BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18490.1
Length=1654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472069 jgi|Araly1|472069|fgenesh2_kg.1__2023__AT1G18490.1 1653 0.0
Ahg943461 jgi|Araly1|943461|scaffold_604005.1 316 2e-85
> Ahg472069 jgi|Araly1|472069|fgenesh2_kg.1__2023__AT1G18490.1
Length=1441
Score = 1653 bits (895), Expect = 0.0
Identities = 1007/1060 (95%), Gaps = 11/1060 (1%)
Strand=Plus/Plus
Query 510 CCCACTAAACTCATAGGTTAATCACTCTCGGATAAGAACATTCGAACAATTACCGACACA 569
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 386 CCCACTTAACTCATAGGTCAATCAGTCTCGGATAAGAACATTCGAACAATTACCGACACA 445
Query 570 CAAAAAGTTTGAAGAGaaaaa-caaa-aa-aTGTTGTCGAGATTGTTCAAGGCAGGTGAA 626
|||||| |||||||| ||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 446 CAAAAACTTTGAAGAAAAAAAGAAAAGAATATGTTGTCGAGATTGTTCAAGGCAGGTGAA 505
Query 627 AAGGTTTTGTCGAATCTCGTTAGCAAGAAAGACATTTACATGGCGTCGAGGAATCAGGAG 686
|||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 506 AAGGTTTTGTTGAATCTCGTTAGCAAGAAAGACCTTCACATGGCGTCGAGGAATCAGGAG 565
Query 687 AAATCTCCCAAAGTGCAAGAGCTTTACGACCTCTGCAAAGAGACTTTCACTGGCAAAGCT 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 AAATCTCCCAAAGTGCAAGAGCTTTACGACCTCTGCAAAGAGACTTTCACTGGCAAAGCT 625
Query 747 CCTTCTCCTGCTTCCATGGCTATCCAAAAGCTATGCTCTGTGTTGGACTCAGTTAGTCCT 806
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 626 CCTTCTCCTGCTTCCATGGCTGTCCAAAAACTATGCTCTGTGTTGGACTCAGTTAGTCCT 685
Query 807 GCAGATGTTGGGCTTGAAGAGGTATCTCAAGACGATGATCGAGGCTATGGAGTTTCTGGG 866
||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 686 GCAGATGTTGGGCTTCAAGAGGTATCTCAAGACGACGATCGAGGCTACGGAGTTTCTGGG 745
Query 867 GTTAGCCGTTTCAATAGAGTAGGACGATGGGCACAACCGATAACATTCTTAGACATTCAT 926
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 GTTAGCCGTTTCAACAGAGTAGGACGATGGGCACAACCGATAACATTCTTAGACATTCAT 805
Query 927 GAATGTGATACTTTTACAATGTGTATTTTCTGCTTCCCAACGTCTTCAGTGATCCCATTG 986
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 806 GAATGTGATACTTTTACAATGTGTATTTTCTGCTTCCCAACATCTTCAGTGATTCCATTG 865
Query 987 CATGATCATCCAGAGATGGCTGTGTTTAGTAAAATCCTCTATGGATCACTTCATGTTAAA 1046
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 866 CATGACCATCCAGAGATGGCTGTGTTTAGCAAAATCCTCTATGGATCACTTCATGTTAAA 925
Query 1047 GCTTACGATTGGGTCGAACCTCCATGTATTATCACACAAGATAAAGGCGTCCCCGGTTCT 1106
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 926 GCTTACGATTGGGTTGAACCTCCATGTATTATCACACAAGATAAAGGCGTGCCCGGTTCT 985
Query 1107 CTTCCAGCAAGGTTGGCGAAATTGGTGAGTGACAAAGTTATAACGCCTCAGTCTGAGATA 1166
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 986 CTTCCAGCAAGGTTGGCCAAATTGGTGAGTGACAAAGTTATTACGCCTCAGTCTGAGATA 1045
Query 1167 CCGGCGTTGTACCCAAAGACTGGAGGCAATCTCCATTGCTTCACTGCGTTGACTCCATGT 1226
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1046 CCGGTGTTGTACCCAAAGACTGGAGGCAATCTCCATTGCTTCACTGCACTGACTCCATGT 1105
Query 1227 GCTGTGCTCGACATTCTCTCACCTCCTTACAAAGAAAGTGTTGGCAGGAGTTGCAGTTAC 1286
|| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 GCGGTGCTCGACATCCTCACACCTCCTTACAAAGAAAGTGTTGGCAGGAGTTGCAGTTAT 1165
Query 1287 TACATGGACTATCCGTTTTCCACTTTCGCATTGGAG-AACGGAATGAAGAAGGTGGATGA 1345
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 1166 TACATGGACTATCCGTTTTCCACTTTCGCATTGGAGGAA-GGAATGAAGAAGGTGGA--A 1222
