BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18470.1
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472066 jgi|Araly1|472066|fgenesh2_kg.1__2020__AT1G18470.1 2787 0.0
Ahg926773 jgi|Araly1|926773|scaffold_202334.1 1384 0.0
> Ahg472066 jgi|Araly1|472066|fgenesh2_kg.1__2020__AT1G18470.1
Length=1792
Score = 2787 bits (1509), Expect = 0.0
Identities = 1708/1801 (95%), Gaps = 26/1801 (1%)
Strand=Plus/Plus
Query 1 GGAAGGAGAAGAAGCAGGGGT-C--CATCATCAAATACAACATTGTAGCAATTGCGTTTT 57
||||||||||||||||||||| | |||||||||| ||||||||| ||||||||||||||
Sbjct 1 GGAAGGAGAAGAAGCAGGGGTCCATCATCATCAAAAACAACATTGCAGCAATTGCGTTTT 60
Query 58 CGACTTTATAGAGATATTTT--CATAGAGATGGTCTCGAAGCTAACAAGTTGACAAATTT 115
||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct 61 CGACTTT-CAGAGATATTTTCCCATAGAGATGGTTTCGAAGCTAACAAGTTGACAAA-TT 118
Query 116 CTTCGTT-----ATAAGAGAGATAGATGAGTTGCAGGAGAGTGCTGAAGTCGATACAAGC 170
||||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 119 CTTCGTTAAGAGATAAGAGAGAAAGATGAGTTGGAGGAGAGTGCTTAAGTCGATACAAGC 178
Query 171 CTTGGCGGCTCATAGTTTACTCTTCTGTTTCACGCTTTTATTGGTGCTTAAACTCGATCA 230
||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||
Sbjct 179 CTTGGCGGCTCATAGCTTACTCTTCTGTTTCACGCTCTTATTGGTGCTTAAGCTTGATCA 238
Query 231 CACCGTCTCTTCCTCATGGTGGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGT 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CACCGTCTCTTCCTCATGGTGGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGT 298
Query 291 TGCAAGGGGCAGATTCTCTCTTCCTGCTCCTGTTGCTCCACGTAACCGTCATTGGGCTCC 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGCAAGGGGCAGATTCTCTCTTCCTGCTCCTGTTGCTCCACGTAACCGTCATTGGGCTCC 358
Query 351 TTGCCATGCTGTTGTCGCGACACCGTTACTTGTAGCATTTGAATTACTCCTCTGTATATA 410
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 359 TTGCCATGCTGTTGTCGCGACACCGTTGCTAGTAGCATTCGAATTACTCCTCTGTATATA 418
Query 411 CCTCGAGAGTTCTTATGCTCGTTGGCCACCAGCTGTCAGTTTGAAGATTGC-TTTCTTAC 469
|||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| | ||
Sbjct 419 CCTCGAGAGTTCTTATGCTCGTTGGCCACCAGCTGTGAGTCTGAAGATTGCATTTGT-AC 477
Query 470 CATTGTTGGCTTTTGAATTAACAATACTGGTAGACAATTTGAGAATGTGTCGAGCATTGA 529
| || ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 478 CGTTATTGGCATTTGAATTAACGATACTGGTGGACAATTTGAGAATGTGTCGAGCATTGA 537
Query 530 TGCCAGGAGACGACGACAGCATAACTGATGATGCAATATGGGAGGCACTTCCTCATTTCT 589
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGCCAGGCGACGACGACAGCATAACTGATGATGCAATATGGGAGGCACTTCCTCATTTCT 597
Query 590 GGGTTGCAATTTCCATGGTGTTCACGTTGGCTGCTACGTTCTTTACCCTCCTAAAGCTTT 649
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 598 GGGTTGCAATTTCCATGGTGTTCACGTTGGCTGCTACGTTTTTTACCCTCCTAAAACTTT 657
Query 650 CTGGCGACGTAGTTGCTCTTGGATGGTGGGATCTATTCATAAATTTTGGAATTGCCGAGT 709
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 658 CTGGCGATGTAGTTGCTCTTGGATGGTGGGATTTATTCATAAATTTTGGAATTGCCGAGT 717
Query 710 GCTTTGCTTTTCTTGTTTGCACAAAATGGTCCAATCCAGTAATCCATAGAAGCTCACGTG 769
