BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18500.1
Length=2060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472070 jgi|Araly1|472070|fgenesh2_kg.1__2024__AT1G18500.1 3253 0.0
Ahg476544 jgi|Araly1|476544|fgenesh2_kg.2__1674__AT1G74040.1 865 0.0
> Ahg472070 jgi|Araly1|472070|fgenesh2_kg.1__2024__AT1G18500.1
Length=2054
Score = 3253 bits (1761), Expect = 0.0
Identities = 1946/2036 (96%), Gaps = 9/2036 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCTTCGCTTCTGAGAAACCCTAATCTCTACTCATCAACAACAATCACCACCACT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCTTCGCTTCTGAGAAACCCTAACCTCTACTCATCAACAACAATCACCACCACT 60
Query 61 TCTTTTCTTCCCACCTTCTCCTCTAAACCCACACCTATCTCCTCCTCTTTCCGTTTCCAA 120
||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||
Sbjct 61 CCTTTTCTTCCCACCTTCTCCTCTAAACCCACACCTGTCTCCT-C-C-TTCCGTTTCCAA 117
Query 121 CCATCTCACCACCGTTCAATCTCCCTCCGAAGTCAAACCCTCCGTCTCTCATGCTCAATC 180
||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 118 CCATCCCACCACCGTTCAATCTCCCTCCGAACTCAAGCCCTCCGTCTCTCATGCTCAATC 177
Query 181 TCAGATCCTTCTCCACTACCACCTCACACTCCTCGCCGTCC-CCGTCCTGAATACATCCC 239
|||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 178 TCAGATCCTTCTCCACTACCACCTCACACTCCTCGCCG-CCGCCGCCCTGAATACATCCC 236
Query 240 CAACCGCATTTCCGATCCAAACTACGTCCGCGTCTTCGATACTACTCTCCGTGACGGTGA 299
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 237 TAACCGCATTTCCGATCCAAACTACGTCCGTGTCTTCGATACAACTCTCCGTGACGGTGA 296
Query 300 ACAATCTCCAGGAGCTACACTTACTTCCAAGGAAAAACTTGACATCGCTCGTCAGCTAGC 359
||| |||||||| |||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 297 ACAGTCTCCAGGCGCTACACTCACTTCCAAGGAAAAGCTCGACATCGCTCGTCAGCTAGC 356
Query 360 TAAACTTGGTGTTGACATCATCGAGGCTGGGTTTCCTGCTGCTTCCAAGGATGATTTTGA 419
|||||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 357 TAAACTCGGTGTTGACATTATCGAAGCTGGGTTTCCAGCTGCTTCTAAGGATGATTTTGA 416
Query 420 AGCGGTTAAGACTATAGCTGAAACAGTTGGAAACACTGTTGATGAGAATGGTTATGTTCC 479
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 417 AGCGGTTAAGACTATAGCTGAAACAATTGGAAACACTGTTGATGAGAATGGTTATGTTCC 476
Query 480 TGTTATCTGTGGACTCTCTAGATGCAATAAGAAGGATATTGAGAGAGCTTGGGATGCTGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGTTATCTGTGGACTCTCTAGATGCAATAAGAAGGATATTGAGAGAGCTTGGGATGCTGT 536
Query 540 GAAATACGCTAAACGGCCTAGGATTCATACTTTTATAGCTACTAGTGATATACATTTGGA 599
||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 537 CAAATACGCTAAACGGCCTAGGATTCATACTTTTATCGCTACGAGTGATATTCATTTGGA 596
Query 600 GTATAAACTAAAGAAAACCAAAGCAGAGGTCATCGAAATCGCTAGGAGTATGGTTAGATT 659
| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 597 GCATAAACTGAAGAAAACCAAAGCAGAGGTCATCGAAATCGCTAGGAATATGGTTAGATT 656
Query 660 CGCGAGGAGCTTGGGGTGCGAAGATGTTGAGTTCAGTCCAGAAGATGCAGGAAGATCGGA 719