Query 1346 AGGAAAGGAAGACGAATACGCATGGCTTGTACAGATTGACACGCCCGATGATCTTCACAT 1405
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1223 -GGAAAGGAAGACGAATACGCTTGGCTTGTACAGATTGACACACCCGATGATCTTCACAT 1281
Query 1406 GCGTCCCGGATCATATACTGGTCCAACTATCAGAGTCTAGATATTTGTGGTTTGTTTTGT 1465
||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||||||
Sbjct 1282 GCGTCCCGGATCATATACTGGTCCAACTATCAGGGTCTAGATTTTTGCGGTTGGTTTTGT 1341
Query 1466 AGCAAAGTAGAGCAACTCTTGTAACATTCCAAGATAAGTTTCTGGAGAAGATATCAA--T 1523
||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1342 AGCGACGTAGAGCAACTCTTGTATCATTCCAAGATAAGTTTCTGGAGAAGATATCAAAAT 1401
Query 1524 ACGA-TTTCAGATTAAAGATGAACTCTTTGTTTAGTCCAT 1562
|| | |||||||| |||||||||||||||| |||||||||
Sbjct 1402 ACAAATTTCAGATGAAAGATGAACTCTTTGATTAGTCCAT 1441
Score = 207 bits (112), Expect = 2e-52
Identities = 170/195 (87%), Gaps = 16/195 (8%)
Strand=Plus/Plus
Query 1 TCTTCACTCGAACCCAAGACATCAAAGTTCGACTTTCTTGTGGACAAGTTGTGCAGA--G 58
||||||||| ||| |||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 1 TCTTCACTCTAACTCAAGACATCAAAGTACGACTTTCTTGTGGACAAGTTGTGTAGAGCG 60
Query 59 -ACATGGCTCGTGCCGTCATGTTCTCTGTGAGGATAACCGGAAAATTCCCATCTCACTAT 117
| |||||||||||||||||| |||||||||||||||||| | | |||||
Sbjct 61 TA-ATGGCTCGTGCCGTCATGGCCTCTGTGAGGATAACCGG---A-----A----ACTAT 107
Query 118 GTGAAGGCGATGTGTAATGTGTTTGGAAATGACGAGAAGAAAGTGAAAGAGTATGTTGTG 177
|| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 108 GTTAAGGCGATGTGTAATGTGTTTGGAAATGATGAGAAGAAAGTGAAAGGGTATGTTGTG 167
Query 178 AAGAAATGGTTGGGA 192
|||||||||||||||
Sbjct 168 AAGAAATGGTTGGGA 182
Score = 128 bits (69), Expect = 1e-28
Identities = 96/107 (90%), Gaps = 9/107 (8%)
Strand=Plus/Plus
Query 244 ATTGTCTTTA--G-T-GA-TATTAGTCTATTAACAATTAGCTAAGGTTTTCATCCG-AAA 297
|||||||||| | | || ||||||||||||||||||||||||||||||||||| | |||
Sbjct 182 ATTGTCTTTAGTGATAGAGTATTAGTCTATTAACAATTAGCTAAGGTTTTCATCGGTAAA 241
Query 298 GTC-AAAAAGATTATGCAAATTAAAACGACAC-AATTAGTAAAGAAA 342
||| |||||||||||||||||||||||||| | |||||||||| |||
Sbjct 242 GTCAAAAAAGATTATGCAAATTAAAACGAC-CGAATTAGTAAAAAAA 287
> Ahg943461 jgi|Araly1|943461|scaffold_604005.1
Length=403
Score = 316 bits (171), Expect = 2e-85
Identities = 214/235 (91%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 1 TCTTCACTCGAACCCAAGACATCAAAGTTCGACTTTCTT-GTGGACAAGTTGTGCAGAGA 59
||||||||||||| |||||| |||| ||||||| |||| | |||||| |||||||||||
Sbjct 150 TCTTCACTCGAACACAAGACGTCAATCTTCGACTCTCTTAG-GGACAATTTGTGCAGAGA 208
Query 60 CATGGCTCGTGCCGTCATGTTCTCTGTGAGGATAACCGGAAAATTCCCATCTCACTATGT 119
||||||||||||||||||||||| |||||||||||||||||| || ||| ||||||||||
Sbjct 209 CATGGCTCGTGCCGTCATGTTCTATGTGAGGATAACCGGAAAGTTTCCAGCTCACTATGT 268
Query 120 GAAGGCGATGTGTAATGTGTTTGGAAATGACGAGAAGAAAGTGAAAGAGTATGTTGTGAA 179
||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
Sbjct 269 TAAGGCGATGTGTAATGTGTTTGGAAATGATGAGAAGAAAGTGAAAGAGTATGTTATGGA 328
Query 180 GAAATGGTTGGGAGGTTCGAAGCTCGTGTCTAGTTTATCTTGTGCTTTTCATTGA 234
|||||||||||||||||||| ||| |||||| | ||||||||||||||||||||
Sbjct 329 TAAATGGTTGGGAGGTTCGAAACTCCTGTCTAATGTATCTTGTGCTTTTCATTGA 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62010918860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5