BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18335.1 Length=1112 Score E Sequences producing significant alignments: (Bits) Value Ahg911646 jgi|Araly1|911646|Al_scaffold_0001_1900 1170 0.0 > Ahg911646 jgi|Araly1|911646|Al_scaffold_0001_1900 Length=729 Score = 1170 bits (633), Expect = 0.0 Identities = 699/731 (96%), Gaps = 4/731 (1%) Strand=Plus/Plus Query 82 ATGGATTTGAAGAAACGGCGAAAGATTTTGGAGAAGAAAAAGACGATTCATGACCTTATA 141 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATTTGAAGAAACGGCGAAAGATTTTGGAGAAGAAAAAGACGATTCATGACCTTATC 60 Query 142 AAAAGAGCTTCTTCCATTGACGATCCTCTTTCTCCGTTTGATTCTTTCCGCCGTTACCGA 201 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAACGAGCTTCTTCCATCGACGATCCTCTTTCTCCGTTTGATTCTTTCCGCCGTTACCGA 120 Query 202 AGAAACGACTTATCTTTGTACCTGGAATCTGGCCGTGGAGATAGACTTTCCTCGTCTGTG 261 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 121 AGAAACGACTTATCTTTGTACCTGGAATCTGGCCATGGAGATAGACTTTCCTCGTCTGTG 180 Query 262 AAACA-TCACATTCAAAAACTCTTGAAGACGAACATGGAAGGGTTCTATGGGTCTGATTG 320 ||||| | |||||| ||| ||||||||||| |||||||||||||| |||||||||||||| Sbjct 181 AAACAAT-ACATTCGAAATCTCTTGAAGACAAACATGGAAGGGTTTTATGGGTCTGATTG 239 Query 321 GCCTATACAAGCAAAGGTGAAGCGTAAGGAGATGTCTTCCGCTGATGCACATTATATCTT 380 |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| Sbjct 240 GCCTATACAAGCAAAGGTGAAGCGCAAGGAGATGTCTTCCGCAGACGCACATTATATCTT 299 Query 381 TGTGCGTGAGCTGCGTTTTGGTAAAGCCTATGAGACATCTACTCAAAGAACTTGCATGGA 440 ||||||||||||||||||||||||||||||||| | |||||||| |||| |||||||||| Sbjct 300 TGTGCGTGAGCTGCGTTTTGGTAAAGCCTATGAAATATCTACTCGAAGAGCTTGCATGGA 359 Query 441 AGGGTGTAATCAGATAGCTGGATTTGTGCATTACCGGTTTATTTTAGAGGAAGAGATACC 500 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 360 AGAGTGTAATCAGATAGCTGGATTTGTGCATTACCGGTTTACTTTAGAGGAAGAGATACC 419 Query 501 TGTCCTTTATGTGTATGAAATACAGCTGGAATCCCGGGTTCAAGGAAAGGGACTAGGAGA 560 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 420 TGTCCTTTATGTGTATGAAATACAGCTGGAATCCCGAGTTCAAGGAAAGGGACTAGGAGA 479 Query 561 ATTTTTAATGCAGTTGATTGAGCTCATTGCTTCTAAGAATCGGATGAGTGCGATCGTGCT 620 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 480 ATTTTTAATGCAGTTGATTGAGCTCATTGCTTCTAAGAATCGGATGAGTGCTATTGTGCT 539 Query 621 AACTGTTCTAACATCTAATGCATTGGCAATGACTTTCTACATGAGCA-AGTTAGGATACA 679 ||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| Sbjct 540 AACTGTTCTAACATCTAATGCATTGGCAATGACTTTCTACATGAGCATACT-AGGATACA 598 Query 680 GAATATCAAGCATTTCTCCCTCAAAAGCTAATCTTCCGACTCTCTCGGTGAAGTATGAGA 739 |||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||| Sbjct 599 GAATATCAAGCATTTCGCCCTCGAAAGCTAATCTTCCGACTTTCTCGGCGAAGTATGAGA 658 Query 740 TACTTTGCAAAACTTTTGATTCCGAAGCTAAATCTGTGTTGGAGAATGATGAAGAACCTA 799 ||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 659 TACTTTGCAAAACATTTGATTCCGAAGCTAAATTTGTGTTGGAGAATGACGAAGAACCTA 718 Query 800 CCAAAGATTGA 810 ||||||||||| Sbjct 719 CCAAAGATTGA 729 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41439610779 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5