BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18360.1
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920765 jgi|Araly1|920765|scaffold_102046.1 1770 0.0
Ahg926720 jgi|Araly1|926720|scaffold_202281.1 719 0.0
> Ahg920765 jgi|Araly1|920765|scaffold_102046.1
Length=1224
Score = 1770 bits (958), Expect = 0.0
Identities = 1048/1092 (96%), Gaps = 3/1092 (0%)
Strand=Plus/Plus
Query 285 TAAACCGGATTCAAAATCGAAATGATGTTCCGATTAGTGTCATAGCTACTCGACGATCAT 344
||||||||||||||| |||||||||| ||||||||||| || | ||||||||||||||||
Sbjct 112 TAAACCGGATTCAAATTCGAAATGATCTTCCGATTAGTATCGTTGCTACTCGACGATCAT 171
Query 345 CAATGTCGGTGGAGGCGTTTCCGATGAGGTTAAAATCATCAC---AGAAGAAGAGGAAGA 401
||||||||||||||||||| || | ||| |||||||| |||| |||||| ||||||||
Sbjct 172 CAATGTCGGTGGAGGCGTTGCCAACGAGATTAAAATCTTCACTGAAGAAGACGAGGAAGA 231
Query 402 TGAACATTGGTTGCGGTGTTTCCCCTTCTTCGCCGACGACGACGGTGGTAGATGAGGAAG 461
|||||| ||||||||||||||||||||||||||||| || |||||||| ||||| ||||
Sbjct 232 GGAACATCGGTTGCGGTGTTTCCCCTTCTTCGCCGACAACAACGGTGGTTGATGATGAAG 291
Query 462 TAGCCATTAGGCGGAAATTGGCAATGAGACGGGTTTTGGAGGATAACGGTGGCGATGGAA 521
| || |||| ||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 292 TGGCGGTTAGACGGAATTTGGCAATGAGGCGCGTTTTGGAGGATAACGGTGGCGATGGAA 351
Query 522 GCTCCGTCAGAGATTTCTCGCTATTCACGACCAAGAGAGGTGACACGTTGTTCACTCAGT 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GCTCCGTCAGAGATTTCTCGCTATTCACGACCAAGAGAGGTGACACGTTGTTCACTCAGT 411
Query 582 CATGGACTCCTGTTGACTCCGCTAAGAACAGGGGACTTGTTGTTCTGCTTCATGGTCTGA 641
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 412 CATGGACACCTGTTGACTCCGCTAAGAACAGGGGACTTGTTGTTCTGCTACATGGTCTGA 471
Query 642 ACGAACACAGTGGCAGGTATAGTGATTTTGCAAAGCAGCTAAATGTAAATGGATTCAAGG 701
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 472 ACGAACACAGTGGCAGGTATAGTGATTTTGCAAAGCAGCTAAATGTTAATGGATTCAAGG 531
Query 702 TCTATGGAATAGATTGGATCGGTCATGGTGGAAGCGATGGACTTCATGCTTACGTTCCTT 761
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 532 TCTATGGAATAGATTGGATCGGTCATGGTGGAAGCGATGGACTTCATGCTTACGTTGCTT 591
Query 762 CTCTTGATTATGCTGTCGCTGATTTGAAATCGTTTATTGAGAAGGTAATTGCGGAAAACC 821
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 592 CTCTTGATTATGCTGTCGCTGATTTGAAATCGTTTCTTGAGAAGGTAATTGCGGAAAACC 651
Query 822 CGGGATTGCCCTGTTTCTGCATTGGCCACTCAACAGGAGGAGCCATCATCTTAAAGGCTA 881
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 652 CGGGATTGCCCTGTTTCTGCATTGGCCACTCAACAGGAGGAGCCATAATCTTAAAGGCCA 711
Query 882 TGCTAGATGCAAAGATTGAAGCTCGAGTTTCAGGGATTGTGCTAACTTCACCCGCAGTTG 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TGCTAGATGCAAAGATTGAAGCTCGAGTTTCAGGGATTGTGCTAACTTCACCCGCAGTTG 771
Query 942 GAGTCCAACCAACTTATCCTATCTTCGGCGTAATTGCACCATTCCTCTCGTTCCTCATAC 1001