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 657 CGCGAGGAGCTTGGGTTGCGAAGATGTCGAGTTCAGTCCAGAAGATGCAGGAAGATCGGA 716
Query 720 GAGAGAGTACTTATACGAGATTCTTGGTGAAGTGATAAAAGCAGGAGCAACAACTCTCAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 717 GAGAGAGTACTTATACGAGATTCTTGGTGAAGTGATAAAAGCAGGAGCAACTACACTCAA 776
Query 780 CATACCTGATACTGTTGGTATAACTTTGCCTAGTGAGTTTGGTCAACTGATTACTGATTT 839
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 777 CATACCTGATACTGTTGGTATAACTTTGCCTAGTGAGTTTGGTCAATTGATTACTGATTT 836
Query 840 AAAGGCCAATACTCCGGGGATTGAAAATGTTGTCATCTCAACACATTGTCAGAATGATCT 899
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AAAGGCCAATACTCCAGGGATTGAAAATGTTGTCATCTCAACACATTGTCAGAATGATCT 896
Query 900 TGGACTCTCTACGGCCAACACTTTATCTGGGGCACATGCAGGTGCGAGGCAGATGGAAGT 959
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 897 TGGACTCTCTACGGCCAACACTTTATCTGGGGCACATGCAGGTGCCAGGCAGGTGGAAGT 956
Query 960 GACGATCAATGGAATTGGTGAAAGAGCTGGAAACGCTTCACTGGAAGAGGTTGTGATGGC 1019
||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 957 GACTATCAATGGAATCGGGGAAAGAGCTGGAAATGCTTCACTGGAAGAGGTTGTGATGGC 1016
Query 1020 CATAAAATGCCGTGGAGATCATGTATTAGGAGGTCTATTTACCGGAATTGATACTCGGCA 1079
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1017 CATAAAATGCCGTGGAGATCATGTATTAGGAGGTCTATTTACTGGAATTGATACTCGGCA 1076
Query 1080 CATTGTTATGACAAGCAAGATGGTAGAGGAGTACACTGGGATGCAGACACAACCTCATAA 1139
|||||||||||||||||||||||| || |||||||| || ||||||||||| || |||||
Sbjct 1077 CATTGTTATGACAAGCAAGATGGTGGAAGAGTACACAGGAATGCAGACACAGCCACATAA 1136
Query 1140 GGCTATTGTAGGAGCGAATGCCTTTGCGCATGAAAGTGGAATTCACCAGGATGGAATGCT 1199
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 1137 GGCTATTGTAGGAGCGAATGCCTTTGCGCATGAAAGTGGTATCCATCAGGATGGAATGCT 1196
Query 1200 GAAACACAAGGGTACATATGAAATTATATGTCCCGAAGAAATTGGACTTGAACGATCAAA 1259
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1197 AAAACACAAGGGTACATATGAAATTATATGTCCCGAAGAGATTGGACTTGAACGATCAAA 1256
Query 1260 TGATGCTGGCATTGTCTTGGGGAAGCTTAGTGGGCGTCATGCGCTGAAAGACCGTTTGAC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TGATGCTGGCATTGTCTTGGGGAAGCTTAGTGGGCGTCATGCGCTGAAAGACCGTTTGAC 1316
Query 1320 TGAGCTTGGTTATCAATTAGATGATGAACAGCTAAGTACCATTTTCTGGCGCTTCAAAAC 1379
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1317 TGAGCTTGGTTATCAATTAGATGATGAACAGCTAAGTACCATTTTCTGGCGTTTCAAAAC 1376
Query 1380 CGTGGCTGAGCAGAAAAAGAGAGTTACTGATGCGGACATAATAGCTTTAGTATCTGATGA 1439
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1377 TGTGGCTGAGCAGAAAAAGAAAGTTACCGATGCGGACATAATAGCTTTAGTATCTGATGA 1436
Query 1440 AGTTTTCCAGCCAGAAGCCGTGTGGAAACTCCTGGACATTCAGATAACTTGTGGAACTCT 1499
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 AGTTTTTCAGCCAGAAGCCGTGTGGAAACTCCTGGACATTCAGATAACTTGTGGAACTCT 1496
