BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18460.1
Length=2460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472064 jgi|Araly1|472064|fgenesh2_kg.1__2018__AT1G18460.1 3727 0.0
Ahg476529 jgi|Araly1|476529|fgenesh2_kg.2__1659__AT1G73920.1 1565 0.0
> Ahg472064 jgi|Araly1|472064|fgenesh2_kg.1__2018__AT1G18460.1
Length=2377
Score = 3727 bits (2018), Expect = 0.0
Identities = 2237/2342 (96%), Gaps = 17/2342 (1%)
Strand=Plus/Plus
Query 52 aaaaaaaaaCGTTTCTTTTCTCTTCGATTCCCGATTACGGCttttgattttgtgggactc 111
||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 1 AAAAAAAAACGTTTCTTTTTTCTTCGATTCGCGATTACGTCTTTTGATTTTGTGGGACTC 60
Query 112 ttctcagtttttctggg-cttttggtttttggattctatcttcttt-catttttcag-at 168
|||| ||||||||||| | ||| | |||||||||||||||| ||| |||||||||| ||
Sbjct 61 ATCTCGGTTTTTCTGGGAC-TTT-GATTTTGGATTCTATCTT-TTTACATTTTTCAGAAT 117
Query 169 tttttattttattttgttgtatttctatatt-GGGAAACAAAATCATGCAGAGGATCGTC 227
||||| |||| |||| || | ||| |||||| ||||||||||||||||||||||||||||
Sbjct 118 TTTTT-TTTT-TTTTTTTTTTTTTTTATATTGGGGAAACAAAATCATGCAGAGGATCGTC 175
Query 228 GATAATGCTCTTGCTATCACAAAAGAGTCAGTGAAAACTCTGACTTATGAGTCTTTGAAC 287
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 176 GATAATGCTCTTGCTGTCACAAAAGAGTCAGTGAAAACTTTGACTTATGAGTCTTTGAAC 235
Query 288 AACATTGCAAGATGCATTAATGGATTTTCTGCGCTTCTCTTGACACTTTTGCCCGGAAAG 347
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 AACTTTGCAAGATGCATTAATGGATTTTCTGCGCTTCTCTTGACACTTTTGCCCGGAAAG 295
Query 348 TCCAATGTTCTTGAAGGTCTTCATGGATGGGAGCTTAGGCCTACATTGCGTGGACCTCGT 407
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 296 TCCAATGTTCTTGAAGGTCTTCATGGATGGGAGCTCAGGCCGACATTGCGTGGACCTCGT 355
Query 408 TTACCACGCTGGATGCATAATGGAGTCTCTTCTTTCAACCACTTCATTCACGAACTCTCT 467
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 356 TTACCACGGTGGATGCATAATGGAGTCTCTTCTTTCAACCACTTCATTCACGAGCTCTCT 415
Query 468 GTGGATTCTGATACTTCTAGCTTGGACTATTCCTCTGGTGATGATGATAGTGATGGCATG 527
||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 416 GTGGATTCTGATACTTCAAGCTTGGACTATTCCTCTGGAGAAGATGATAGTGATGGCATC 475
Query 528 TCCACGCCTCCATCACCCTTGTCTCAAAGCTCACTCCGCTCTTGGGCTAGTCTTCCTGCC 587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TCCACGCCTCCATCACCCTTGTCTCAAAGCTCACTCCGCTCTTGGGCTAGTCTTCCTGCA 535
Query 588 AATTACGAAAGCCATTGGACAGACTGGATAACCTTCATTGTCTGGTGGGCTTTACTACCT 647
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 536 AATTACGAAAGCCATTGGACAGAGTGGATAACCTTCATTGTCTGGTGGGTTTTACTACCT 595
Query 648 GCCCGGATCCTTCTATGGGTACCATTATATCTTTTACGTCTTTTAGCTAGAAGAAATTCA 707
|||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||
Sbjct 596 GCCCGGATCCTTCTATGGTTACCATTATATCTTTTACGTCTTTTAGGTAGACGAAATTCA 655
