BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18510.1
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911666 jgi|Araly1|911666|Al_scaffold_0001_1920 1098 0.0
Ahg909031 jgi|Araly1|909031|Al_scaffold_0002_2112 243 2e-63
> Ahg911666 jgi|Araly1|911666|Al_scaffold_0001_1920
Length=747
Score = 1098 bits (594), Expect = 0.0
Identities = 677/718 (94%), Gaps = 2/718 (0%)
Strand=Plus/Plus
Query 1 ATGGCGACCATAATCCTTATATGCATAGGCTTAACAATGACGGGAACAGGTTTATATTAC 60
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 31 ATGGCGACCATAATCCTCATTTGCATAGGCTTAACCATGACGGGAACAGGTTTATATTAC 90
Query 61 AGAAAAACAGTCTCGA-AATGTATCCGAGAAACGGATGGCAGTTTCGTCGTCATTGGTTT 119
|| ||||||||||| | ||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 91 AGGAAAACAGTCTC-ACAATGTATCCGAGAAACGGATGGCAGTTTCGTTGTCCTTGGTTT 149
Query 120 GCTCTTGCTGGTGATTCCTCAGTTTGCTCTTTACGCAATCTGTTGTCACTCAAAACGTAT 179
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 150 GCTCTTGCTGGTGATTCCTCAGTTTGCTCTTTACGCAATCTGTTGTCGCTCCAAACGTAT 209
Query 180 GTTCACAATCTACATCTATGCAATGATATTCGTAAGCATTGTCCTTGGTGGCTACTCTTT 239
||||||||| ||||| ||||||||||||||||| || |||||||||||||||| |||||
Sbjct 210 GTTCACAATTTACATATATGCAATGATATTCGTCTGCGTTGTCCTTGGTGGCTATTCTTT 269
Query 240 AAAGTGTTTCATCTACAACACAACCTTTGGAATCGCCAAGAACCCGGCTGAGGAAAAGCG 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 270 AAAGTGTTTCATCTACAACACAACCTTTGGAATCGCCAAGAACCCTGCTGAGGAAAAGCG 329
Query 300 AACCGCCAAGCAATTGGTAGGCAGGCTAGTCCCTGAAAGTAAACTTGCAAAAGTCACGGA 359
||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||| ||
Sbjct 330 AACCGCCAAGCAACTGGTTGGCCGGCTAGTCCCTGAAAGTAAACTTGCAAGAGTCACCGA 389
Query 360 GTGCATCATTCATAACCATGACTGTAACTTCAATGCCAGCCAAAACAGCAATGTTTGGAG 419
|| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 390 CTGTATCATTTATAACCATGATTGTAACTTCAATGCCAGCCAAAACAGCAATGTTTGGAG 449
Query 420 GTATTGCTGCGCGCAACCAAGAGGATGTGGAGTGACGACAATGTTCGGGCAACCAGGAGA 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 450 GTATTGCTGCGCGCAACCGAGAGGATGTGGAGTGACGACAATGTTCGGGCAACCAGGAGA 509
Query 480 ATGGAGTTGGAAACATCAACACGTAGAGAACCATGTTCCGGAAGAATGTTCTTACGAATA 539
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 510 ATGGAGTTGGAAACATCAACATGTAGAGAACCATGTTCCTGAAGAATGTTCTTACGAATA 569
Query 540 CTGTCTCAGTTGCAGAGGTTGCCAGATGAGCATCTTAAAAGCCATTGTTCATCAATGGAA 599
|||||| |||||||||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 570 CTGTCTTAGTTGCAGAGGTTGCCAGCTGAGCATCTTAAAAGCCATTGTTGAACAATGGAA 629
Query 600 ATATCTCTCCATGTTCTCTTATCCTGCCCTCTTTCTCGTTTGTCTCAGCCTCGCCATTTC 659
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 630 ATATCTCTCCATGTTCTCTTATCCTTCCCTCTTTCTCGTTTGTCTCAGCCTCGCCATTGC 689
Query 660 CAGGTCCATTATGGATACTTTCGATGAACCTGATGATTATAGGGGCTATTATTCTTGA 717