Query 1500 CGGGCTTTCAACAGCAACTGTAAAACTTGCTGACGCTGATGGCAAAGAACATGTCGCTTG 1559
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1497 CGGGCTTTCAACAGCAACTGTAAAACTTGCTGACACTGATGGCAAAGAACATGTCGCTTG 1556
Query 1560 TTCTATTGGAACTGGGCCTGTGGATTCAGCTTACAAGGCAGTAGATCTTATCGTAAAGGA 1619
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1557 TTCCATTGGAACTGGGCCTGTCGATTCAGCTTACAAGGCAGTCGATCTTATCGTAAAGGA 1616
Query 1620 ACCGGCTACTCTGCTTGAGTACTCAATGAATGCAGTAACAGAAGGCATTGATGCCATCGC 1679
||| || || ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1617 ACCTGCGACCCTGCTTGAGTACTCAATGAATGCAGTAACAGAAGGGATCGATGCCATCGC 1676
Query 1680 AACCACAAGAGTTCTTATCCGTGGAAGCAACAAATACTCATCTACAAACGCAATAACTGG 1739
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1677 AACCACACGAGTTCTTATCCGTGGAAGCAACAAATACTCATCTACAAACGCAGTAACTGG 1736
Query 1740 TGAAGAGGTTCAAAGAACCTTTAGTGGAACTGGAGCAGGAATGGATATTGTGGTGTCAAG 1799
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 TGAAGAAGTTCAAAGGACCTTTAGTGGAACTGGAGCAGGAATGGATATTGTGGTGTCAAG 1796
Query 1800 CGTCAAAGCTTATGTTGGAGCTTTGAACAAAATGATGGACTTCAAAGAAAACTCCGCCAC 1859
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1797 CGTCAAAGCTTATGTAGGAGCCTTGAACAAAATGATGGACTTCAAAGAAAACTCCCCCAC 1856
Query 1860 AAAAATCCCTTCCCaaaaaaaCAGAGTCGCTGCCTGAATTAAAAATCTTTCCGGCAAATA 1919
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1857 AAAAATCCCTTCCCAAAAAAACAGAGTCCCTGCCTGAATTAAAAATCTTTCCGGCAAAAA 1916
Query 1920 CCAAAAAGTCAGACAGAAGTTAGGTTCTTTTATTTTCAAGTACATAGTTTGGTAATAACT 1979
||||| ||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1917 CCAAA--GTCAGGCAAAAGTTAGGTTCTTTTCTTTTCAAGTACATAGTTTGGTAATAACT 1974
Query 1980 GGAGTTTCGGAGTTTGCTTGTTGTTTATCGAA-GTTGCATGTCAAAAGAGTTTGGT 2034
| |||||| |||||||||| ||||||||| || |||||||||||||||||||||||
Sbjct 1975 GCAGTTTCAGAGTTTGCTTCTTGTTTATC-AATGTTGCATGTCAAAAGAGTTTGGT 2029
> Ahg476544 jgi|Araly1|476544|fgenesh2_kg.2__1674__AT1G74040.1
Length=2133
Score = 865 bits (468), Expect = 0.0
Identities = 725/851 (85%), Gaps = 9/851 (1%)
Strand=Plus/Plus
Query 163 CGTCTCTCATGCTCAATCTCAGATCCTTCTCCACTACCACCTCACACTCCTCGCCGTCCC 222
||| |||| |||||| |||| ||| ||||||| |||||| |||| |||||||||||
Sbjct 197 CGTATCTCGTGCTCACTCTCCGATTCTTCTCCTCTACCATCTCATTCTCCTCGCCGT--- 253
Query 223 CGTCCTGAATACATCCCCAACCGCATTTCCGATCCAAACTACGTCCGCGTCTTCGATACT 282
||||| || |||||||| || |||||||||||||| || ||||| || ||||||| ||
Sbjct 254 CGTCCCGATTACATCCCTAATCGCATTTCCGATCCCAATTACGTTCGAATCTTCGACACG 313
Query 283 ACTCTCCGTGACGGTGAACAATCTCCAGGAGCTACACTTACTTCCAAGGAAAAACTTGAC 342
|||||||| ||||||||||| ||||| ||||||||||| || ||||||||||| || ||
Sbjct 314 ACTCTCCGAGACGGTGAACAGTCTCCCGGAGCTACACTAACCTCCAAGGAAAAGCTCGAT 373
Query 343 ATCGCTCGTCAGCTAGCTAAACTTGGTGTTGACATCATCGAGGCTGGGTTTCCTGCTGCT 402
||||||||||| |||| || || || || ||||||||||| ||||| ||||||||||||