Query 708 AGAATG-CAGCCTCTGAGCCCAGGAAGGTACCAACATTCGTCTAGACCTTGTTTTAGCAA 766
|||||| || ||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 656 AGAATGTCA-CCTATGAGCCCAGGAAGGTACCAACATTCGTCTAGACCTTATTTTAGCAA 714
Query 767 AGCTATCTCAGGGAAAGAGCATGACGTGCCC-AACCGAACTACTGATAAAAGACGCGGAG 825
||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 715 AGCTATCCCAGGGAAAGAGCATGACGT-CCCTAACCGAACTACTGATAAAAGACGCGGAG 773
Query 826 TCATTGAGGATCTTCAGCTTGGTATCGAGATCTTTATAGAAACAATATTTGATTTCTTTC 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 774 TCATTGAGGATCTTCAGCTTGGTATCGAGATCTTTATAGAAACAATATTTGATTTTTTTC 833
Query 886 ACAAGGCGGCACATCTTCTTCTTTCTCCATCAGAAACTTTTGGAATAGTTTTATCATGGT 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 ACAAGGCGGCACATCTTCTTCTTTCTCCATCAGAAACTTTTGGAATAGTTTTATCATGGT 893
Query 946 TCTCTTCCTCCAGTCACAGCTCTAAAGGAAACTATGGTGACGTTTCGGATGATGAGATCA 1005
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 894 TCTCTTCCTCCAGTCACAGCTCTAAAGGAAACTATGGCGACGCTTCGGATGATGAGATCG 953
Query 1006 TTCAGACTGCCATTCTAGGAGATAACGATTCATCTCTTACAGAAAGAAGAACCACAACGA 1065
| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
Sbjct 954 TGCAGACTGCCATTCTAGGAGATAGTGATTCATCTCCTACAGAAAGAAGAACCACAACAA 1013
Query 1066 GCTTATACAATACAGATACCCGGACCTGTCAAGATGTTATAACAGAGCTTGGGTATCCAT 1125
||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| |
Sbjct 1014 GCTTATACAATACAGATACTCGGACTTGTCAAGATGTTATAACAGAGTTTGGGTATCCGT 1073
Query 1126 ATGAAGCTATTCGTGTTGTTACATCTGATGGATATGGTCTTCTCTTGGAAAGGATACCAA 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 ATGAAGCTATTCGTGTTGTTACATCTGATGGATATGGTCTTCTCTTGGAAAGGATACCAA 1133
Query 1186 GACGAGATGCGAGGAAAGCTGTTTATTTGCAGCATGGTGTAATGGATTCTTCAATGGGAT 1245
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GACGAGATGCCAGGAAAGCTGTTTATTTGCAGCATGGTGTAATGGATTCTTCAATGGGAT 1193
Query 1246 GGGTATCAAATGGTGTTGTTGGATCACCAGCTTTTGCAGCTTATGATCAAGGCTACGATG 1305
||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||
Sbjct 1194 GGGTATCAAATGGTGTTGTTGGATCTCCGGCTTTTGCTGCTTATGATCAAGGCTATGATG 1253
Query 1306 TTTTCCTAGGGAACTTTCGTGGTTTAGTTTCAAGAGATCATGTGaaaaaaaaCATATCCT 1365
||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||
Sbjct 1254 TTTTCCTAGGGAACTTTCGCGGTTTAGTTTCAAGAGATCATGTGAACAAAAACTTATCCT 1313
Query 1366 CAAAAGATTTCTGGCGTTACTCCATCAATGAACATGCAACGGAAGATATCCCAGCAATGA 1425
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1314 CAAAAGATTTCTGGCGTTACTCCATCAATGAGCATGCAACAGAAGATATCCCAGCAATGA 1373
Query 1426 TAGAGAAGATTCACGAAATCAAAACTTCAGAACTGAAACTTTATCAGCCTACTATGGAAG 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TAGAGAAGATTCACGAAATCAAAACTTCAGAACTGAAACTTTATCAGCCTACTATGGAAG 1433
Query 1486 AGGTAGTAAACGAGGATCAACCGTATAAGCTTTGTGTTGTATCTCACAGTTTAGGCGGTG 1545
