BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18410.1
Length=3423
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335100 jgi|Araly1|335100|fgenesh1_pg.C_scaffold_1001665 3009 0.0
Ahg925182 jgi|Araly1|925182|scaffold_200743.1 418 1e-115
> Ahg335100 jgi|Araly1|335100|fgenesh1_pg.C_scaffold_1001665
Length=2988
Score = 3009 bits (1629), Expect = 0.0
Identities = 1915/2051 (93%), Gaps = 27/2051 (1%)
Strand=Plus/Plus
Query 1387 GAGCTTGAACAATTTAAACAGGAGACAATGACCGTCACTACAAGCCTTGAAGCTCAAAAC 1446
|||||| ||||||| ||| | ||||| | || ||||||||||||||||||||| ||||
Sbjct 943 GAGCTTCAACAATTCAAAAAAGAGACGCTAACAGTCACTACAAGCCTTGAAGCTAAAAAT 1002
Query 1447 CGAGAGCTTGAACAAGCTATAAAA-GAGACAATGACTGTTAATACAAGCCTTGAAGCTAA 1505
||||||||||||||| || |||| ||||||||| |||||||||||||||||||||| ||
Sbjct 1003 CGAGAGCTTGAACAATTTA-AAAAGGAGACAATGTCTGTTAATACAAGCCTTGAAGCAAA 1061
Query 1506 AAACCGAGAGCTTGAACAATCTAAAAAAGAGACAATGACTGTTAATACAAGCCTTAAAGC 1565
||| |||||||||||||||| |||||| ||||| ||||| |||||||||||||| ||||
Sbjct 1062 AAATCGAGAGCTTGAACAATTTAAAAAGGAGACGGTGACTTTTAATACAAGCCTTGAAGC 1121
Query 1566 GAAAAACCGAGAGCTTGAACAAAATCTCGTCCACTGGAAGAGTAAAGCCAAAGAAATGGA 1625
||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1122 AAAAAATCGAGAGCTTGAAAAAAATCTGGTCCACTGGAAGAGTAAAGCCAAAGAAATGGA 1181
Query 1626 AGAAAAATCAGAGTTAAAGAATCGAAGTTGGAGTCAGAAAGAACTTTCCTATAGAAGCTT 1685
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1182 AGAAAAATCAGAGTTGAAGAATCGGAGTTGGAGTCAGAAAGAACTTTCGTATAGAAGCTT 1241
Query 1686 TATCAGTTTCCAGTGCCAGGCGCTACAAGAGTTGAGGTTCTATTCTAAGTCTATCAAACA 1745
|||||||||||| | | |||||||||||||||||||||||| |||||| || ||||||||
Sbjct 1242 TATCAGTTTCCAATTCAAGGCGCTACAAGAGTTGAGGTTCTGTTCTAACTCCATCAAACA 1301
Query 1746 AGAAATACTAAAAGTTCAAGATAAGTATACAGTAGAGTTTAGTCAATTAGGTAAGAAATT 1805
||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct 1302 AGAAATACTAAAAGTTCAAGATAAGTATACAACAGAGTTTAGTCAATTAGGGAGGAAATT 1361
Query 1806 GCTTGAACTTGGAGATGCTGCCGCAAACTATCACGAAGTCCTAACTGAAAACCAAAAGCT 1865
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1362 GCTTGAACTTGGAGATGCTGCTGCAAACTATCACGAAGTCCTAACTGAAAACCAAAAGCT 1421
Query 1866 CTTCAATGAACTTCAGGAGCTTAAAGGAAACATTAGAGTGTATTGTCGAGTGAGGCCTTT 1925
||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 1422 CTTCAATGAACTTCAGGAGCTAAAAGGCAACATTAGAGTGTATTGTCGGGTGAGGCCTTT 1481
Query 1926 CTTGCGTGGGCAAGGTGCATCAAAAACTGTGGTAGAACACATTGGTGATCATGGGGAGTT 1985
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 CTTGCGAGGGCAAGGTGCATCAAAAACTGTGGTAGAACACATTGGTGATCATGGGGAGTT 1541
