BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18390.2
Length=2128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312791 jgi|Araly1|312791|fgenesh1_pm.C_scaffold_1001571 1803 0.0
> Ahg312791 jgi|Araly1|312791|fgenesh1_pm.C_scaffold_1001571
Length=3432
Score = 1803 bits (976), Expect = 0.0
Identities = 1075/1124 (96%), Gaps = 1/1124 (0%)
Strand=Plus/Plus
Query 838 ATAGCTGCGAGCATATTTTGGTATGTATACCATCGTAGAAAAACAAAAAGTTACAGAAAT 897
|||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| |
Sbjct 1513 ATAGCTGCGAGCATCTTTTGGTATGTGTATCATCGTAGAAAAACAAAAAGTTACAGAACT 1572
Query 898 TCTTCAGCATTGCTTCCAAGAAACATCTCATCAGATCCATCTGCAAAGTCTTTTGACATC 957
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1573 TCTTCAGCATTGCTTCCAAGAAACATCTCATCAGATCCATCTTCAAAGTCTTTTGACGTT 1632
Query 958 GAGAAAGCAGAGGAATTATTAGTCGGAGTTCATATTTTCTCTTACGAAGAACTTGAAGAA 1017
||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1633 GAGAAAGCAGAGGAACTATTAGTCGGAGTTCATCTTTTCTCTTACGAAGAGCTTGAAGAA 1692
Query 1018 GCCACTAATAACTTCGACCCATCTAAAGAACTCGGTGATGGAGGCTTTGGTACTGTCTAT 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1693 GCCACTAATAACTTCGACCCATCTAAAGAACTCGGTGATGGAGGCTTTGGTACTGTTTAT 1752
Query 1078 TACGGTAAGCTTAAAGATGGACGAAGCGTAGCCGTTAAACGGTTATACGATAACAACTTC 1137
||||| ||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 1753 TACGGCAAGCTTAAAGATGGAAGAAGCGTAGCTGTGAAACGGTTATACGATAACAACTTC 1812
Query 1138 AAAAGAGCAGAGCAATTCAGGAATGAAGTTGAGATCTTAACGGGTTTACGCCATCCAAAC 1197
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1813 AAAAGAGCAGAGCAATTCAGGAACGAAGTTGAGATCTTAACGGGTTTACGTCATCCAAAC 1872
Query 1198 CTCGTGGCTCTCTTTGGATGCTCCTCAAAACAGAGCCGGGACTTACTGCTAGTGTATGAG 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 CTCGTGGCTCTCTTTGGATGCTCCTCAAAACAGAGCCGGGACTTACTGCTAGTGTATGAG 1932
Query 1258 TATGTTGCAAACGGCACGTTAGCTGATCATCTACATGGTCCACAGGCAAACCCTAGCTCA 1317
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1933 TATGTTGCAAACGGCACGTTAGCTGATCATCTACATGGTCCACAGGCTAACCCGAGCTCA 1992
Query 1318 CTTCCTTGGTCTATTCGGCTCAAAATCGCTGTTGAAACTGCCTCTGCCTTGAAGTATCTC 1377
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1993 CTTCCTTGGTCTATTCGGCTCAAGATCGCTGTTGAAACTGCATCTGCCTTGAAGTATCTC 2052
Query 1378 CACGCCTCCAAGATCATCCACCGTGATGTTAAATCCAACAACATCCTTCTCGACCAAAAC 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2053 CACGCCTCCAAGATCATCCACCGTGATGTTAAATCCAACAACATCCTTCTCGACCAGAAC 2112
Query 1438 TTCAATGTCAAGGTTGCGGATTTTGGACTCTCTAGACTGTTTCCTATGGATAAAACGCAC 1497
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 2113 TTCAATGTCAAGGTTGCGGATTTTGGACTCTCTAGATTGTTTCCTATGGATAGAACGCAT 2172
Query 1498 GTATCTACCGCTCCACAAGGAACTCCGGGATATGTCGACCCGGATTACCACTTATGCTAT 1557
||||| |||||||||||||||||||| || || || ||||||||||||||| |||| |||
Sbjct 2173 GTATCAACCGCTCCACAAGGAACTCCAGGCTACGTAGACCCGGATTACCACCTATGTTAT 2232
Query 1558 CAACTCTCAAACAAAAGCGACGTGTACAGCTTTGCGGTAGTGTTAATGGAGCTTATCTCT 1617
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2233 CAACTCTCCAACAAAAGCGACGTGTACAGCTTTGCAGTAGTGTTAATGGAGCTTATCTCT 2292
Query 1618 TCACTTCCAGCAGTCGACATCACAAGACCGCGCCAAGAGATCAACCTCTCGAACATGGCA 1677
|| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 2293 TCGCTTCCAGCAGTCGACATCACAAGACCGCGCCACGAGATCAACCTTTCAAACATGGCA 2352
Query 1678 GTCGTTAAAATCCAGAACCACGAGCTCCGCGACATGGTGGATCCGTCACTTGGGTTTGAC 1737
||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 2353 GTCGTTAAAATCCAGAATCACGAGCTCCGAGACATGGTGGATCCATCACTCGGGTTTGAC 2412
Query 1738 ACGGATACAAGAGTGAGACAGACGGTGATCGCTGTCGCTGAGCTGGCGTTCCAATGCTTG 1797