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 772 GAGTCCAACCAACTTATCCTATCTTCGGCGTAATTGCACCAGTCCTCTCGTTCCTCATAC 831
Query 1002 CGAGATATCAGTTAAGTGCTGCGAAAAAGAAAATAATGCCGGTTTCTCGTGACCCGGAAG 1061
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 832 CGAGATATCAGTTAAGTGCTGCAAAAAAGAAAATAATGCCGGTTTCTCGTGACCCGGAAG 891
Query 1062 CTCTATTGGCTAAATACTCTGACCCGCTAGTCTACACTGGATTTATCCGAGCAAGAACCG 1121
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 892 CTCTATTGGCTAAATACTCTGACCCACTAGTCTACACTGGATTTATCCGAGCAAGAACCG 951
Query 1122 GTAACGAGATCCTTAGACTTGGTGCTCATTTACTGCAGAATCTGAACAGAATCAAGGTTC 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GTAACGAGATCCTTAGACTTGGTGCTCATTTACTGCAGAATCTGAACAGAATCAAGGTTC 1011
Query 1182 CGTTTCTTGTGATGCACGGCACAGCTGATACAGTTACTGATCCTAAAGGTACTCAGAAGC 1241
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1012 CGTTTCTTGTGATGCACGGCACAGCTGATACAGTTACTGATCCTAAAGGTACCCAAAAGC 1071
Query 1242 TATACAATGAGGCTTCCTCATCCGATAAGTCGATCAAGCTGTACGACGGGTTGTTACACG 1301
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1072 TATACAACGAGGCTTCCTCGTCCGATAAGTCGATCAAGCTGTACGATGGGTTGTTACACG 1131
Query 1302 ATCTGCTCTTTGAACCAGAACGGGAAACTATAGCTGGAGTCATATTGGATTGGCTAAACC 1361
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1132 ATCTGCTCTTTGAACCAGAACGAGAAACTATCGCTGGAGTCATATTGGATTGGCTAAACC 1191
Query 1362 GGCGGGTTTAAA 1373
||||||||||||
Sbjct 1192 GGCGGGTTTAAA 1203
Score = 134 bits (72), Expect = 3e-30
Identities = 78/81 (96%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 204 TCTTTGAATTCTCTTTGTTTATGATCTGTTCAAGTAAAGGAACGGTCGTAATTGCTACTA 263
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TCTTTGAATTCTCTTTGTTTATGATCTGTTCAAGTAAAGGAACGGTCGTATTTGCTACTG 60
Query 264 GAAGCTCATTTCCCAGATTAC 284
||| |||||||||||||||||
Sbjct 61 GAAACTCATTTCCCAGATTAC 81
> Ahg926720 jgi|Araly1|926720|scaffold_202281.1
Length=1439
Score = 719 bits (389), Expect = 0.0
Identities = 765/944 (81%), Gaps = 35/944 (4%)
Strand=Plus/Plus
Query 444 CGGTGGTAGATGAGGAAGTAGCCATTAGGCG-GAAATTGGC-AATGAGACGGGTTTTGGA 501
||||||| |||||||| || || || | || | | |||| | | || || || |||||
Sbjct 494 CGGTGGTGGATGAGGAGGTTGCTGTTCGACGTG-AGCTGGCGATTAAG-CGAGTATTGGA 551
Query 502 GGAT-AACGGTGGCGATGGAAGCTCCGTCAGAGATT-TCTCGCTATTCACGACCAAGAGA 559
|||| || || ||||||||||||||||||||||||| | ||||| |||||||| ||||||
Sbjct 552 GGATGAA-GGCGGCGATGGAAGCTCCGTCAGAGATTAT-TCGCTTTTCACGACGAAGAGA 609
Query 560 GGTGACACGTTGTTCACTCAGTCATGGACTCCTGTTGACTCCGCTAAGAACAGGGGACTT 619
||||| |||||||| || ||||||||| | ||| || ||| | || ||||||| |||
Sbjct 610 GGTGATACGTTGTTTACACAGTCATGGTCACCTCTT---TCCCCAAATCACAGGGGGCTT 666
Query 620 GTTGTTCTGCTTCATGG-TCTGAACGAACACAGTGGCAGGTATAGTGATTTTGCAAAGCA 678
|||||||||| ||||| | | ||||| || |||||||||||||||||||||||||||||
