BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18350.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926721 jgi|Araly1|926721|scaffold_202282.1 617 4e-176
Ahg472055 jgi|Araly1|472055|fgenesh2_kg.1__2009__AT1G18350.1 562 2e-159
> Ahg926721 jgi|Araly1|926721|scaffold_202282.1
Length=980
Score = 617 bits (334), Expect = 4e-176
Identities = 664/821 (81%), Gaps = 31/821 (4%)
Strand=Plus/Plus
Query 147 AACGGAATCTCAGCTTCCGATGTCGAGAAACTCCACGTTCTCGGAAGAGG-AAGCAGCGG 205
||||||||||| || ||| |||| |||||| ||||||||||| | || || | ||||
Sbjct 145 AACGGAATCTCCGCCGGTGATCTCGATAAACTCAACGTTCTCGGATGCGGTAA-CGGCGG 203
Query 206 GATCGTATACAAAGTCCA-CCACAAAACCACGGGGGAGATATACGCTCTGAAATCAGTCA 264
||| || || ||||| || || |||||||| |||||| |||||| ||||| |||| |
Sbjct 204 GATTGTTTATAAAGT-CAGTCATAAAACCACATCGGAGATCTACGCTTTGAAAACAGTTA 262
Query 265 ACGGCGACAT-GAGTCCTG-CTTTCACAAGACAATTAG-CGCGCGAGATGGAGATCCTCC 321
|||||||||| || ||| | ||||||||| ||||| | ||| ||||||||||| ||||
Sbjct 263 ACGGCGACATGGA-TCC-GATTTTCACAAGGCAATT-GATGCGAGAGATGGAGATTCTCC 319
Query 322 GTCGCACGGATTCTCCTTATGTCGTCAGGTGTCAAGGGATCTTCGAGAAACCAATCGTCG 381
| || | ||||| || || ||||| | |||||| || |||||||||||||| ||||||
Sbjct 320 GCCGTATAGATTCGCCGTACGTCGTTAAGTGTCACGGAATCTTCGAGAAACCTGTCGTCG 379
Query 382 GAGAGGTTTCGATCCTCATGGAGTATATGGACGGTGGAAACCTAGAATCTCTCCGCGGCG 441
| || || ||||| || ||||||||||||||||| |||| ||||||||| || |||||||
Sbjct 380 GTGAAGTATCGATTCTAATGGAGTATATGGACGGCGGAACCCTAGAATCACTACGCGGCG 439
Query 442 CCGTTACGGAG-AAACAACTAGCGGGATTTTC-CCGCCAGATTTTGAAAGGTTTAAGTTA 499
||| |||||| ||| |||| || ||||| | | ||||| || ||||| ||||| ||
Sbjct 440 GCGTAACGGAGCAAA-AACTCGCCGGATTCGCTAAG-CAGATCTTAAAAGGATTAAGCTA 497
Query 500 TCTCCACTCACTCAAGATCGTTCA-CAGAGACATCAAACCTGCGAATCTAC-TCTTAAAC 557
| | ||| | || ||||||||||| | | || |||||||| |||||||| | || | ||
Sbjct 498 TTTACACGCTCTTAAGATCGTTCATC-GTGATATCAAACCGGCGAATCTGCTTC-TCAAT 555
Query 558 TCGAGAAACGAAGTTAAAATCGCTGATTTTGGAGTGAGCAAAATCATTAC-CCGATCGTT 616
|||| |||||||||||||||||||||||||||||| || || ||| ||| |||||| ||
Sbjct 556 TCGAAAAACGAAGTTAAAATCGCTGATTTTGGAGTTAGTAAGATC-TTAGTCCGATCATT 614
Query 617 AGATTAC-TGCAATTCCTACGTCGGCACTTGCGCTTACATGAGCCCGGAGAGATTTGACT 675
||||| | || ||||| || || || ||||| ||||| ||||| |||||||| ||||| |
Sbjct 615 AGATT-CGTGTAATTCGTATGTTGGTACTTGTGCTTATATGAGTCCGGAGAGGTTTGATT 673
Query 676 CTGC--CG-CCGGAGAAAACTCCGATGTTTACGCAGGCGATATCTGGAGTTTCGGAGTGA 732
| | | |||| | || || ||| | ||||| || |||||||||||||||||| |||
Sbjct 674 CCGAATCTTCCGGTGGAAGTTCTGATATCTACGCCGGAGATATCTGGAGTTTCGGATTGA 733
Query 733 TGATACTTGAGCT-CTTCGTCGGACATTTTCCGTTGCTTCCTCAGGGACAGAGACCTGAC 791
|||| |||||||| || ||| || ||||||||||| ||||| | ||||||||||||||||
Sbjct 734 TGATGCTTGAGCTTCT-CGTTGGTCATTTTCCGTTACTTCCGCCGGGACAGAGACCTGAC 792
Query 792 TGGGCGACGTTAATGTGCGTCG-TGTGCTTT-GGAGAACCACCGCGTGCGCCGGAAGGAT 849
||||| ||||||||||||| || |||| ||| |||||||| ||||| |||||||| ||||
Sbjct 793 TGGGCTACGTTAATGTGCG-CGGTGTG-TTTCGGAGAACCGCCGCGAGCGCCGGAGGGAT 850
Query 850 GTTCCGACGAGTTTAGGAGTTTTGTTGACTGTTGTCTCCGTAAAGAATCGAGTGAGAGGT 909
|||| || ||||||||||| || ||||| |||||||| |||||||| |||||| || | |
Sbjct 851 GTTCTGAAGAGTTTAGGAGCTTCGTTGAGTGTTGTCTACGTAAAGATTCGAGTAAGCGAT 910
Query 910 GGACGGCGTCGCAGCTTCTCGGTCACCCTTTTCTCCGTGAA 950
||||||||||||||||||| | ||| ||||||||||| |||
Sbjct 911 GGACGGCGTCGCAGCTTCTTGCTCATCCTTTTCTCCGGGAA 951