Query 1986 GGTAGTTCTCAATCCAACAAAACCTGGCAAGGATGCTCATCGAAAATTTAGGTTCAATAA 2045
||||||||||||||||||||||||||| || |||| || ||||||||||| |||||||||
Sbjct 1542 GGTAGTTCTCAATCCAACAAAACCTGGGAAAGATGGTCTTCGAAAATTTAAGTTCAATAA 1601
Query 2046 GGTCTACAGTCCTGCCTCTACTCAAGCTGAGGTATTTTCAGATATAAAACCTCTTATTCG 2105
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1602 GGTCTACAGTCCTGCCTCTACTCAAGCTGAGGTATTTTCAGATATAAAACCTCTTGTTCG 1661
Query 2106 ATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAA 2165
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1662 ATCAGTTCTCGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCCGGGAA 1721
Query 2166 AACTTACACAATGACTGGTCCAGATGGAGCAAGCGAAGAAGAGTGGGGAGTAAACTATCG 2225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 AACTTACACAATGACTGGTCCAGATGGAGCAAGCGAAGAAGAGTGGGGAGTAAACTATCG 1781
Query 2226 TGCTCTCAATGACCTCTTCAGAATCTCTCAATCCCGTAAAAGCAACATAGCGTATGAAGT 2285
|||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||
Sbjct 1782 TGCTCTCAATGACCTCTTCAAAATCTCTCAAACCCGAAAAAGCAACATAGCGTATGAAGT 1841
Query 2286 TGGGGTGCAGATGGTGGAGATATACAATGAACAAGTGCGCGATTTACTCTCTGGGATTCT 2345
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 CGGGGTGCAAATGGTGGAGATATACAATGAACAAGTGCGCGATTTACTCTCTGGGATTCT 1901
Query 2346 CTCTACAACTCAACAGAACGGTCTTGCTGTACCTGATGCAAGCATGTATCCTGTGACATC 2405
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 TTCTACAACTCAACAAAACGGTCTTGCTGTACCTGATGCAAGCATGTATCCTGTGACATC 1961
Query 2406 CACCTCGGATGTTCTTGAATTAATGAGCATTGGGCTACAAAACCGAGTTGTTAGCTCCAC 2465
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1962 CACCTCGGATGTTCTTGAATTAATGAGCATTGGGCTACAAAACCGAGCCGTTAGCTACAC 2021
Query 2466 TGCCTTGAACGAAAGAAGTAGCCGCTCTCACAGCATTGTCACTGTTCATGTTCGTGGCAA 2525
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2022 TGCCTTGAACGAAAGAAGTAGCCGCTCTCACAGCATTGTGACTGTTCATGTTCGTGGCAA 2081
Query 2526 GGACTTGAAGACTGGTTCTGCGCTGTATGGAAATCTACATTTGGTAGATCTAGCAGGTAG 2585
|||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 2082 GGACTTGAAGACCGGTTCTGTGCTGTATGGAAATCTACATTTGGTAGATCTGGCAGGTAG 2141
Query 2586 TGAGAGAGTTGATCGCTCGGAAGTTACAGGAGACAGACTTAAAGAAGCACAACATATAAA 2645
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2142 TGAGAGAGTTGACCGCTCTGAAGTTACAGGAGACAGACTTAAAGAAGCACAACATATAAA 2201
Query 2646 CAAGTCACTCTCAGCTCTAGGAGATGTGATATTCTCTCTTGCTTCAAAAAGTTCTCATGT 2705
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2202 CAAGTCACTCTCATCTCTAGGAGATGTGATATTCTCTCTTGCTTCAAAGAGTTCTCATGT 2261