|||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 1434 AGGTAGTAAACGAGGAGCAACCATATAAGCTCTGTGTTGTATCTCACAGTTTAGGCGGCG 1493
Query 1546 CCGCGGTTCTGATGTATGTAATCACCCGTAAAATCGAAGAGAAACCGCACAGACTCTCGA 1605
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 CCGCAGTTCTGATGTATGTAATCACCCGTAAAATCGAAGAGAAACCGCACAGACTCTCGA 1553
Query 1606 GACTGATCCTT-CTTTCGCCTGCTGGGTTTCACTATGACTCCAACATGTGTTTCACGTTG 1664
||||| | ||| ||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1554 GACTGGT-CTTGCTTTCGCCTGCTGGGTTTCACGATGACTCCAACATGTGTTTCACATTG 1612
Query 1665 ATGGAGTACACGTTCCTTTTCTTGGGTCCTGTACTATCTCGGATTGTTCCTGCTTTCTAC 1724
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 ATGGAGTACACATTCCTTCTCTTGGGTCCTGTACTATCTCGGATTGTTCCTGCTTTCTAC 1672
Query 1725 ATCCCCACTAAATTCTTCCGGATGCTTCTCAACAAGTTAGCTCGAGATTTCCATAACTAT 1784
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 ATCCCCACTAAATTCTTCAGGATGCTTCTCAACAAGTTAGCTCGAGATTTCCATAACTAT 1732
Query 1785 CCTGCTGTTGGTGGATTAGTCCAAACATTGATGAGTTATGTAGTTGGCGGAGATAGCTCA 1844
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1733 CCTGCTGTTGGTGGATTAGTCCAGACATTGATGAGTTATGTAGTTGGCGGAGATAGCTCA 1792
Query 1845 AACTGGGTTGGAGTCATGGGATTGCCTCACTATAACATGAACGATATGCCAGGTATATCC 1904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 AACTGGGTTGGAGTCATGGGATTGCCTCACTATAACATGAACGATATGCCAGGTATATCC 1852
Query 1905 TTCCGTGTGGCTCAGCATCTTGCACAGATTAAACATAGCGGTAAGTTCAAGATGTTTGAT 1964
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1853 TTCCGTGTGGCTCAGCATCTTGCGCAGATTAAACATAGCGGTAAGTTCAAGATGTTTGAT 1912
Query 1965 TACGGTAGCAGTTCAGCTAATATGGATGTTTACGGGTCCCCTGAGCCGCTCGATCTTGGG 2024
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||
Sbjct 1913 TACGGTAGCAGTTCAGCTAATATGGAGGTTTACGGGTCTCCTGAGCCACTCGACCTTGGG 1972
Query 2025 GAGTTTTATGGGTTGATCGATGTGCCTGTGGATTTAGTAGCTGGAAAGAAAGACAAAGTG 2084
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1973 GAGTTTTACGGGTTAATCGATGTGCCTGTGGATTTAGTAGCCGGAAAGAAAGATAAAGTG 2032
Query 2085 ATTAGACCTTCAATGGTTAGGAAACATTACAGGGTGATGAGAGATTCAGGAGTAGATGTT 2144
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2033 ATTAGACCTTCAATGGTTAGGAAACATTACAGGGTGATGAGAGATTCAGGAGTTGATGTT 2092
Query 2145 TCTTACAATGAGTTTGAGTATGCTCATTTGGATTTTACCTTCTCTCACCGTGAAGAGCTT 2204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2093 TCTTACAATGAGTTTGAGTATGCTCATTTGGATTTTACCTTCTCTCACCGTGAAGAGCTT 2152
Query 2205 TTGGCGTATGTGATGTCGCGGTTACTTCTCGTGGAGCCAACGCAGACTCAGACGGTTCAT 2264
|||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||
Sbjct 2153 TTGGCGTATGTGATGTCGCGGTTACTGCTCGTGGAGCCAACGCCCACTCAGACAAATCAT 2212
Query 2265 AAGAAGGGGATGAAGCTGAAGAAGAAAATGGAAACAGGCAAACCTCATCTGTGAACTACT 2324
