BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18520.1 Length=1073 Score E Sequences producing significant alignments: (Bits) Value Ahg920785 jgi|Araly1|920785|scaffold_102066.1 1367 0.0 > Ahg920785 jgi|Araly1|920785|scaffold_102066.1 Length=859 Score = 1367 bits (740), Expect = 0.0 Identities = 820/859 (95%), Gaps = 3/859 (0%) Strand=Plus/Plus Query 100 GAGAAAGCAAATTTCCAAAAATGTTTCGAGTTAGCAATTTCATGGTTGGTCTAGCAAACA 159 ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 1 GAGAAAGAAAAACTCCAAAAATGTTTCGAGTTAGCAATTTCGTGGTTGGTCTAGCCAACA 60 Query 160 CATTGGTGATGTTAGTGGGCGCTTCGGCCATTGGTTATTCGATTTACATGTTCGTTCACC 219 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 61 CATTGGTGATGTTAGTGGGCGCATCTGCCATTGGTTATTCGATTTACATGTTCGTTCACC 120 Query 220 AAGGCGTCACTGATTGTGAATCTGCCATTCGGATACCACTTCTCACGACCGGACTCATCC 279 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 121 AAGGCGTCACCGATTGTGAATCTGCCATTCGGATACCACTTCTCACGACCGGGCTCATCC 180 Query 280 TCTTCTTGGTGTCTTTGCTCGGAGTGATTGGATCTTGTTTCAAGGAGAATTTGGCAATGG 339 ||||||||||||| || ||||||||||| ||||||||||||||||| ||| | ||||||| Sbjct 181 TCTTCTTGGTGTCGTTACTCGGAGTGATAGGATCTTGTTTCAAGGAAAATGTCGCAATGG 240 Query 340 TTTCCTACTTGATCATATTGTTTGGGGGCATTGTTGCATTGATGATTTTCTCCATATTTC 399 |||| |||||||||||||||||| |||||| ||||| |||||| ||||||||||||||| Sbjct 241 TTTCGTACTTGATCATATTGTTTTCGGGCATCGTTGCGTTGATGGTTTTCTCCATATTTC 300 Query 400 TCTTCTTTGTGACCAACAAAGGAGCCGGTCGTGTGGTGTCCGGTCGAGGGTATAAAGAGT 459 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCTTCTTTGTGACTAACAAAGGAGCCGGTCGTGTGGTGTCCGGTCGAGGGTATAAAGAGT 360 Query 460 ACCGGACGGTGGATTTCTCGACGTGGCTTAATGGGTTCGTTGGTGGGAAGAGATGGGTTG 519 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 361 ACCGGACGGTGGATTTCTCGACTTGGCTTAATGGGTTCGTTGGTGGGAAGAGATGGGTTG 420 Query 520 GGATAAGGTCTTGTTTGGCTGAGGCTAACGTTTGTGATGATTTGAGTGATGGTCGTGTTA 579 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 421 GGATAAGGTCTTGTTTGGCTGAGGCTAATGTTTGTGATGATTTGAGTGATGGTCGTGTTA 480 Query 580 GTCAGATCGCTGATGCGTTTTATCACAAGAACTTGTCTCCCATCCAGTCAGGTTGTTGTA 639 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 481 GTCAGATCGCTGATGCGTTTTATCATAAGAACTTGTCTCCCATCCAGTCAGGTTGTTGTA 540 Query 640 AGCCACCATCGGATTGCAACTTCGAGTTCAGAAACGCGACGTTCTGGATACCGCCGAGCA 699 ||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 541 AGCCACCGTCAGATTGCAACTTCGAGTTCAGAAACGCGACGTTCTGGATACCACCGACCA 600 Query 700 AAAACGAAACGGCAGTTGC-G--GAAAACGGGGACTGTGGTACGTGGAGCAACGTGCAAA 756 ||||||||||||| ||||| | || ||||||||||| ||| |||||||||||||||||| Sbjct 601 AAAACGAAACGGCGGTTGCAGCCGACAACGGGGACTGCGGTTCGTGGAGCAACGTGCAAA 660 Query 757 CAGAGTTATGTTTCAACTGCAACGCATGCAAAGCGGGTGTGTTAGCGAACATAAGAGAGA 816 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CGGAGTTATGTTTCAACTGCAACGCATGCAAAGCGGGTGTGTTAGCGAACATAAGAGAGA 720 Query 817 AGTGGAGGAATCTTCTTGTTTTCAACATTTGTCTCCTCATTCTCCTCATAACCGTCTATT 876 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 721 AGTGGAGGAATCTTCTTGTTTTCAACATTTGTCTCCTCATTCTCCTCATCACCGTCTATT 780 Query 877 CCTGCGGTTGCTGTGCTCGTCGTAACAATCGGACGGCTAGGAAAAGTGATTCTGTCTGAT 936 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CCTGCGGTTGCTGTGCTCGTCGTAACAATCGGACGGCTAGGAAAAGTGATTCTGTCTGAT 840 Query 937 CAACAACTCAAtttcagtt 955 ||||||||| ||||||||| Sbjct 841 CAACAACTCCATTTCAGTT 859 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39952817016 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5