> Ahg472055 jgi|Araly1|472055|fgenesh2_kg.1__2009__AT1G18350.1
Length=833
Score = 562 bits (304), Expect = 2e-159
Identities = 424/479 (89%), Gaps = 20/479 (4%)
Strand=Plus/Plus
Query 36 ATGGCTCTTGTTCGTAAACGCCGTCAAATCAACCTCCGTCTCCCTGTCCCACCGCTCT-C 94
||||||||||||||| ||||||||| ||||||||||||||||||| | ||||| |||| |
Sbjct 1 ATGGCTCTTGTTCGTGAACGCCGTCGAATCAACCTCCGTCTCCCTCTTCCACCACTCTAC 60
Query 95 TGTTCACCTCCCCTGGTTCTCCTTTG---CCTCATCCACCG-C--C-C--CC-------- 137
| || ||||||||| |||||||||| ||||| || ||| | | | ||
Sbjct 61 -GATCGCCTCCCCTGTTTCTCCTTTGCCTCCTCAACCGCCGCCGTCACATCCAAATTGGA 119
Query 138 -GTCATCAACAACGGAATCTCAGCTTCCGATGTCGAGAAACTCCACGTTCTCGGAAGAGG 196
||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||
Sbjct 120 TGTCATCAACAATGGAATCTCCGCTTCCGATATCGAGAAACTCCACGTTCTCGGAAGCGG 179
Query 197 AAGCAGCGGGATCGTATACAAAGTCCACCACAAAACCACGGGGGAGATATACGCTCTGAA 256
|| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 AACCGGCGGGATCGTATACAAAGTCCACCACAAAACCACGGGGGAGCTATACGCTCTGAA 239
Query 257 ATCAGTCAACGGCGACATGAGTCCTGCTTTCACAAGACAATTAGCGCGCGAGATGGAGAT 316
| |||||||||| |||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 240 AACAGTCAACGGAGACATGAGTCCTACTTTCACAAGACAATTAACACGCGAGATGGAGAT 299
Query 317 CCTCCGTCGCACGGATTCTCCTTATGTCGTCAGGTGTCAAGGGATCTTCGAGAAACCAAT 376
||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||
Sbjct 300 CCTCCGTCGCACGGAATCTCCTTATATCGTCCGGTGTCACGGGATCTTCGAGAAACCAAT 359
Query 377 CGTCGGAGAGGTTTCGATCCTCATGGAGTATATGGACGGTGGAAACCTAGAATCTCTCCG 436
|| ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 CGCCGGCGAGGTTTCAATCCTCATGGAGTATATGGACGGCGGAAACCTAGAATCTCTCCG 419
Query 437 CGGCGCCGTTACGGAGAAACAACTAGCGGGATTTTCCCGCCAGATTTTGAAAGGTTTAA 495
||||||||| || ||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 420 CGGCGCCGTAACAGAGAAACAACTCGCTGGATTTTCCCGCCAGATTTTGAAAGGATTAA 478
Score = 486 bits (263), Expect = 1e-136
Identities = 333/364 (91%), Gaps = 16/364 (4%)
Strand=Plus/Plus
Query 659 CCCGGAGAGATTTGACT-C-T--GCCGCCGGAGAAAACTCCGATGTTTACGCAGGCGATA 714
||||||||||||||||| | | | ||||||||||||||||||||| |||||||||||||
Sbjct 479 CCCGGAGAGATTTGACTCCGTCCGTCGCCGGAGAAAACTCCGATGTATACGCAGGCGATA 538
Query 715 TCTGGAGTTTCGGAGTGATGATACTTGAGCTCTTCGTCGGACATTTTCCGTTGCTTCCTC 774
|||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 539 TCTGGAGTTTCGGATTGATGATGCTCGAGCTCTTCGTCGGACATTTTCCGTTGCTTCCTC 598
Query 775 AGGGACAGAGACCTGACTGGGCGACGTTAATGTGCGTCGTGTGCTTT-GGAGAACCACCG 833
|||||||||||||||| ||||||||| ||||||||| |||||| ||| ||||| ||||||
Sbjct 599 AGGGACAGAGACCTGATTGGGCGACGCTAATGTGCGCCGTGTG-TTTCGGAGAGCCACCG 657
Query 834 CGTGCGCCGGAAGGATGTTCCGACGAGTTTAGGAGTTTTGTTGACTGTTGTCTCCGTAAA 893
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 CGTACGCCGGAAGGATGTTCCGACGAGTTTAGGAGTTTTGTTGATTGTTGTCTCCGTAAA 717
Query 894 GAATCGAGTGAGAGGTGGACGGCGTCGCAGCTTCTCGGTCACCCTTTTCTCCGTGAAAGT 953
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 718 GAATCGAGTGAGAGGTGGACGGCGTCGCAGCTTCTCGGTCACTCTTTTCTCCGTGAA-GT 776
Query 954 CTTTAGATCCGACTGCTTGTGATATTACGGGTCTGGATATTTT--CCGGGTGACCCAAAT 1011
| |||| |||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct 777 -T------CCGATTGCTTGTGATGTTACGGGTCTGGATCTTTTTTCCGGGTGACCCAAAT 829
Query 1012 CGCA 1015
||||
Sbjct 830 CGCA 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5