgi|Araly1|911646|Al_scaffold_0001_1900
Length=729
Score = 1170 bits (633), Expect = 0.0
Identities = 699/731 (96%), Gaps = 4/731 (1%)
Strand=Plus/Plus
Query 82 ATGGATTTGAAGAAACGGCGAAAGATTTTGGAGAAGAAAAAGACGATTCATGACCTTATA 141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTTGAAGAAACGGCGAAAGATTTTGGAGAAGAAAAAGACGATTCATGACCTTATC 60
Query 142 AAAAGAGCTTCTTCCATTGACGATCCTCTTTCTCCGTTTGATTCTTTCCGCCGTTACCGA 201
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACGAGCTTCTTCCATCGACGATCCTCTTTCTCCGTTTGATTCTTTCCGCCGTTACCGA 120
Query 202 AGAAACGACTTATCTTTGTACCTGGAATCTGGCCGTGGAGATAGACTTTCCTCGTCTGTG 261
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 AGAAACGACTTATCTTTGTACCTGGAATCTGGCCATGGAGATAGACTTTCCTCGTCTGTG 180
Query 262 AAACA-TCACATTCAAAAACTCTTGAAGACGAACATGGAAGGGTTCTATGGGTCTGATTG 320
||||| | |||||| ||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 181 AAACAAT-ACATTCGAAATCTCTTGAAGACAAACATGGAAGGGTTTTATGGGTCTGATTG 239
Query 321 GCCTATACAAGCAAAGGTGAAGCGTAAGGAGATGTCTTCCGCTGATGCACATTATATCTT 380
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 240 GCCTATACAAGCAAAGGTGAAGCGCAAGGAGATGTCTTCCGCAGACGCACATTATATCTT 299
Query 381 TGTGCGTGAGCTGCGTTTTGGTAAAGCCTATGAGACATCTACTCAAAGAACTTGCATGGA 440
||||||||||||||||||||||||||||||||| | |||||||| |||| ||||||||||
Sbjct 300 TGTGCGTGAGCTGCGTTTTGGTAAAGCCTATGAAATATCTACTCGAAGAGCTTGCATGGA 359
Query 441 AGGGTGTAATCAGATAGCTGGATTTGTGCATTACCGGTTTATTTTAGAGGAAGAGATACC 500
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 AGAGTGTAATCAGATAGCTGGATTTGTGCATTACCGGTTTACTTTAGAGGAAGAGATACC 419
Query 501 TGTCCTTTATGTGTATGAAATACAGCTGGAATCCCGGGTTCAAGGAAAGGGACTAGGAGA 560
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 TGTCCTTTATGTGTATGAAATACAGCTGGAATCCCGAGTTCAAGGAAAGGGACTAGGAGA 479
Query 561 ATTTTTAATGCAGTTGATTGAGCTCATTGCTTCTAAGAATCGGATGAGTGCGATCGTGCT 620
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 480 ATTTTTAATGCAGTTGATTGAGCTCATTGCTTCTAAGAATCGGATGAGTGCTATTGTGCT 539
Query 621 AACTGTTCTAACATCTAATGCATTGGCAATGACTTTCTACATGAGCA-AGTTAGGATACA 679
||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 540 AACTGTTCTAACATCTAATGCATTGGCAATGACTTTCTACATGAGCATACT-AGGATACA 598
Query 680 GAATATCAAGCATTTCTCCCTCAAAAGCTAATCTTCCGACTCTCTCGGTGAAGTATGAGA 739
|||||||||||||||| ||||| |||||||||||||||||| |||||| |||||||||||
Sbjct 599 GAATATCAAGCATTTCGCCCTCGAAAGCTAATCTTCCGACTTTCTCGGCGAAGTATGAGA 658
Query 740 TACTTTGCAAAACTTTTGATTCCGAAGCTAAATCTGTGTTGGAGAATGATGAAGAACCTA 799
||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 659 TACTTTGCAAAACATTTGATTCCGAAGCTAAATTTGTGTTGGAGAATGACGAAGAACCTA 718
Query 800 CCAAAGATTGA 810
|||||||||||
Sbjct 719 CCAAAGATTGA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41439610779
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5