BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18480.1
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472067 jgi|Araly1|472067|fgenesh2_kg.1__2021__AT1G18480.1 1840 0.0
> Ahg472067 jgi|Araly1|472067|fgenesh2_kg.1__2021__AT1G18480.1
Length=1203
Score = 1840 bits (996), Expect = 0.0
Identities = 1131/1197 (94%), Gaps = 5/1197 (0%)
Strand=Plus/Plus
Query 1 ATCACGGAAAATGTCAAGCAGAGAAAACCCTAGCGGAATCTGCAA-AAGCATTCCCAAGC 59
||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 1 ATCCCGGAAAATGTCAAGCAGAGAAAACCCTAGCGGAATCTGCAACAA-CATTCCCAATC 59
Query 60 TCATCTCTTCCTTCGTCGACACTTTCGTTGATTACTCCGTCTCCGGCATCTTCCTGCCCC 119
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 60 TCATCTCTTCTTTCGTCGACACTTTCGTTGATTACTCCGTCTCCGGCATCTTCTTGCCTC 119
Query 120 AAGATCCTAGCTCACAAAATGAGATTCTGCAAACGAGGTTCGAGAAGCCGGAGCGACTCG 179
||||||||||| |||| ||||| |||||||||||||||||| | || |||||||||||||
Sbjct 120 AAGATCCTAGCCCACAGAATGATATTCTGCAAACGAGGTTCCACAAACCGGAGCGACTCG 179
Query 180 TTGCAATCGGTGATCTCCATGGCGATCTCGAGAAGTCTAGAGAAGCATTCAAGATCGCTG 239
||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 TTGCAGTCGGCGATCTCCATGGCGATCTCGACAAGTCTAGAGAAGCATTCAAGATCGCTG 239
Query 240 GTCTGATTGATTCGTCGGACAGATGGACTGGTGGATCAACGATGGTTGTTCAGGTGGGCG 299
| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 240 GACTGATTGATTCGTCGGACCGATGGACTGGTGGATCCACGATGGTTGTTCAGGTGGGAG 299
Query 300 ACGTACTAGATCGAGGTGGAGAGGAGTTGAAGATACTTTATTTCTTAGAGAAATTGAAAC 359
||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 300 ACGTACTGGATCGAGGAGGAGAGGAGTTAAAGATTCTTTATTTCTTAGAGAAATTGAAAC 359
Query 360 GAGAGGCTGAGAGAGCTGGAGGTAAGATTCTGACTATGAATGGGAACCATGAGATCATGA 419
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 360 GAGAGGCTGAGAGAGCTGGAGGTAAGGTTCTGACTATGAATGGCAACCATGAGATCATGA 419
Query 420 ATATAGAAGGTGACTTTAGATATGTGACTAAGAAAGGTTTAGAGGAATTTCAGATTTGGG 479
||||||||||||||||| |||||||||| ||||| |||||||||||||||||| ||||||
Sbjct 420 ATATAGAAGGTGACTTTCGATATGTGACCAAGAAGGGTTTAGAGGAATTTCAGGTTTGGG 479
Query 480 CTGATTGGTATTGTTTAGGGAACAAGATGAAGACTTTATGCAGTGGTCTTGATAAACCTA 539
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 CTGATTGGTATTGTCTAGGGAACAAGATGAAGACTTTATGCAAAGGTCTTGATAAACCTA 539
Query 540 AGGATCCTTACGAAGGGATTCCGATGAGCTTCCCTCGTATGAGAGCCGACTGTTTTGAAG 599
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 540 AGGATCCTTATGAAGGGATTCCGATGAGCTTCCCTCGTATGAGAGCCGACTGTTTTGACG 599
Query 600 GAATTAGAGCTAGGATTGCTGCATTGAGACCTGATGGTCCGATTGCAAAGAGATTCTTGA 659
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 600 GAATTAGAGCTAGGATTGCTGCATTGAGACCTGAAGGTCCGATTGCAAAGAGATTCTTGA 659
Query 660 CTAAGAATCAAACAGTTGCTGTTGTTGGTGATTCGGTTTTTGTTCACGGTGGTCTTTTAG 719
|||||||||||||||||||||||||||||||||| || |||||||| || || |||||||
Sbjct 660 CTAAGAATCAAACAGTTGCTGTTGTTGGTGATTCTGTGTTTGTTCATGGGGGACTTTTAG 719
Query 720 CTGAGCATATAGAGTATGGACTGGAGAGGATTAACGAGGAGGTTCGGGGTTGGATTAACG 779
| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 720 CGGAGCACATAGAGTATGGACTGGAGAGGATAAACGAGGAGGTTAGGGGTTGGATTAACG 779
Query 780 GGTTTAAAGGAGGAAGATATGCGCCTGCT-TATTGTAGAGGAGGGAACTCTGTAGTTTGG 838
|||| |||| |||| |||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 780 GGTTGAAAGAAGGACGATATGCGCCTG-TGTATTGTAGAGGAGGAAACTCTGTAGTTTGG 838
Query 839 TTGAGGAAGTTCTCGGAAGAAATGGCTCACAAATGTGATTGTGCAGCTCTTGAGCATGCT 898
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTGAGGAAATTCTCGGAAGAGATGGCTCACAAATGTGATTGTGCAGCTCTTGAGCATGCT 898
Query 899 CTTTCCACTATTCCCGGGGTTAAGAGGATGATCATGGGACATACAATCCAGGATGCTGGT 958
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 899 CTTTCCACTATTCCCGGGGTTAAGAGGATGATCATGGGACACACAATCCAGGATGCTGGT 958
Query 959 ATCAACGGTGTTTGTAATGATAAAGCCATTAGGATTGATGTTGGCATGTCCAAGGGATGT 1018
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 959 ATCAACGGTGTTTGTAATGATAAAGCCATTAGGATTGATGTGGGCATGTCCAAGGGATGT 1018
Query 1019 GCTGATGGATTGCCTGAGGTTTTGGAGATCCGCAGGGACTCCGGTGTACGGATAGTGACA 1078
||||| ||| |||||||||||||||| |||||||||||||| ||||| |||||| |||||
Sbjct 1019 GCTGACGGACTGCCTGAGGTTTTGGAAATCCGCAGGGACTCGGGTGTGCGGATATTGACA 1078
Query 1079 TCGAATCCATTGTATAAGGAGAATCTGTATTCTCATGTAGCTCCTGATAGTAAAACGGGT 1138
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1079 TCGAATCCATTGTATAAGGAGAATCCGTATTCTCATTTAGCTCCTGATAGTAAAACGGGT 1138
Query 1139 CTCGGGTTACTGGTACCAGTTCCTAAGCAAGTTGAAGTCAAAGCTTGAAGAC-TTTT 1194
|||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1139 CTCGGGTTGCTGGTACCAGTTCCTAAGCAAGTGGAAGTCAAAGCTTGAAGACCTTTT 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51618429618
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5