BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18340.1
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472054 jgi|Araly1|472054|fgenesh2_kg.1__2008__AT1G18340.1 1821 0.0
> Ahg472054 jgi|Araly1|472054|fgenesh2_kg.1__2008__AT1G18340.1
Length=1169
Score = 1821 bits (986), Expect = 0.0
Identities = 1110/1170 (95%), Gaps = 8/1170 (1%)
Strand=Plus/Plus
Query 41 GTTCGTAATCGGAAAACTCAAAGACCTGTTGTGAAGATATAT-TGGAGAAGaaaaaaaaa 99
||||||||||||||||||||||||| |||||||||||||||| || ||||| || ||||
Sbjct 1 GTTCGTAATCGGAAAACTCAAAGACTTGTTGTGAAGATATATATGAAGAAG-AACAAAAG 59
Query 100 aCGATTTCCCGGCACTGAAATAGCATTATCAGATCTCGTTCCCACCGGGAAGATTTCCCG 159
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 60 ACGATTTCCCGGCACTGAAATAGCATTATCGGATCTCGTTCTCACCGGGAAGATTTCCCG 119
Query 160 GCACACTGAAATTCTGACTTGGAATCGTCTGTG-AAACTATGCCTGCCATTGCTTCTAAG 218
||||||||||||||||| ||||| || |||||| ||||||||||| || ||| |||||||
Sbjct 120 GCACACTGAAATTCTGAGTTGGATTCTTCTGTGAAAACTATGCCTTCCGTTGTTTCTAAG 179
Query 219 CAGTATTCAGACGATGTTAGTCTTCTAGTTTTGTTGCTTGATACGAATCCTCTTTTCTGG 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAGTATTCAGACGATGTTAGTCTTCTAGTTTTGTTGCTTGATACGAATCCTCTTTTCTGG 239
Query 279 AGCACTACATCGATTACCTTCTCTCAGTTCCTTTCTCATGTGCTTGCGTTTCTTAATGCG 338
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 240 AGCACTACATCGATTACCTTCTCTCAATTCCTTTCTCATGTGCTTGCGTTTCTGAATGCA 299
Query 339 GTTTTGGGGTTAAATCAGTTGAACCAAGTTGTAGTTATAGCTACTGGATACAGTTCTTGT 398
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 GTTTTGGGCTTAAATCAGTTGAACCAAGTTGTAGTTATAGCTACTGGATACAGTTCCTGT 359
Query 399 GATTACATTTATGATTCGTCTTTGACATCAAATCATGGAAATTTCGAGAGCAATGGAACT 458
||||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 360 GATTACATTTATGATTCTTCTTTGACATCCAATCATGGAAATCTCGAGAGCAACGGAACT 419
Query 459 GGAATGCCTGCAATTTTTGGTTCTTTGCTTAAGAAATTGGAAGAGTTTGTTACCAAAGAT 518
|||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 420 GGAATGCCTGCACTTTTTGGTTCTTTGCTGAAGAAATTGGAAGATTTTGTTACAAAAGAT 479
Query 519 GAGGAGCTCAGCAAGGAGGAAGTGTCTGAGGATAGAATACCTTCTTGTCTCTTGTCAGGA 578
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GAGGAGCTCAGCAGGGAGGAAGTGTCTGAGGATAGAATACCTTCTTGTCTCTTGTCAGGA 539
Query 579 TCACTCTCCATGGCTCTTTGCTATATACAGAGGGTTTTCCGTTCTGGACATCTTCATCCC 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCACTCTCCATGGCTCTTTGCTATATACAGAGGGTTTTCCGTTCTGGACATCTTCATCCC 599
Query 639 CAGCCTCGGATTTTATGCTTGCAAGGTTCCCCAGATGGCCCGGAACAGTATGTTGCTGTT 698
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 600 CAGCCTCGGATTTTATGCTTGCAAGGTTCCCCAGATGGTCCGGAACAATATGTAGCTGTT 659
Query 699 ATGAACTCTATCTTCTCTGCCCAACGCTTGATGGTTCCCATTGATTCGTGTTACATAGGT 758
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 660 ATGAACTCTATCTTCTCTGCCCAACGCTTAATGGTTCCCATTGATTCATGTTACATAGGT 719
Query 759 GTACAGAACTCAGCATTTTTGCAGCAGGCATCTTATATAACTGGTGGTGTACATCATACA 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTACAGAACTCAGCATTTTTGCAGCAGGCATCTTATATAACTGGTGGTGTACATCATACA 779
Query 819 CCTAAACAGTTGGATGGGCTATTTCAATATCTAACGACAATCTTTGCAACCGATTTGCAC 878
|||||||||||||||||||| ||||| ||||||||||| || |||||||| || |||||
Sbjct 780 CCTAAACAGTTGGATGGGCTGTTTCAGTATCTAACGACGATTTTTGCAACTGACTTGCAT 839
Query 879 TCCCGCGGTTTTGTACAACTTCCTAAACCCATAGGTGTAGATTTTCGCGCATCGTGCTTT 938
|||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 840 TCCCGCAGTTTTGTACAACTTCCTAAACCCATTGGTGTTGATTTTCGCGCATCGTGCTTT 899
Query 939 TGCCACAAGAAGACAATAGATATGGGCTACATATGCTCAGTGTGTCTGTCCATTTTCTGT 998
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 900 TGCCACAAGAAGACAATAGATATGGGCTACATATGTTCAGTGTGTCTGTCCATTTTCTGT 959
Query 999 GAGCATCACAAGAAATGTTCAACCTGCGGGTCTGTATTTGGTCAGTCTAAACTTGATGAT 1058
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 960 GAGCATCACAAGAAATGTTCAACGTGCGGGTCTGTTTTTGGTCAGTCTAAACTTGATGAT 1019
Query 1059 GCTTCATCTGCCTCTGATAAGAAGAGAAAAGCTCCTAGTACCTAAAATCATCTTTTGTGC 1118
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCTTCATCTGTCTCTGATAAGAAGAGAAAAGCTCCTAGTACCTAAAATCATCTTTTGTGC 1079
Query 1119 CAGAGAGAAACTGCAAACTTTGTTTAAT-TGTGTCTTTGCGTTCATTTTCGATAATTT-T 1176
|||||||||||| ||||||||||| ||| | | ||| ||||||||||| ||||||| | |
Sbjct 1080 CAGAGAGAAACTTCAAACTTTGTTCAATATTTTTCTATGCGTTCATTTACGATAATGTAT 1139
Query 1177 -TAT-A-CCATATATCAAAGTGAAATCAAT 1203
||| | |||||||||||||||||||||||
Sbjct 1140 GTATGAACCATATATCAAAGTGAAATCAAT 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014360819
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5