BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18440.1
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472062 jgi|Araly1|472062|fgenesh2_kg.1__2016__AT1G18440.1 1347 0.0
> Ahg472062 jgi|Araly1|472062|fgenesh2_kg.1__2016__AT1G18440.1
Length=921
Score = 1347 bits (729), Expect = 0.0
Identities = 858/916 (94%), Gaps = 25/916 (3%)
Strand=Plus/Plus
Query 1 CTAATTCCCCAGAAGAAAAGATGAAAGCTGTAGCTTTTCCCGCTAAAATCGCAAATCTTA 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1 CTAATTCCCCAGAAGAAAAGATGAAATCTGTAGCTTTTCCCGCTAAAATCGCAAATCTCA 60
Query 61 GCTTCCCTTCTAACTGTTGCTCACTATTCTTCCGATCACCGGCGACGTTTTTATCGCCGG 120
||||||||||| |||| ||| | | | | | | ||||| |||||||
Sbjct 61 GCTTCCCTTCTGGCTGTAGCT--C-A--C-T--G-T-----------TTTTT-TCGCCGG 99
Query 121 CATTGCCTTGTCGGAAGCTGACGAAAGGAATAAGAGGTCTC-GAAGGCTTGATGTCTCAG 179
|||||||||||||||||||||| ||||||| ||||||| || ||| ||||||||||||||
Sbjct 100 CATTGCCTTGTCGGAAGCTGACAAAAGGAACAAGAGGTGTCGGAA-GCTTGATGTCTCAG 158
Query 180 TGTTTATCATCATCGTCACAATCATTGTCAT-TTTCATCGAATTCATTCTCCTCTCAACC 238
||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 159 TGTTTGTCATCATCGTCACAATCATTGTCATATTT-ATCGAATTCATTCTCCTCTCAACC 217
Query 239 GGAATCAGAGTTACTTCAAGCTTTACCTTCTTCGAAGCCAAAATCTCCGCCACTGCAGCT 298
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 218 GGAATCAGAGTTACTTCAAGCTTTACCCTCTTCGAAGCCAAAATCTCCGCCACCGCAGCT 277
Query 299 GCCATGGCTCATTGTTGGTTTGGGTAATCCCGGCAAGAAGTACCAGGGCACGCGCCACAA 358
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 278 GCCATGGCTCATTGTTGGTTTGGGTAATCCCGGAAAGAAGTACCAGGGCACGCGCCACAA 337
Query 359 CGTTGGTTTTGAGATGGTGGACGCTTTGGCTGATGCAGAAGGCATCTCCATGAACACTGT 418
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 338 CGTTGGTTTTGAGATGGTGGACGCTTTGGCTAATGCAGAAGGCATCTCCATGAACACTGT 397
Query 419 TAACTTCAAGGCCTTGTTTGGGAAAGGCGTTATTGGAAATATACCGATTATGCTGGCTAA 478
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 398 TAACTTCAAGGCCTTGTTTGGAAAAGGCGTTATTGGAAATGTACCGATTATGCTGGCTAA 457
Query 479 ACCACAAACTTTCATGAACCTAAGTGGTGAGTCTGTTGGACAAATCGTTTCATTTTACAA 538
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 458 ACCACAAACTTTCATGAACCTAAGTGGTGAGTCTGTTGGACAAATTGTTTCATTTTACAA 517
Query 539 GATCCCGTTAAAGCAAGTACTTGTGGTTTACGATGATTTAGATTTGCCCTTTGGTAAACT 598
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 GATCCCGCTAAAGCAAGTACTTGTGGTTTACGATGATTTAGATTTGCCCTTTGGTAAACT 577
Query 599 ACGTTTATTGCCAAAAGGTGGTCACGGAGGCCACAATGGGATGAGAAGTATTATAGACCG 658
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 578 GCGTTTATTGCCAAAAGGTGGTCACGGAGGCCACAATGGGATGAGAAGCATTATAGATCG 637
Query 659 CCTCAAAGGTAGCCGTGATTTTCCTCGACTAAGAATAGGGATCGGACGTCCTCCAGGGAA 718
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 638 CCTCAAAGGTAGCCGTGATTTTCCTCGTCTAAGAATAGGGATCGGTCGGCCTCCAGGGAA 697
Query 719 GATGGATACAGCCAATTTTGTTCTCCGCCAGTTCAATAGACAGGAACAGGAAGAGTTGGA 778
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 698 GATGGATACAGCCAATTTTGTTCTCCGCCAGTTCAATAGACAAGAACAGGAAGAGTTGGA 757
Query 779 TCACACATTCCAAACCGGGTTAGAGGCAATAAGGATTCTTTTGCTTGAGGGGTTCAACAA 838
| | ||||||||||||||| |||| || |||||||||||||||||||||||| |||||||
Sbjct 758 TTATACATTCCAAACCGGGATAGAAGCCATAAGGATTCTTTTGCTTGAGGGGATCAACAA 817
Query 839 AAGTGCAACATTTGTCAACACTCGAAAATCTATGGAGCAACTCAGTTAGAAGTGACATTG 898
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 818 AAGTGCAACCTTTGTCAACACTCGAAAATCTATGGAGCAACTCAGTTAGAAGAGACATTG 877
Query 899 TTACATTACATATATT 914
|||||| |||||||||
Sbjct 878 TTACATCACATATATT 893
Score = 56.5 bits (30), Expect = 4e-07
Identities = 33/34 (97%), Gaps = 1/34 (3%)
Strand=Plus/Plus
Query 972 ATACTTGAATCCTTTTTGAGCAAATTGTACATCA 1005
||| ||||||||||||||||||||||||||||||
Sbjct 889 ATA-TTGAATCCTTTTTGAGCAAATTGTACATCA 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41401487862
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5