Query 2706 ACCATACAGGAACAGCAAACTAACTCAGCTTCTCCAAAGCTCTCTAGGTGGTCGAGCAAA 2765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2262 ACCATACAGGAACAGCAAACTAACTCAGCTTCTCCAAAGCTCTCTAGGTGGTCGAGCAAA 2321
Query 2766 GACACTAATGTTTGTTCAACTGAATCCTGATATTACTTCATATTCAGAGTCAATGAGTAC 2825
|||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2322 GACATTGATGTTTGTTCAACTCAATCCTGATATTACTTCATATTCAGAGTCAATGAGTAC 2381
Query 2826 TTTGAAATTCGCAGAGCGTGTCTCTGGAGTTGAGTTAGGAGCTGCTAAGAGCAGCAAAGA 2885
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 2382 TTTGAAATTCGCAGAGCGTGTCTCTGGAGTTGAGTTAGGTGCTGCAAAAAGCAGCAAAGA 2441
Query 2886 TGGTAGAGACGTTAGAGAATTAATGGAGCAG---G--------A----CACAATAGCGAG 2930
|||||||||||||||||| |||||||||||| | | ||||||||||||
Sbjct 2442 TGGTAGAGACGTTAGAGACTTAATGGAGCAGTTAGGGTCCCTTAAGGACACAATAGCGAG 2501
Query 2931 AAAAGACGATGAGATAGAGCGGCTTCATTTGCTTAAGGACATAAATTACCCACAGAGACT 2990
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2502 AAAAGACGATGAGATAGAGCGGCTTCATTTGCTTAAGGACATTAATTATCCACAGAGACT 2561
Query 2991 GCAGA-AAAAGAGCTTAGGACAATCCGATGACTTTAACTCAGAAGCGGGAGATTCGCAGT 3049
||||| |||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 2562 GCAGAGAAAA-AGCTTAGGACAATCCGATGACTTCAACTCAGAAGCTGGAGATTCACAGT 2620
Query 3050 TGTCTATAGAAGATGACTCAAGATTCCAACACGATTATACCAGACAGTCACGACACTCTG 3109
||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 2621 TGTCTATAGAAGACGACTCAAGAATCCAACAAGATTATACCAGACAGTCACGACACTCTG 2680
Query 3110 TCACGGACGGGGAGGCCTTAGCTTCTTCCACTGATGCGGAGTATGATGATGAAACAGAAG 3169
||||||| || ||| |||||||||| |||| |||||| ||||| |||||||||||||||
Sbjct 2681 TCACGGATGGTGAGACCTTAGCTTCCTCCATTGATGCAGAGTACGATGATGAAACAGAA- 2739
Query 3170 GATCCACTGATGCTCCTTGTGCAGCAGAAGGGAGAAAACCTTTAAAG-ATTTCAGACAAA 3228
|||| ||||||||||| |||||||||| ||||||||||||||| ||| ||||||||
Sbjct 2740 --TCCATTGATGCTCCTT---CAGCAGAAGGAAGAAAACCTTTAAAGTATT-CAGACAAA 2793
Query 3229 CCTAAACCGGTGACTCCAAGGAGTAATACGACAACATCACGACCACTTGATAAACTCAAG 3288
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 2794 CCTAAACCGGTGACTCCAGGGAGTAGTACGACAACATCACGACCACTTGATAAACTCAAG 2853
Query 3289 CAAGTCACTATGAGGACGACAAACATTGCAAAGGCTACGTCAGCCTTGTTGTCACCGAGT 3348
|||||| ||| ||||||| | ||||| |||||||| ||||||| ||||| |||||| |||
Sbjct 2854 CAAGTCGCTACGAGGACGTCGAACATAGCAAAGGCCACGTCAGGCTTGTCGTCACCAAGT 2913
Query 3349 TCTCAAGGCATGAAGAAGACGGGAAGTGCTTCTAATTTTCTAAAGTCACCGAAAGATTCG 3408
|||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 2914 TCTCAAGGCATGAAGAAGACGGGAAGTGCTTCTAATTTGCTCAAGTCATCGAAAGATTCC 2973
Query 3409 AAACGTTGGTC 3419
||||| |||||
Sbjct 2974 AAACGGTGGTC 2984
Score = 710 bits (384), Expect = 0.0