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 718 GCTTTGCTTTTCTTGTTTGCACAAAATGGTCCAACCCAGTAATCCATAGAAGCTCACGTG 777
Query 770 CCCGAGAAACCGGGTCATCTTCTACCAGTATCAGATATCTTGACTGGAACAGCGGCCTTG 829
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 778 CCCGAGAAACCGGGTCATCTTCTACCACTATCAGATATCTTGACTGGAACAGTGGCCTTG 837
Query 830 TGGTTGCTCCAGAAGAGGATAGACACCAAGATAGATGGTGCGGTTTGCAAGATATTGGTG 889
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 838 TGGTTGCTCCAGAAGAGGATAGGCACCAAGATAGATGGTGCGGTTTGCAAGATATTGGTG 897
Query 890 GTCATATGTTAAAAATTCCCGTTATTTTATTTCAAGTTGTCCTTTGCATGTATTTAGAGG 949
|||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||
Sbjct 898 GTCATATGTTAAAAATTCCCGTTATTGTATTTCAAGTTGTTCTTTGCATGTATCTAGAGG 957
Query 950 GGACTCCTGAAAGAGCTAAGGATATATCGATCCCAGTACTGTTTTCTCCACTATTCCTAT 1009
|||||||||||||||||||||||||||| || ||| |||| || ||||||||||||||||
Sbjct 958 GGACTCCTGAAAGAGCTAAGGATATATCCATTCCATTACTCTTCTCTCCACTATTCCTAT 1017
Query 1010 TGCAAGGCCTCGGTGTTCTCTTTGCTGCTTCTAAACTCCTAGAGAAGATCGTCCTCTTAC 1069
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1018 TGCAAGGCCTCGGTGTTCTCTTTGCTGCTTCTAAACTCATAGAGAAGATCGTTCTCTTAC 1077
Query 1070 TCCGCGGGGAAGCTGGTCCGGGATTGTATTTTAGATTTTCATCAAGTGCCCATGATTGCT 1129
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGCGCGGGGAAGCTGGTCCAGGATTGTATTTTAGATTTTCATCAAGTGCCCATGATTGCT 1137
Query 1130 TGGGATTCTTGCACCATGGTTCCAGGCTATTAGGTTGGTGGTCAATTGACGAAGGAAGCC 1189
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1138 TGGGATTTTTGCACCATGGTTCCAGGCTATTAGGTTGGTGGTCGATTGACGAAGGAAGCC 1197
Query 1190 GGGAGGAACAAGCTCGACTGTACTTTGATCAAGAATCTGGTTACAATACATTCAGTGGTC 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GGGAGGAACAAGCTCGACTGTACTTTGATCAAGAATCTGGTTACAATACATTCAGTGGTC 1257
Query 1250 ATCCGCCTGAGATAGTCAAGAAAATGCCAAAGGAAGATCTTGCAGAAGAGGTGTGGAGAC 1309
||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1258 ATCCGCCTGAGGTAGTCAAGAAAATGCCAAAGGAAGATCTTGCTGAAGAGGTATGGAGAC 1317
Query 1310 TTCAAGCAGCACTTGGTGAACAAACAGAAATCACAAAATTCAGCCAGCAGGAATATGAAA 1369
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 1318 TTCAAGCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGCCAACAAGAATATGAAA 1377
Query 1370 GACTGCAAAATGAGAAAGTGCTGTGTAGGGTTTGCTTTGAAAAAGATATCAGTTTGGTAC 1429
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1378 GACTGCAAAATGAGAAAGTGCTGTGTAGGGTTTGCTTTGAAAAAGAAATCAGTTTGGTAC 1437
Query 1430 TGCTTCCATGTAGACACCGTGTTCTCTGCAGAACCTGTGCAGACAAGTGTACAACATGTC 1489
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 1438 TGCTTCCATGTAGACACCGTGTTCTCTGCAGAGTCTGTGCAGACAAGTGTACAACGTGCC 1497
Query 1490 CAATATGTCGTATAGACATTGAAAAACGACTATCTGTATACGACGTATGACTGTGTTAAC 1549
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1498 CAATATGTCGTATAGACATTGAAAAACGACTATCTGTATACGACGTTTGACTGTGTTAAC 1557
Query 1550 TTTGGCCCATGATCAAGAGTAGGATTTGTGGTTGATGCTCCAGACAAACATTCCAGTTTA 1609
||||||||||| || ||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1558 TTTGGCCCATGTTCGAGAGTAGGATTTGAGGTTGATGCTCCAGACAAACATTCCATTTTA 1617