Sbjct 667 ATTGTTCTGCTACATGGAT-TAAACGAGCATAGTGGCAGGTATAGTGATTTTGCAAAGCA 725
Query 679 GCTAAATG-TAAATGGATTCAAGGTCTATGGAATAGATTGGATCGGTCATGGTGGAAGCG 737
||| |||| ||| ||| ||||||||||||||||| || |||||||||||||| ||||| |
Sbjct 726 GCTTAATGCTAA-TGGGTTCAAGGTCTATGGAATTGACTGGATCGGTCATGGCGGAAGTG 784
Query 738 ATGGACTTCATGCTTACGTTCCTTCTCTTGATTATGCTGTCGCTGATTTGAAATCGTTTA 797
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||
Sbjct 785 ATGGACTTCATGCTTACGTTCCTTCCCTTGATTACGCTGTCGCAGATTTGAAATCATTTC 844
Query 798 TTGAGAAGGTAATTG-CGGAAAACCCGGGATTGCCCTGTTTCTGCATTGGCCACTCAACA 856
|||| |||||| || | || || || ||| | |||||||||||| |||| |||||||||
Sbjct 845 TTGAAAAGGTA-TTCACAGAGAATCCAGGACTCCCCTGTTTCTGCTTTGGACACTCAACA 903
Query 857 GGAGGAGCCATCAT-CTTAAAGGCTATGCTAGATGCAAAGATTGAAGCTCGAGTTTCAGG 915
|| ||||| ||||| || || ||||||||| ||| ||||||||||| |||||||||||||
Sbjct 904 GGTGGAGCAATCATTCTCAA-GGCTATGCTGGATCCAAAGATTGAATCTCGAGTTTCAGG 962
Query 916 GATTGTGCTAACTTCACCCGCAGTTGGAGTCCAACCAACTTATCCTATCTTCGGC-GTAA 974
||||| | |||||||| || |||||||| |||||| | |||| ||||||| | ||
Sbjct 963 CATTGTATTGACTTCACCAGCTGTTGGAGTTCAACCATCCCATCCAATCTTCG-CAGTTC 1021
Query 975 TTGCACCATTCCTCTCGTTCCTCATACCGAGATATCAGTTAAGTGCTGCGAAA-AAGAAA 1033
|||| ||| || | |||||||| | || || || || | ||||| || ||| ||||||
Sbjct 1022 TTGCTCCAATCATGGCGTTCCTCCTGCCCAGGTACCAAATCAGTGCAGC-AAACAAGAAA 1080
Query 1034 ATAATGCCGGTTTCTCGTGACCCGGAAGCTCT-ATTGGCTAAATACTCTGACCCGCTAGT 1092
|||||||||||||||||| || | |||||| || | | ||||||||||||||| ||||
Sbjct 1081 GGAATGCCGGTTTCTCGTGATCCAGCAGCTCTTATCGCC-AAATACTCTGACCCGTTAGT 1139
Query 1093 CTACACTGGATTTATCCGAGC-AAGAACCGG-TAACGAGATCCTTAGACTTGGTGCTCAT 1150
|| ||| |||| ||||| | || |||||| || ||||||||||||| | ||||||
Sbjct 1140 CTTCACCGGATCCATCCGGGTTAA-AACCGGATA-CGAGATCCTTAGAATCACTGCTCAC 1197
Query 1151 TTACTGCAGAATCTGAACAGAA-TCAAGGTTCCGTTTCTTGTGATGCACGGCACAG-CTG 1208
|| | ||||| ||||||| || | || ||||| ||||||||||||||||| | || | |
Sbjct 1198 TTGCAACAGAACCTGAACA-AAGTGAAAGTTCCTTTTCTTGTGATGCACGGTAGAGAC-G 1255
Query 1209 ATACAGTTACTGATCCTAAAGGTACTCAGAAGCTATACAATGAGGCTTCCTCATCCGATA 1268
| ||||| || |||||||| | | | ||||||| || | || |||||||| || || |
Sbjct 1256 ACACAGTGACCGATCCTAACGCTTCAAAGAAGCTCTATGAGGAAGCTTCCTCGTCGGACA 1315
Query 1269 AGTCGATCAAGCTGTACGACGGGTTGTTACACGATCTGCTCTTTGAACCAGAACGGGAAA 1328
| || |||||||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||
Sbjct 1316 AATCAATCAAGCTCTACGATGGGTTATTGCACGATCTTCTCTTCGAACCCGAACGAGAAA 1375
Query 1329 -CTATAGCTGGAGTCATATTGGATTGGCTAAACCGGCGGGTTTA 1371
| || ||||||| |||||| ||||||||||||| |||||||||
Sbjct 1376 TC-ATCGCTGGAGCCATATTAGATTGGCTAAACCAGCGGGTTTA 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62734633515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5