Sbjct 374 ATCGCTCGTCAATTAGCCAAGCTCGGAGTCGACATCATCGAAGCTGGATTTCCTGCTGCT 433
Query 403 TCCAAGGATGATTTTGAAGCGGTTAAGACTATAGCTGAAACAGTTGGAAACACTGTTGAT 462
|| || || ||||| ||||| || || || ||||| || || ||||| || || || ||
Sbjct 434 TCAAAAGACGATTTCGAAGCTGTGAAAACCATAGCAGAGACTGTTGGCAATACCGTCGAC 493
Query 463 GAGAATGGTTATGTTCCTGTTATCTGTGGACTCTCTAGATGCAATAAGAAGGATATTGAG 522
|| ||||||||||| ||||| |||||||| ||||| ||||| || |||||||||||||||
Sbjct 494 GAAAATGGTTATGTACCTGTAATCTGTGGCCTCTCGAGATGTAACAAGAAGGATATTGAG 553
Query 523 AGAGCTTGGGATGCTGTGAAATACGCTAAACGGCCTAGGATTCATACTTTTATAGCTACT 582
| |||||||| |||||||| ||||||||||| ||||| || ||||| ||||| || |||
Sbjct 554 ACTGCTTGGGAGGCTGTGAAGTACGCTAAACGTCCTAGAATCCATACGTTTATTGCCACT 613
Query 583 AGTGATATACATTTGGAGTATAAACTAAAGAAAACCAAAGCAGAGGTCATCGAAATCGCT 642
|||||||| |||||| ||||||| || ||||| | |||| ||| || || || |||||
Sbjct 614 AGTGATATTCATTTGAAGTATAAGCTGAAGAAGAGTAAAGAAGAAGTTATTGAGATCGCA 673
Query 643 AGGAGTATGGTTAGATTCGCGAGGAGCTTGGGGTGCGAAGATGTTGAGTTCAGTCCAGAA 702
|| | ||||||||||||||| || |||||| | || ||||||||||| || |||||||||
Sbjct 674 AGAAATATGGTTAGATTCGCCAGAAGCTTGAGATGTGAAGATGTTGAATTTAGTCCAGAA 733
Query 703 GATGCAGGAAGATCGGAGAGAGAGTACTTATACGAGATTCTTGGTGAAGTGATAAAAGCA 762
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GATGCCGGAAGATCGGAGAGAGAGTACTTATACGAGATTCTTGGTGAAGTGATAAAAGCT 793
Query 763 GGAGCAACAACTCTCAACATACCTGATACTGTTGGTATAACTTTGCCTAGTGAGTTTGGT 822
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 794 GGAGCAACAACTCTCAACATACCTGACACTGTTGGTATAACCTTGCCTAGTGAGTTTGGT 853
Query 823 CAACTGATTACTGAT-TTAAAGGCCAATACTCCG-GGGATTGAAAATGTTGTCATCTCAA 880
|| ||||| ||||| ||||| ||||||||| | ||||| |||||||| | | ||| |
Sbjct 854 CAGTTGATTGCTGATATTAAAA-CCAATACTC-GTGGGATCCAAAATGTTATAAGCTCTA 911
Query 881 CACATTGTCAGAATGATCTTGGACTCTCTACGGCCAACACTTTATCTGGGGCACATGCAG 940
|||||||||||||||||||||||||||| || ||||| ||||||||||| |||||| | |
Sbjct 912 CACATTGTCAGAATGATCTTGGACTCTCAACCGCCAATACTTTATCTGGTGCACATTCGG 971
Query 941 GTGCGAGGCA-GATGGAAGTGACGATCAATGGAATTGGTGAAAGAGCTGGAAACGCTTCA 999
| |||||||| | |||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 972 GCGCGAGGCAAG-TGGAAGTGACTATCAATGGAATTGGCGAAAGAGCTGGAAACGCTTCA 1030
Query 1000 CTGGAAGAGGT 1010
| ||||||||
Sbjct 1031 TTAGAAGAGGT 1041
Score = 758 bits (410), Expect = 0.0
Identities = 587/674 (87%), Gaps = 6/674 (1%)
Strand=Plus/Plus
Query 1189 GATGGAATGCTGAAACACAAGGGTACATATGAAATTATATGTCCCGAAGAAATTGGACTT 1248
|||||||||||||| ||||||||||| ||||||||||| | |||||||| |||||||||
Sbjct 1214 GATGGAATGCTGAAGCACAAGGGTACCTATGAAATTATGTCCCCCGAAGAGATTGGACTT 1273
Query 1249 GAACGATCAAATGATGCTGGCATTGTCTTGGGGAAGCTTAGTGGGCGTCATGCGCTGAAA 1308
| ||||||||||| ||||||||||| ||||||||||||||||||||||| || ||| |
Sbjct 1274 CAGCGATCAAATGAAGCTGGCATTGTGTTGGGGAAGCTTAGTGGGCGTCACGCATTGAGA 1333