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 2213 AAGAAGGGGATGAAGCTGAAGAAGAAGATGGAAACAGGCAAACCTCATCTATGAATTAC- 2271
Query 2325 AGAAG-AGGCTTTTATAGAGTTTATGTTTGTCGTCTTTGTAATGTTTTTTGTTCACGAAA 2383
|||| ||||||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 2272 AGAATTAGGCTTTTACAGAGTTTATGTTTGTCTTATTTGTAATGTTTTTTGTTCACGAAA 2331
Query 2384 GT 2385
||
Sbjct 2332 GT 2333
> Ahg476529 jgi|Araly1|476529|fgenesh2_kg.2__1659__AT1G73920.1
Length=2471
Score = 1565 bits (847), Expect = 0.0
Identities = 1683/2075 (81%), Gaps = 103/2075 (5%)
Strand=Plus/Plus
Query 207 AAAATCATGCAGA-GGATCGTCGATAATGCTCTTGCTATCACAAAAGAGTCAGTGAAAAC 265
||| ||||||| | ||||||| || || ||||| ||| | || ||||| |||||||||||
Sbjct 167 AAAGTCATGCA-ACGGATCGTAGACAACGCTCTCGCTGTAACCAAAGAATCAGTGAAAAC 225
Query 266 TCTGACTTATGAGTCTTTGAACAACATTGCAAGATGCATTAATGGATTTTCTGCGCTTCT 325
| | || |||||||||||||||||||||||||||||||| |||||| | || || |||||
Sbjct 226 TGTTACATATGAGTCTTTGAACAACATTGCAAGATGCATAAATGGAGTATCAGCTCTTCT 285
Query 326 CTTGACACTTTTGCCCGG-AAAGTCCAATGTTCTTGAAGGTCTTCATGGATGGGAGCTTA 384
||||| ||| | || || |||| | ||| ||||||||||||| ||||| ||||| || |
Sbjct 286 GTTGACTCTTCTACCGGGGAAAG-CTAATATTCTTGAAGGTCTCCATGGCTGGGAACTCA 344
Query 385 GGCCTACATTGCGTGGACCTCGTTTACCACGCTGGATGCATAATGGAGTCTCTTCTTTCA 444
|||| || || |||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 345 GGCCCACGTTTCGTGGACCACGTTTACCACGGTGGATGCATAATGGGGTCTCTTCTTTCA 404
Query 445 ACCACTTCATTCACGAACTCTCTGTGGATTCTGATACTTCTAGCTTGGACTATTCCTCTG 504
|| | |||||||| || || |||||||||||||||||||| |||||||| ||||| ||||
Sbjct 405 ACGAGTTCATTCATGAGCTTTCTGTGGATTCTGATACTTCAAGCTTGGAGTATTCTTCTG 464
Query 505 GTGATGATGATAGTGATGGCATGTCC-ACGCCTCCATCACCCTTGTCTCAAAGCTCACTC 563
| || | ||||||||||| | || | |||||||||||| | ||||||||||||| |
Sbjct 465 GAGA--A-GATAGTGATGG--T--CCGATGCCTCCATCACCATCATCTCAAAGCTCACGC 517
Query 564 CGCTCTTGGGCTAGT-CTTCCTGCCAA-TTAC-GAAAGCCATTGGACAGACTGGATAACC 620
| |||||||||||| |||| ||| || || | |||| ||| |||||||| ||||| ||
Sbjct 518 CTCTCTTGGGCTAGCACTTC-TGC-AAGTT-CTGAAAACCACTGGACAGAGTGGATTACG 574
Query 621 TTCATTGTCTGGTGGGCTT--TACTACCTGCC-CGGATCCTT-CTATGGGTACCATTATA 676
|||||| | |||||| || || | ||| | |||||| || |||||| |||| |||
Sbjct 575 TTCATTCTTTGGTGG--TTAATATTTCCT-CTACGGATC-TTGCTATGGATACCGCAATA 630
Query 677 TCTTTT-ACGTCTT-TTAGCT-AGAA-GAAATTCAAGAATGCAGCCT-CTGAGCCC-AGG 730
| || | | || || || || | || ||| |||| || | ||| | |||||| ||
Sbjct 631 TATTATGA-GT-TTATTC-CTTA-AACGAAGTTCACCAA--CT-CCTGC-GAGCCCGAG- 681
Query 731 AAGGTACCAACATTCGTCTAGACCTTGTTTTAGCAA-AGCTATCTCAGGGAAAGAGCATG 789
|||| |||||||||| ||||||| | || |||| || | | || ||| | ||||| ||||
Sbjct 682 AAGGCACCAACATTCATCTAGACATCGTATTAGTAAGACCAAT-TCAAGCAAAGACCATG 740