Identities = 484/532 (91%), Gaps = 8/532 (2%)
Strand=Plus/Plus
Query 994 acagaaaagtccaagctggaagaaaagaagaaagacaaagaGGAGGATATGGTTGGGATA 1053
||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 613 ACAGAAAAGTCTAAGCTGGAAGAGAAGAAGAAAGACAAAGAGGAGGATATGGTTAGGCTA 672
Query 1054 GAGAAAGAAAATGGTCATTATAATCTTGAAATTTCTACTCTAAGGCGAGAACTGGAGACA 1113
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 673 GAGAAAGAAAATGGTCATTATAATCTTGAAATTTCTACTTTAAGGCGAGAACTAGAGACA 732
Query 1114 ACCAAGAAAGCATATGAACAACAATGCTTACAAATGGAAAGCAAAACAAAAGG-CGCTAC 1172
||||||||||||||||||||||||||||| |||||||||||| | ||||| || ||||||
Sbjct 733 ACCAAGAAAGCATATGAACAACAATGCTTGCAAATGGAAAGCCAGACAAA-GGTCGCTAC 791
Query 1173 AGCTGGTATCGAGGACAGGGTTAAGGAGCTTGAACAAATGAGAAAGGATGCAAGCGTTGC 1232
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 792 AGCAGGTATCGAGGACAGGGTTAAGGAGCTTGAACAAATGAGAGAGGATGCAAGCACTGC 851
Query 1233 AAGAAAA-GCCCTTGAGGAAAGGGTTAGGGAGCTTGAAAAGATGGGAAAAGAAGCAGATG 1291
|| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 852 AA-AAATTGCCCTTGAAGAAAGGGTTAGGGAGCTTGAAGAGATGGGAAAAGAAGCAAATG 910
Query 1292 CTGTTAAAATGAATCTTGAGGAAAAGGTGAAGGAGCTTCAAAAATAT-AAAGATGAGACG 1350
|||||||||||| |||||||||||||||||||||||||||| ||| | ||| | ||||||
Sbjct 911 CTGTTAAAATGACTCTTGAGGAAAAGGTGAAGGAGCTTCAACAAT-TCAAAAAAGAGACG 969
Query 1351 ATAACTGTCACTACAAGCATTGAAGGTAAAAATCGAGAGCTTGAACAATTTAAACAGGAG 1410
|||| |||||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct 970 CTAACAGTCACTACAAGCCTTGAAGCTAAAAATCGAGAGCTTGAACAATTTAAAAAGGAG 1029
Query 1411 ACAATGACCGTCACTACAAGCCTTGAAGCTCAAAACCGAGAGCTTGAACAAGCTATAAAA 1470
|||||| | || | ||||||||||||||| |||| ||||||||||||||| || ||||
Sbjct 1030 ACAATGTCTGTTAATACAAGCCTTGAAGCAAAAAATCGAGAGCTTGAACAATTTA-AAAA 1088
Query 1471 G-AGACAATGACTGTTAATACAAGCCTTGAAGCTAAAAACCGAGAGCTTGAA 1521
| |||| ||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 1089 GGAGACGGTGACTTTTAATACAAGCCTTGAAGCAAAAAATCGAGAGCTTGAA 1140
Score = 664 bits (359), Expect = 0.0
Identities = 377/386 (98%), Gaps = 0/386 (0%)
Strand=Plus/Plus
Query 609 AGATCCATCATCCCCTGGATCAATGCTCCATGGAGGACACAAGTCCCACGAGGCTTTCCA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGATCCATCATCCCCTGGATCAATGCTCCATGGAGGACACAAGTCCCACGAGGCTTTCCA 179
Query 669 AATGAAACAGGGGCGATTTGATCTCCAAGCCGCAAAGATTTCAGAACTGATGAAATCAAA 728
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AATGAAACAGTGCCGATTTGATCTCCAAGCCGCAAAGATTTCAGAACTGATGAAATCAAA 239
Query 729 CAATTTAGATAATGCTCCCACACAGTCACTTCTAAGTATCGTTAATGGAATTCTTGATGA 788