Query 1309 GACCGTTTGACTGAGCTTGGTTATCAATTAGATGATGAACAGCTAAG-TACCATTTTCTG 1367
|||||||| | |||||| |||||| | ||||||| ||||||||| ||| |||| ||
Sbjct 1334 GACCGTTTAAATGAGCTCGGTTATGTCCTGGATGATGGACAGCTAAGCAACC-TTTTTTG 1392
Query 1368 GCGCTTCAAAACCGTGGCTGAGCAGAAAAAGAGAGTTACTGATGCGGACATAATAGCTTT 1427
||| |||||| | ||||| ||||| |||||||||||||| ||||| ||| ||||||||||
Sbjct 1393 GCGTTTCAAAGCTGTGGCAGAGCAAAAAAAGAGAGTTACCGATGCTGACTTAATAGCTTT 1452
Query 1428 AGTATCTGATGAAGT-TTTCCAGCCAGAAGCCGTGTGGAAACTCCTGGACATTCAGATAA 1486
||| ||||||||||| ||| |||||||| || |||||||||||||||||||| |||||||
Sbjct 1453 AGTCTCTGATGAAGTATTT-CAGCCAGAGGCTGTGTGGAAACTCCTGGACATGCAGATAA 1511
Query 1487 CTTGTGGAACTCTCGGGCTTTCAACAGCAACTGTAAAACTTGCTGACGCTGATGGCAAAG 1546
|||||||||||||||| || |||||| |||||||||||||||| ||| | ||||||||||
Sbjct 1512 CTTGTGGAACTCTCGGTCTCTCAACATCAACTGTAAAACTTGCCGACTCCGATGGCAAAG 1571
Query 1547 AACATGTCGCTTGTTCTATTGGAACTGGGCCTGTGGATTCAGCTTACAAGGCAGTAGATC 1606
| ||||| ||||||||| ||||||| || ||||| ||| |||||||||||||||| ||||
Sbjct 1572 AGCATGTAGCTTGTTCTGTTGGAACCGGACCTGTAGATGCAGCTTACAAGGCAGTTGATC 1631
Query 1607 TTATCGTAAAGGAACCGGCTACTCTGCTTGAGTACTCAATGAATGCAGTAACAGAAGGCA 1666
|||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1632 TTATCGTAAAGGAACCTGCGACTCTACTTGAGTACTCGATGAATGCAGTAACAGAAGGCA 1691
Query 1667 TTGATGCCATCGCAACCACAAGAGTTCTTATCCGTGGAAG-CAACAAATACTCATCTACA 1725
||||||| || ||||||||| | ||||| ||||| || || |||||| |||||||| |||
Sbjct 1692 TTGATGCTATTGCAACCACACGGGTTCTAATCCGCGG-AGACAACAACTACTCATCAACA 1750
Query 1726 AACGCAATAACTGGTGAAGAGGTTCAAAGAACCTTTAGTGGAACTGGAGCAGGAATGGAT 1785
||||| |||| |||||| ||| ||||||| ||||||||||| ||||||||||||||
Sbjct 1751 AACGCGGTAACCGGTGAATCTGTTGAAAGAACTTTTAGTGGAACCGGAGCAGGAATGGAC 1810
Query 1786 ATTGTGGTGTCAAGCGTCAAAGCTTATGTTGGAGCTTTGAACAAAATGATGGACTTCAAA 1845
||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1811 ATTGTGGTGTCGAGCGTTAAAGCTTATGTTGGAGCTTTGAACAAAATGTTGGGTTTCAAA 1870
Query 1846 GAAAACTCCGCCAC 1859
||| | ||| ||||
Sbjct 1871 GAACATTCCTCCAC 1884
Score = 195 bits (105), Expect = 2e-48
Identities = 127/138 (92%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 1010 TTGTGATGGCCATAAAATGCCGTGGAGATCATGTATTAGGAGGTCTATTTACCGGAATTG 1069
|||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 1077 TTGTCATGGCCATAAAATGCCGTGGAGATCATGTCTTAGGAGGCCTATTTACTGGAATTG 1136
Query 1070 ATACTCGGCACATTGTTATGACAAGCAAGATGGTAGAGGAGTACACTGGGATGCAGACAC 1129
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| || |
Sbjct 1137 ATACCCGGCACATTGTTATGACAAGCAAGATGGTTGAGGAGTACACTGGTATGCAAACGC 1196
Query 1130 AACCTCATAAGGCTATTG 1147
| || |||||||||||||
Sbjct 1197 AGCCCCATAAGGCTATTG 1214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77475558330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5