Query 790 ACGTGCCCAACCGAACTACTGATAAAAGACGCGGAGTCATTGAGGATCTTCAGCTTGGTA 849
| || ||||||||||||||||||| |||||||||||| |||||||||||||| |||| ||
Sbjct 741 ATGTTCCCAACCGAACTACTGATAGAAGACGCGGAGTGATTGAGGATCTTCATCTTGCTA 800
Query 850 TCGAGATCTTTATAGAAACAATATTTGATTTCTTTCACAAGGCGGCACATCTTCTTCTTT 909
|||||||| |||||| ||||||||||||| ||||||||| | |||||||||||||||
Sbjct 801 TCGAGATCGCCATAGAAGCAATATTTGATTTTTTTCACAAGACTACACATCTTCTTCTTT 860
Query 910 CTCCATCAGAAACTTTTGGAATAGTTTTATCATGGTTCTCTTCCTCCAGTCACAGCTCTA 969
||||||||||| |||||| |||| | |||||||||||||| || |||||||||||| |||
Sbjct 861 CTCCATCAGAAGCTTTTGCAATACTGTTATCATGGTTCTCATCTTCCAGTCACAGCCCTA 920
Query 970 AAGGAAACTATGGTGACGTTTCGGATGATGAGATCAT-T-CAGACTGCCA-TTCTAGGAG 1026
||| |||| ||||||||||| | ||||||| || | | | || ||||| | || ||||||
Sbjct 921 AAGAAAACCATGGTGACGTTACAGATGATG-GAAC-TGTGCAAACTGCTACTT-TAGGAG 977
Query 1027 ATAAC-GATTCATCTCTTACAGAAAG----A-AGAA---CC-ACAACGAGCTTATACAA- 1075
||| | ||| |||| | || ||||| | |||| || ||| || |||||||||
Sbjct 978 ATA-CTGATCCATCCCCCACGGAAAGGCCCATAGAAAGGCCCACA-CG--CTTATACAAC 1033
Query 1076 T--A----CA--GATACCCGGACCTGTCAAGATGTTATAACAGAGCTTGGGTATCCATAT 1127
| | || ||||| || || ||||||||||| ||||||||||| |||||||| ||
Sbjct 1034 TCTATGAACACAGATACTCGAACGTGTCAAGATGTCATAACAGAGCTGGGGTATCCTTAC 1093
Query 1128 GAAGCTATTCGTGTTGTTACATCTGATGGATATGGTCTTCTCTTGGAAAGGATACCAAGA 1187
|||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 1094 GAAGCTATTCGTGTTGTTACATCTGACGGATATGTTCTTGTCTTGGAAAGGATACCAAGA 1153
Query 1188 CGAGATGCGAGGAAAGCTGTTTATTTGCAGCATGGTGTAATGGATTCTTCAATGGGATGG 1247
|| ||||| ||||||||||||| |||||||||||| || ||||||| || |||||||||
Sbjct 1154 CGTGATGCTAGGAAAGCTGTTTTTTTGCAGCATGGGGTTTTGGATTCATCTATGGGATGG 1213
Query 1248 GTATCAAATGGTGTTGTTGGATCACCAGCTTTTGCAGCTTATGATCAAGGCTACGATGTT 1307
|| || ||||| ||||||||||| || |||||||| || ||||| |||||||||||||||
Sbjct 1214 GTCTCTAATGGGGTTGTTGGATCTCCGGCTTTTGCTGCGTATGACCAAGGCTACGATGTT 1273
Query 1308 TTCCTAGGG-AACTTTCGTGGTTTAGTTTCAAGAGATCATGTGaaaaaaaaCATATCCTC 1366
|| || ||| |||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 1274 TTTCT-GGGTAACTTTCGGGGTTTAGTTTCAAGAGATCATGTGAACAAGAACATATCCTC 1332
Query 1367 AAAAGATTTCTGGCGTTACTCCATCAATGAACATGCAACGGAAGATATCCCAGCAATGAT 1426
|||||| |||||||| |||||||| || || || | || |||||||||||||| |||||
Sbjct 1333 AAAAGAGTTCTGGCGATACTCCATTAACGAGCACGGTACTGAAGATATCCCAGCGATGAT 1392
Query 1427 AGAGAAGATTCACGAAATCAAAACTTCAGAACTGAAACTTTATCAGCCTACTATGGAAGA 1486
||| || ||||| ||||| |||||| ||||||| || || || ||||| | ||| || ||
Sbjct 1393 AGAAAAAATTCATGAAATAAAAACTACAGAACTCAAGCTCTACCAGCCCAATATCGATGA 1452
Query 1487 GGTAGTAA--A-CGAGGATCAACCGTATAAGCTTTGTGTTGTATCTCACAGTTTAGGCGG 1543
| || || | | |||| | || |||||||| |||| | | ||| ||| |||||||