Query 1610 CCAACCATACTGTTTCCCAAACTTCTGATGTTTTTGCTGAATCTTTTTGTTTGTCTGAAT 1669
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1618 CCA----TACTGTTTCCCAAACTTCTGATGTTTTTGCTGAATCTTTTTATTTGTCTGAAT 1673
Query 1670 CAGCAGCTAGTATaaaaaaaaGTATAGGTGTATACGT----GTAT--GTATTTTTCTGTA 1723
||||| | ||||||||||| |||||||||||||| | |||| |||||||||||||
Sbjct 1674 CAGCATCAAGTATAAAAAA--GTATAGGTGTATACATATATGTATATGTATTTTTCTGTA 1731
Query 1724 GGAAACCTCATTCAAACTTTAGCTGTAACATACAAAGTTTGTATAATATCCATCTCTTTT 1783
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 GAAAACCTCATACAAACTTTAGCTGTAACATACAAAGTTTGTATAATATCCATCTCTTTT 1791
Query 1784 T 1784
|
Sbjct 1792 T 1792
> Ahg926773 jgi|Araly1|926773|scaffold_202334.1
Length=1446
Score = 1384 bits (749), Expect = 0.0
Identities = 1177/1383 (85%), Gaps = 32/1383 (2%)
Strand=Plus/Plus
Query 146 GGAGAGTGCTGAAGT-CGATACAAGCCTTGGCGGCTCA-TAG-TTTACTCTTCTGTTTCA 202
|||||||| |||| | || ||||||||||| |||||| | | ||| ||||||| |||||
Sbjct 33 GGAGAGTGTTGAAATCCG-CACAAGCCTTGGTGGCTCACT-GCTTT-CTCTTCTCTTTCA 89
Query 203 CGCT-TTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTGGATGGTGTTT 261
|||| | ||| |||| || ||||| ||| || | |||| ||| |||||| | |||| |
Sbjct 90 CGCTCGCT-TTGATGCTCAAGCTCGACCACTCCCTGTCTTACTCCTGGTGGGTTGTGTGT 148
Query 262 TTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAGATTCTCTCTTCCTGCTCCT 321
|| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 149 TTACCACTGTGGGCTTTTCATGCTGTTGTTGCAAGGGGAAGATTCTCTCTTCCTGCTCCA 208
Query 322 GTTGCTCCACGTAACCGTCATTGGGCTCCTTGCCATGCTGTTGTCGCGACACCGTTACTT 381
| || || |||||||||||||||||||| || |||||| ||||| | |||||||| |||
Sbjct 209 ATCGCCCCTCGTAACCGTCATTGGGCTCCATGTCATGCTATTGTCTCAACACCGTTGCTT 268
Query 382 GTAGCATTT-GAATTACTCCTCTGTATATACCTCGAGAGTTCTTATGCTCG-TTGGCCAC 439
|||| ||| ||||| || |||||| |||||||||||| | | |||||| | || ||| |
Sbjct 269 ATAGC-TTTCGAATTGCTTCTCTGTGTATACCTCGAGACTGCATATGCT-GATTCGCCGC 326
Query 440 CAGCTGTCAGTTTGAAGATTG-CTTTCTTACCATTGTTGGCTTTTGAATTAACAATACTG 498
||||||| || |||||||||| |||| | || || ||||| |||||| ||| |||||||
Sbjct 327 CAGCTGTGAGCTTGAAGATTGTGTTTC-TCCCTTTATTGGCATTTGAAGTAATAATACTG 385
Query 499 GTAGACAATTTGAGAATGTGTCGAGCATTGATGCCAGGAGACGACGACAGCAT-AACTGA 557
|| |||||| ||||||||||| ||| ||||||| ||||| || || ||| | || |||
Sbjct 386 GTGGACAATGCCAGAATGTGTCGGGCACTGATGCCTGGAGATGAAGAGAGCGTGAA-TGA 444
Query 558 TGATGCAATATGGGAGGCACTTCCTCATTTCTGGGTTGCAATTTCCATGGTGTTCACGT- 616
||| ||| ||||||| || |||||||||||||||||||| ||||||||||||||| |
Sbjct 445 TGAAGCAGTATGGGAAGCTCTTCCTCATTTCTGGGTTGCGATTTCCATGGTGTTC-TTTC 503
Query 617 TGGCTGCTAC-GTTCTTTACCCTCCTAAAGCTTTCTGGCGACGTAGTTGCTCTTGGATGG 675
|||||||||| | ||||||||||| ||||||| |||||||| |||| ||||||||| |||
Sbjct 504 TGGCTGCTACAG-TCTTTACCCTCTTAAAGCTGTCTGGCGATGTAGCTGCTCTTGGCTGG 562
Query 676 TGGGATCTATTCATAAATTTTGGAATTGCCGAGTGCTTTGCTTTTCTTGTTTGCACAAAA 735
|||||| ||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 563 TGGGATTTATTCATTAATTTCGGAATTGCAGAGTGCTTTGCTTTTCTTGTTTGTACAAAA 622
