BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18420.1
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911657 jgi|Araly1|911657|Al_scaffold_0001_1911 2617 0.0
> Ahg911657 jgi|Araly1|911657|Al_scaffold_0001_1911
Length=1728
Score = 2617 bits (1417), Expect = 0.0
Identities = 1626/1725 (94%), Gaps = 21/1725 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCACCAAAGCTGGAATCTTTCAGGCGGGGTAGCATGTTCGACGGATCTTTCAGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGCACCAAAGCTGGAATCTTTCAGGCGGGGTAGCATGTTCGACGGATCTTTCAGG 60
Query 61 CGAGGTAGTATGTTCGATGGTTCGTTTCGACAAAGCATGAGAGATAGGCTTAT--C-CTA 117
||||||||||||||||||||||||||| |||||||||||||||| |||||||| | | |
Sbjct 61 CGAGGTAGTATGTTCGATGGTTCGTTTAGACAAAGCATGAGAGAGAGGCTTATCCCACAA 120
Query 118 CAGAGCAGAGGCTATTCCAATGTCAACGACGATGACAAAACTTCCGTCCGTTGCTGCTCC 177
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 CAGAGCAGAAGCTATTCCAATGTCAACGACGATGACCAAACTTCCGTCCGTTGCTGCTCC 180
Query 178 TACAGCTACTTCTCTGACAAGATCACGGGGGTTGTGAAGAAATTAAAGGATGTTTTGGTT 237
||||| |||||||| ||||||||||| |||| ||||||||||| ||| ||||||||||||
Sbjct 181 TACAGGTACTTCTCCGACAAGATCACTGGGGCTGTGAAGAAATCAAAAGATGTTTTGGTT 240
Query 238 ACGGCATGGGAGATGGGAACAGCTGACCCGAGGAAGATGATATTCTCGGCGAAGATGGGT 297
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 ACGGCATGGGAGATGGGAACAGCTGACCCGAGGAAGATCATATTCTCGGCGAAGATGGGT 300
Query 298 TTGGCTCTGACACTTACCTCTATCCTCATCTTCTTTAAGATCCCAGGATTAGAGCTCAGC 357
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTAGCTCTGACACTTACCTCTATCCTCATCTTCTTTAAGATCCCAGGATTAGAGCTCAGC 360
Query 358 GGCCACTATCTCTGGGCAATTCTTACAGTAGTTGTTATCTTCGAGTTCAGTATAGGAGCC 417
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 AGCCACTATCTCTGGGCAATTCTTACAGTAGTTGTTATTTTCGAGTTCAGTATAGGAGCC 420
Query 418 ACCTTTAGCAAAGGATGTAACCGGGGACTAGGAACATTGTCCGCAGGAGGACTGGCGCTT 477
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 421 ACCTTTAGCAAAGGATGTAACCGGGGACTAGGAACATTGTCCGCTGGAGGATTGGCGCTT 480
Query 478 GGCATGTCTTGGATATCGGAGATGACTGGAAATTGGGCAGATGTTT-TTAATGCTGCTAG 536
|||||| |||||||||| ||||||| |||| | |||| ||| |||| |||||||||||||
Sbjct 481 GGCATGGCTTGGATATCCGAGATGAGTGGAGACTGGGGAGA-GTTTCTTAATGCTGCTAG 539
Query 537 CATCTTTGTAGTAGCCTTTTTTGCGACTTATGCAAAGCTATATCCAACGATGAAGCCTTA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 CATCTTTGTAGTAGCCTTTTTTGCGACTTATGCAAAGCTATATCCAACGATGAAGCCATA 599
Query 597 CGAGTACGGATTCCGGGTGTTCTTGCTGACCTATTGCTACGTAATAGTGTCAGGATACAA 656
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGAGTATGGATTCCGGGTGTTCTTGCTGACCTATTGCTACGTAATAGTGTCAGGATACAA 659
Query 657 AACAGGGGAATTCATGGAAACAGCTGTTTCAAGGTTCCTTCTGATAGCTCTTGGTGCCAG 716
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 660 AACAGGGGAATTCATGGAAACAGCTGTTTCAAGGTTCCTTCTAATAGCTCTTGGTGCCTG 719
Query 717 TGTTGGCCTCATAGTGAATACTTGCATTTATCCCATATGGGCTGGGGAAGATCTCCATAA 776
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGTTGGCCTCGTAGTGAACACTTGCATTTATCCCATATGGGCTGGGGAAGATCTCCATAA 779
Query 777 CTTGGTCGCCAAGAACTTTGTGAACGTAGCGACTTCTCTGGAAGGTTGTGTGAACGGATA 836
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 780 CTTGGTCGCCAAGAACTTTGTGAACGTAGCGACTTCTTTGGAAGGTTGTGTGAATGGATA 839