||||||||||| || ||||| |||||||||||||||||||| ||||||||| |||||
Sbjct 690 CAGGTCCATTAAAGACACTTTTGATGAACCTGATGATTATAGAGGCTATTATACTTGA 747
> Ahg909031 jgi|Araly1|909031|Al_scaffold_0002_2112
Length=747
Score = 243 bits (131), Expect = 2e-63
Identities = 493/658 (75%), Gaps = 64/658 (10%)
Strand=Plus/Plus
Query 1 ATGGCGACCATAATCCTT-ATATGCATAGGCTTAACAATGACGGGAACAGGTTTATATTA 59
||| |||| ||||| ||| ||| | |||||| | ||||||| |||||||||| |||| |
Sbjct 31 ATGACGACAATAAT-CTTGATAAGTATAGGCCTCACAATGATGGGAACAGGTCTATACCA 89
Query 60 CAGAAA-AACAGTCTCGAAATGTATCCGAGAAA-CGGATGG-CAGTTTCGTCGTCA-TTG 115
| ||| |||||| || || |||||||||| | | || ||| ||| | || | | |
Sbjct 90 -AAAAACAACAGTGTCTTCTTGCATCCGAGAAACCTCA-GGCCAG-TTC-TTGTTACTCG 145
Query 116 GTTTG-CTCTTGCTGGTGATTCCTCAGTTTGCTCTTTACGCAATCTGTTGTCACTCAAAA 174
|| || |||| ||| ||||||||||| | | ||| |||| ||||||||| | ||| |||
Sbjct 146 GTCTGATTCTT-CTGTTGATTCCTCAGATAGGTCTATACGGAATCTGTTGCCGCTCCAAA 204
Query 175 CGTATGTTCACAATCTACATCTATGC-AATG-AT-ATTCGTAAG-CATTGTCCTTGGTGG 230
|| | || |||| || |||| | | | || ||| || | |||| || || ||
Sbjct 205 CGCCT-TT-TCAAT-TATTTCTA--CTACGGCATGATT-GT-GGTCATTATCATT-GTAT 256
Query 231 C-TACTCTT---T-AAAGTGTTTCATC-TACAACACAACCTTTGGAATCGCC-AAGAACC 283
| || | || | ||| ||||||| | |||||||| || ||||| ||| || |||||||
Sbjct 257 CTTATTATTCAATCAAA-TGTTTCA-CTTACAACACCACTTTTGGCATC-CCTAAGAACC 313
Query 284 CGGCTGAGGAAAAGCGAACC--GCCAAGCAATTGGTAGGCAGGCTAGTCCCTGAAAGTA- 340
| || |||| | || ||| ||| | || || | ||| |||| ||| || ||| |
Sbjct 314 CCGCCAAGGACCACCGCACCGTGCC-A-CAGTTACTCGGCCGGCTGGTCTCT--AAGGAG 369
Query 341 AACTTGC-A-AAAGTCACG--GAGTGCATCATTCATAACCATGACTGTAACTT-CAATGC 395
|| || | | || || | | ||| |||||||| |||||||||||||| || ||||||
Sbjct 370 AAGTT-CGAGAACGT-A-GTCTTGTGTATCATTCACAACCATGACTGTAA-TTACAATGC 425
Query 396 CAGCCAAAACAGCAATGTTTGGAGGTATTGCTGCGCGCAACC-AAGAGGATGT-GGAGTG 453
|||| |||||||||||||||||| ||||||||| || ||||| | |||||| |||
Sbjct 426 CAGCAAAAACAGCAATGTTTGGAAGTATTGCTGTGCACAACCGCCG-GGATGTGGGA-CC 483
Query 454 ACGACAATGTTCGGGCAA-CCAGGAGAATGGAGTTGGAAACATCAACACGTA-GAGAACC 511
| || ||||| | ||| ||||| || |||||||||||||| || | | | | |||||
Sbjct 484 ATTACGATGTT-TGACAAGCCAGGCGAGTGGAGTTGGAAACAACAGTATGAACG-GAACC 541
Query 512 ATGTTCCGGAAGAATGTTCTTACGAATACTGTCTCAG-TTGCAGAGGTTGCCAGA-TGAG 569
| ||||| ||||| |||||||| ||||| ||| | || ||||||||| ||||| | | ||
Sbjct 542 AAGTTCCAGAAGAGTGTTCTTATGAATATTGT-TTAGATTGCAGAGGCTGCCA-ACTAAG 599
Query 570 CATCTTAAAAGCCATTGTTCATCAATGGAAATATCTCTCCATGTTCT-CTTATCCTGC 626
||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||
Sbjct 600 CATCTTAAAAGCCATTGTTCATCAATGGAAATATCTCTCAATGTT-TGCTTACCCTGC 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26381058564
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5