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2413 ACGGATACAAGAGTGAGACAGACGGTGATCGCAGTCGCTGAGCTGGCGTTCCAATGCTTA 2472
Query 1798 CAGTCGGATAAAGATCTTAGGCCATGTATGTCGCACGTGCAGGATACGTTGACGAGGATA 1857
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 2473 CAGTCGGATAAAGATCTTAGGCCATGTATGTCACACGTGCAGGATACGCTGACGAGGATA 2532
Query 1858 CAGAACAATGGATTTGGTTCGGAAATGGATGTTGTAGATGTGAACAAGAGTGGACCGTTG 1917
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2533 CAGAACAATGGGTTTGGTTCGGAAATGGATGTTGTAGATGTGAACAAGAGTGGACCGTTG 2592
Query 1918 GTTGCACAGTCTCCAGATAGTGTCATTGTGAAATGGGACAGTAA 1961
|||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 2593 GTTGCACAGTCTCCTGATAGTGTCATTGTGAAATGGGACA-TAA 2635
Score = 1101 bits (596), Expect = 0.0
Identities = 693/740 (94%), Gaps = 5/740 (1%)
Strand=Plus/Plus
Query 60 AGCAACTCAAACCCTCTCTCTTGATCCAAAGTTCAAGGCTTGTGAGCCGAAATCATGCGG 119
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 AGCAACTCAAACCTTCTCTCTTGATCCAAAGTTCAAGGCTTGTGAGCCGAAATCATGCGG 830
Query 120 CAAAGGTCCCCAGATCTCCTATCCATTTTATCTATCTGGAAAGCAAGAATCTTTTTGTGG 179
|| ||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 831 CAGAGGTCCCGAGATCTCTTATCCATTCTATCTATCTGGAAAGCAAGAATCTTTTTGTGG 890
Query 180 TTATCCAAGTTTTGAACTCACTTGTGATGATGAAGAAAAGCTCCCTGTTCTCGGGATCTC 239
||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 891 TTATCCAAGTTTTGAACTCGCTTGTGATTATGAACAAAAGCTCCCTGTTCTCGGGATCTC 950
Query 240 CGGTGAGGAATATGTCATCAAGAACATATCTTACTTAACACAGTCGTTTCAGGTCGTGAA 299
||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||| ||||
Sbjct 951 TGGTGAGGAATACGTCATCAAGAACATATCGTACTTGACACAGTCATTTCAGGTCTTGAA 1010
Query 300 CTCAAAGGC-T-TC-TCATGATCCATGTCCCAGACCGCTGAACAATCTTACCCTCCATAG 356
||||||||| | || | |||||||||||||||| || ||| ||||||||||||| |||||
Sbjct 1011 CTCAAAGGCGTCTCATGATGATCCATGTCCCAGCCCTCTGCACAATCTTACCCTGCATAG 1070
Query 357 GACTCCTTTCTTTGTGAACCCTTCTCATATCAACTTCACTATACTTTACAATTGTTCCGA 416
||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct 1071 GACTCCTTTCTTTGTGAACCCTTCTCATATCAACTTCTCCATACTTTACAATTGCTCCGA 1130
Query 417 TCACCTGCTGGAGGATTTTAGGACATACCCTCTTACTTGTGCTCGAAACACGAGTCTTCT 476
|||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||||
Sbjct 1131 TCACCTGCTGGAGGATATTAGGACATACCCTCTTACTTGTCCTGGCAACACGAGTCTTCT 1190
Query 477 TCGATCTTTTGGGGTCTTTGACAGAAAGAAACTTGGAAAAGAGAAACAAATTGCATCCAT 536
|| |||| ||||| |||||||||| | |||||||| |||||||||| |||||||||||||
Sbjct 1191 TCAATCTGTTGGGATCTTTGACAGGAGGAAACTTGAAAAAGAGAAAAAAATTGCATCCAT 1250
Query 537 GTCGTGCCAGAAACTAGTGGATGTTCCTGTTTTAGCTAGTAATGAGTCTGATGTGATGGG 596
|||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct 1251 GTCGTGCCAGAAACTAGTCGATGTTCCTGTTTTAGCTAGTGACGAGTCTGATGTGATGGG 1310
Query 597 TATGACTTATGTTGAGATTTTGAAGAGGGGTTTTGTTCTGAATTGGACTGCAAACAGTTG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 TATGACTTATGTTGAGATTTTGAAGAGGGGTTTTGTTCTGAATTGGACTGCAAACAGTTG 1370
Query 657 CTTCCGCTGCATCACCAGCGGCGGGAGATGTGGAACTGATCAACAAGAATTCGTATGCTT 716
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1371 CTTCCGCTGCATCACCAGCGGCGGGAGATGTGGAACTGATCAACAAGAATTTGTTTGCTT 1430
Query 717 GTGTCCTGATGGACCTAA-ACTTCATGATACTTGCACGAATGGCAAAAATGATAAAAGAA 775
|||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct 1431 GTGTCCTGATGGACCTAAGA-TTCATGATACTTGCACGAATGGCAAAAATGGTAAAAGAA 1489
Query 776 GGAGAGTGATAGTGAAGATT 795
| |||||||| ||||| |||
Sbjct 1490 GAAGAGTGATGGTGAAAATT 1509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80065694990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5