Query 837 TCTTGAGTGCGTAGCATATGATACAATCCCATCTAGGATTCTGGTCTATGAAGCTGTCGC 896
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCTCGAGTGCGTAGCATATGATACAATCCCATCTAGGATTCTGGTCTATGAAGCTGTCGC 899
Query 897 GGAAGATCCAGTGTACAGTGGTTACAGATCAGCCGTTCAATCTACAAGCCAAGAAGACAC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGAAGATCCAGTGTACAGTGGTTACAGATCAGCCGTTCAATCTACAAGCCAAGAAGACAC 959
Query 957 CCTGATGAGTTTTGCATCATGGGAGCCACCACACGGACCGTACAAATCCTTTAGATACCC 1016
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 TCTGATGGGTTTTGCTTCATGGGAGCCACCACACGGACCGTACAAATCCTTTAGATATCC 1019
Query 1017 ATGGGCACTGTATGTGAAAGTAGGTGGTGCATTGAGGCATTGTGCTATCATGGTCATGGC 1076
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ATGGGCAATGTATGTGAAAGTAGGTGGTGCATTGAGGCATTGTGCTATCATGGTCATGGC 1079
Query 1077 GTTACATGGCTGCATTCTCTCAGAGATCCAGGCTGCAGAGGATAGAAGACGAGAATTTCG 1136
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1080 GTTACATGGCTGCATTCTCTCAGAGATTCAGGCTGCAGAGGATAGAAGACGAGAATTTCG 1139
Query 1137 TAATGAGCTTCAAAGAGTGGGAATCGAAGGAGCAAAAGTACTAAGATACATTGGGGAA-A 1195
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 1140 TAATGAGCTTCAAAGAGTGGGGATCGAAGGAGCAAAAGTACTCAGATACATTGGGGAACA 1199
Query 1196 GCCTGAAGAAGATGGAGAAGCTAAACCCTATAGAAGACATACTCTACGAGATTCACCAAG 1255
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AC-TGAAGAAGATGGAGAAACTAAACCCTATAGAAGACATACTCTACGAGATTCACCAAG 1258
Query 1256 CAGCAGAAGAACTACAGAGCAAAATCGACAAGAAATCATACCTTCTCGTGAACGCCAAGA 1315
|||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1259 CAGCCGAAGAACTACAGAGCAAAATCGACAAAAAATCGTACCTTCTCGTGAACGCCAAGA 1318
Query 1316 ATTGGGAAATCGGGAACCGGCCTAGGGTTAGGGATTTGACTGATGAACAAAAAATCTCGA 1375
| |||||||||||||| |||||||||| | || |||||||||||||||||||||||
Sbjct 1319 ACTGGGAAATCGGGAATCGGCCTAGGG--A----TTCGACTGATGAACAAAAAATCTCGA 1372
Query 1376 ATCTCGACTCTGATCTAAGTCGGATCTTGGCTCATAAATCTCAGAGTGAAGCCACTCTTC 1435
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1373 ATCTCGACGAGGATCTAAGTCGGATCTTGGCTCATAAATCCCAGAGTGAAGCCACGCTTC 1432
Query 1436 GTCCACCGAAGAATTGGGATGATGTTACAAC---TGCAGCTAACTTGAGTTCGGCGACGA 1492
||||||||||||||||||| | || ||||| |||| | ||||| | |||||||||||
Sbjct 1433 GTCCACCGAAGAATTGGGACGCGGTAACAACAACTGCAACGAACTTAAATTCGGCGACGA 1492
Query 1493 TGCTTCCTTACCTGCAATCAAGGACGATGATACATAAACAGCCGTCGTGGCCTAGCCGGA 1552
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TGCAACCTCACCTGCAATCAAGGACGATGATACATAAACAGCCGTCGTGGCCTAGCCGGA 1552
Query 1553 TCTCTATTACGCCGGGAAGTATGTTACAGCCACCACT-GGGAG--AGCCGG-GAAAAATG 1608
||||||||||||||||||||||||| |||| |||| | ||| | || || | | |
Sbjct 1553 TCTCTATTACGCCGGGAAGTATGTTTCAGCAACCAATTGGGGGGGAGGCGACGCTGAG-G 1611
Query 1609 TACGAGAGCGCGAGTAATCTTTCTCTAGCTACGTTCGCTTCGCTACTGATCGAATTCGTC 1668
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1612 TACGAGAGCGCGAGTAATCTGTCTCTAGCAACGTTCGCTTCGCTACTGATCGAATTCGTC 1671
Query 1669 GCGAGGCTTGAGAATCTCGTGAATGCGTACGATGAGCTCAGTGTC 1713
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1672 GCGAGGCTTGAGAATCTCGTGAATGCGTATGATGAGCTCAGTGTC 1716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65515221400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5