Sbjct 1453 TGAAGAAAGCAACCAGGAGGAGCCTTATAAGCTCTGTGCCATCTGTCATAGTCTAGGCGG 1512
Query 1544 TGCCGCGGTTCTGATGTATGTAATCACCCGTAAAATCGAAG-AGAAACCGCACAGACTCT 1602
||| || ||||||||||||| || || || |||||| ||| |||| || ||||||||||
Sbjct 1513 TGCTGCAATTCTGATGTATGTTATTACTCGAAAAATC-AAGGAGAAGCCACACAGACTCT 1571
Query 1603 CGA-GACTGATCCTTCTTTCGCCTGCTGGGTTTCACT-ATGACTCCAACAT-GTGTTTCA 1659
| | |||| ||||| ||||| |||||||||||||| | | ||||| ||| | | ||||||
Sbjct 1572 C-ACGACTAATCCTACTTTCACCTGCTGGGTTTCA-TGAGGACTCGAACTTAG-GTTTCA 1628
Query 1660 CGTT-GATGGAGTACACGTTCCTTTTC-TTGGGTCCTGTACTATCTCGGATTGTTCCTGC 1717
| | | || |||||| ||||||||| || | ||| || | |||| || || |||||
Sbjct 1629 CAATAGTTG-AGTACATATTCCTTTTCATTAG-TCCAGTTTTGGCTCGCATCGTGCCTGC 1686
Query 1718 TTTCTACATCCCCACTAA-ATTCTTCCGGATGCTTCTCAACAAGTTAGCTCGAGA-TTTC 1775
|||||||| || || || ||||||| |||||||||| |||||||||||||| || ||||
Sbjct 1687 CTTCTACATACCGAC-AAGATTCTTCAGGATGCTTCTGAACAAGTTAGCTCGTGACTTTC 1745
Query 1776 CATAACTATCCTGCTGTTGGTGGATTAGTCCAAACAT-TGATGAGTTATGTAGTTGGCGG 1834
| |||||||||||| |||||||||| |||||||| | | ||||||||||||||||| ||
Sbjct 1746 -ACAACTATCCTGCTCTTGGTGGATTGGTCCAAAC-TCTAATGAGTTATGTAGTTGGTGG 1803
Query 1835 AGATAGCTCAAACTGGGTTGGAGTCATGGGATTGCCTCACTATAACATGAACGATATGCC 1894
||| ||||| || ||||| |||||| | ||||| |||||||| ||||||||||| |||||
Sbjct 1804 AGACAGCTCGAATTGGGTCGGAGTCCTAGGATTACCTCACTACAACATGAACGACATGCC 1863
Query 1895 AGGTATATCCTTCCGTGTGGCTCAGCATCTTGCACAGATTAAACATAGCGGTAAGTTCAA 1954
|| | | ||||| |||||||| || |||||||| ||||| ||||| |||||||| ||||
Sbjct 1864 AGCTGTCTCCTTTCGTGTGGCGCAACATCTTGCTCAGATCAAACACAGCGGTAAATTCAG 1923
Query 1955 GATGTTTGATTACGGTAGCAGTTCAGCTAATATGGATGTTTACGGGTCCCCTGAGCCGCT 2014
||||| |||||| || ||||| ||| |||| ||||| ||||| || || ||||| || ||
Sbjct 1924 GATGTATGATTATGGAAGCAGATCATCTAACATGGAGGTTTATGGCTCTCCTGAACCCCT 1983
Query 2015 CGATCTTGGGGAGTTTTATGGGTTGATCGATGTGCCTGTGGATTTAGTAGCTGGAAAGAA 2074
||||| ||||||| || ||| |||||||||||||||||||||||||| |||| |||
Sbjct 1984 TGATCTAGGGGAGTCCTACAAGTTCATCGATGTGCCTGTGGATTTAGTAGCGGGAAGGAA 2043
Query 2075 AGACAAAGTGATTAGACCTTCAATGGTTAGGAAACATTACAGGGTGATGAGAGATTCAGG 2134
||||| |||||| | |||| ||||| | |||||| |||| |||||||||||| | |
Sbjct 2044 TGACAAGGTGATTCGGTCTTCCATGGTGAAGAAACACTACAATGTGATGAGAGATGCCG- 2102
Query 2135 AG-TAGATGTTTC-TTACAATGAGTTTGAGTATGCTCAT-TTGGATTTTACCTTCTCTCA 2191
|| | ||||| || || |||||||||||||||||||| ||| |||| || ||||| ||
Sbjct 2103 AGGTCGATGTATCGTTT-AATGAGTTTGAGTATGCTCACCTTG-ATTTCACATTCTCCCA 2160
Query 2192 CCGTGAAGAGCTTTTG-GCGTATGTGATGTCGCGG 2225
||| |||||||||||| | ||||| |||||||||
Sbjct 2161 CCGCGAAGAGCTTTTGAGA-TATGTAATGTCGCGG 2194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92711656330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5