Query 736 TGGTCCAATCCAGTAATCCATAGAAGCTCACGTGCCCGAGAAACCGGGTCATCTTCTACC 795
||||| ||||||||||| ||||||||||||| || |||||||||||||||||||| ||
Sbjct 623 TGGTCTAATCCAGTAATTCATAGAAGCTCACATGATAGAGAAACCGGGTCATCTTCTTCC 682
Query 796 AGTATCAGATATCTTGACTGGAACAGCGGCCTTGTGGTTGCTCCAGAAGAGGATA-GACA 854
| ||| |||||||||||||||||||| ||||||| |||| | | ||||| |||| || |
Sbjct 683 AATATTAGATATCTTGACTGGAACAGTGGCCTTGGGGTTTTTTCGGAAGACGATAGGA-A 741
Query 855 CCAAGATAGATGGTGCGGTTTGCAAGA-TATTGGTGGTCATATGTTAAAAATTCCCGTTA 913
|||||||| | || || ||||||| | ||||||||||||| | ||||||||| | |
Sbjct 742 CCAAGATACAACATGTGGCCTGCAAGACT-TTGGTGGTCATATAATGAAAATTCCCCTCA 800
Query 914 TTTTATTTCAAGTTGTCCTTTGCATGTATTTAGAGGGGACTCCTGAAAG-AGCTAAGGAT 972
|| |||||||||| || ||||||||| || ||||||||||||||| ||| |||||| ||
Sbjct 801 TTGTATTTCAAGTGGTACTTTGCATGCATCTAGAGGGGACTCCTG-AAGCTGCTAAGTAT 859
Query 973 ATATC-GATCCCAGTACTGTTTTCTCCACTATTCCTATTGCAAGGCCTCGGTGTTCTCTT 1031
||| | | |||| || |||||||||||||| ||||||||||||||| | |||||||| ||
Sbjct 860 ATACCTG-TCCCTGTTCTGTTTTCTCCACTTTTCCTATTGCAAGGCGTTGGTGTTCTATT 918
Query 1032 TGCTGCTTCTAAACTCCTAGAGAAGATCGTCCTCTTACTCCGCGGGGAAGCTGGTCCGGG 1091
||||||||||||| | |||||||| | || || ||| | ||||| |||| || | ||
Sbjct 919 TGCTGCTTCTAAATTAATAGAGAAGGTTGTTCTATTAATGCGCGGTGAAGATGAAGCAGG 978
Query 1092 ATTGTATTTTAGATTTTCATCAAGTGCCCATGATTGCTTGGGATTCTTGCACCATGGTTC 1151
||| ||||||||||||||||| | ||||||||||||||||| |||||||||||||| ||
Sbjct 979 ATTATATTTTAGATTTTCATCGACAGCCCATGATTGCTTGGGTTTCTTGCACCATGGATC 1038
Query 1152 CAGGCTATTAGGTTGGTGGTCAATTGACGAAGGAAGCCGGGAGGAACAAGCTCGACTGTA 1211
||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1039 CAGGCTACTAGGTTGGTGGTCAATTGATGAAGGAAGCCGGGAGGAGCAAGCTCGACTATA 1098
Query 1212 CTTTGATCAAGAATCTGGTTACAATACATTCAGTGGTCATCCGCCTGAGATAGTCAAGAA 1271
|||||||||||| |||||||||||||| ||| |||||||||| ||||| |||||||||||
Sbjct 1099 CTTTGATCAAGACTCTGGTTACAATACCTTCTGTGGTCATCCTCCTGAAATAGTCAAGAA 1158
Query 1272 AATGCCAAAGGAAGATCTTGCAGAAGAGGTGTGGAGACTTCAAGCAGCACTTGGTGAACA 1331
|||||| ||| |||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1159 AATGCCGAAGAAAGAGCTTGCTGAGGAGGTGTGGAGACTTCAAGCAGCACTTGGTGAACA 1218
Query 1332 AACAGAAATCACAAAATTCAGCCAGCAGGAATATGAAAGACTGCAAAATGAGAAAGTGCT 1391
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1219 AACAGAAATCACGAAATTCAGCCAGCAGGAATATGAGAGACTGCAAAATGAGAAAGTGCT 1278
Query 1392 GTGTAGGGTTTGCTTTGAAAAAGATATCAGT-TTGGTACTGCTTCCATGTAGACACCGTG 1450
||||||||| || ||||||| ||| |||||| ||| |||||||||||||||||||||| |
Sbjct 1279 GTGTAGGGTATGTTTTGAAAGAGAAATCAGTGTTG-TACTGCTTCCATGTAGACACCGAG 1337
Query 1451 TTCTCTGCAGAACCTG-TGCAGACAAGTGTACAACATGTCCAATATGTCGTATAGACATT 1509
| |||||||||| ||| | |||||||||||| || |||||| | || |||||| ||||
Sbjct 1338 TCCTCTGCAGAAACTGCT-CAGACAAGTGTAAAAAATGTCCTTTCTGCCGTATAAACATC 1396
Query 1510 GAA 1512
|||
Sbjct 1397 GAA 1399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68143448305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5