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAATTTAGATAATGCTCCCACGCAGTCACTTCTAAGTATCGTTAATGGAATTCTTGATGA 299
Query 789 AACTATTGAGAGAAAGAATGGTGAACTCCCTCAGCGTGTAGCATGTCTGCTGAGAAAAGT 848
||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||
Sbjct 300 AACTATTGAGAGAAAGAATGGTGAAATCCCTCAGCGTGTAGCATCTCTGCTGAGGAAAGT 359
Query 849 CGTGCAGGAAATCGAGCGACGAATTTCAACTCAATCTGAACATCTAAGAACGCAAAACAG 908
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 360 TGTGCAGGAAATCGAGCGACGTATTTCAACTCAATCTGAGCATCTAAGAACGCAAAACAG 419
Query 909 TGTGTTTAAAGCTCGTGAGGAGAAGTACCAGTCAAGGATCAAAGTTCTTGAAACCTTAGC 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGTGTTTAAAGCTCGTGAGGAGAAGTACCAGTCAAGGATCAAAGTTCTTGAAACCTTAGC 479
Query 969 TTCAGGAACTAGTgaagaaaatgaga 994
||||||||||||||||||||||||||
Sbjct 480 TTCAGGAACTAGTGAAGAAAATGAGA 505
Score = 204 bits (110), Expect = 4e-51
Identities = 116/119 (97%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 436 ATGCCGTTCTTCTCTTGTTGCACCAAAAGAGCAATCTTCTGTTCCTCTCCAGGCAGCTCT 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCGTTCTTCTCTTGTTGCACCAAAAGAGCAATCTTCTGTTCCTCTCCAGGCAGCTCT 60
Query 496 CATGGAGGTTCAACTCCCCGTAGTCCCTTCTCTCCATCATCTCCACGTGAAAGGCATAA 554
|||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 61 CATGGAGGTTCAACTCCCCGTAGTCCCTTCTCTCCATCTTCTGCACATGAAAGGCATAA 119
> Ahg925182 jgi|Araly1|925182|scaffold_200743.1
Length=4422
Score = 418 bits (226), Expect = 1e-115
Identities = 258/273 (95%), Gaps = 4/273 (1%)
Strand=Plus/Plus
Query 1 ATGTTGGAATCTGAATTTCAGCGTGAACATGCTTTTGAAAGTGCTACAGAACAAGAATTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 844 ATGTTGGAATCTGAATTTCAGCGTGAACATGCTTTTGAAAGTGCTACAGAACAAGAATCA 903
Query 61 ACCTGTCCCATTTCCGATAACCTTCATGAGTCAGTTGAGGCTGACGATGACTCTGTTCAG 120
|| |||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 904 ACGTGTCCCATTTCCAATAACCTTCATGAGTCAGTTGATGCTGACGATGTCTCTGTTCAG 963
Query 121 -ATGTTAGATAATTTGACCTT-GAATACCAATCCTGCTGAGAGCTGTGAGTCTGAGGAAA 178
| ||||||||| |||||||| || | |||||||||||| ||||||||||||||||||||
Sbjct 964 CA-GTTAGATAACTTGACCTTAGA-TGCCAATCCTGCTGGGAGCTGTGAGTCTGAGGAAA 1021
Query 179 TTCAAACTAAAGCTCTTCCCTCAAGTTCCTCGGGACAAGATTTAGTTGCATCAGATGAAG 238
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 1022 TTCAAACTAAAGCTCTTCCTTCAAGTTCCTCAGGACAAGATTTAGTTGCATCGGATGAAG 1081
Query 239 ATTCAGAGGACGTGGAACTTGGCGATACATTCT 271
|||||||||||||||||||||||||||||||||
Sbjct 1082 ATTCAGAGGACGTGGAACTTGGCGATACATTCT 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129243517908
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5