BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18520.1
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920785 jgi|Araly1|920785|scaffold_102066.1 1367 0.0
> Ahg920785 jgi|Araly1|920785|scaffold_102066.1
Length=859
Score = 1367 bits (740), Expect = 0.0
Identities = 820/859 (95%), Gaps = 3/859 (0%)
Strand=Plus/Plus
Query 100 GAGAAAGCAAATTTCCAAAAATGTTTCGAGTTAGCAATTTCATGGTTGGTCTAGCAAACA 159
||||||| ||| |||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1 GAGAAAGAAAAACTCCAAAAATGTTTCGAGTTAGCAATTTCGTGGTTGGTCTAGCCAACA 60
Query 160 CATTGGTGATGTTAGTGGGCGCTTCGGCCATTGGTTATTCGATTTACATGTTCGTTCACC 219
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 61 CATTGGTGATGTTAGTGGGCGCATCTGCCATTGGTTATTCGATTTACATGTTCGTTCACC 120
Query 220 AAGGCGTCACTGATTGTGAATCTGCCATTCGGATACCACTTCTCACGACCGGACTCATCC 279
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 AAGGCGTCACCGATTGTGAATCTGCCATTCGGATACCACTTCTCACGACCGGGCTCATCC 180
Query 280 TCTTCTTGGTGTCTTTGCTCGGAGTGATTGGATCTTGTTTCAAGGAGAATTTGGCAATGG 339
||||||||||||| || ||||||||||| ||||||||||||||||| ||| | |||||||
Sbjct 181 TCTTCTTGGTGTCGTTACTCGGAGTGATAGGATCTTGTTTCAAGGAAAATGTCGCAATGG 240
Query 340 TTTCCTACTTGATCATATTGTTTGGGGGCATTGTTGCATTGATGATTTTCTCCATATTTC 399
|||| |||||||||||||||||| |||||| ||||| |||||| |||||||||||||||
Sbjct 241 TTTCGTACTTGATCATATTGTTTTCGGGCATCGTTGCGTTGATGGTTTTCTCCATATTTC 300
Query 400 TCTTCTTTGTGACCAACAAAGGAGCCGGTCGTGTGGTGTCCGGTCGAGGGTATAAAGAGT 459
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTTCTTTGTGACTAACAAAGGAGCCGGTCGTGTGGTGTCCGGTCGAGGGTATAAAGAGT 360
Query 460 ACCGGACGGTGGATTTCTCGACGTGGCTTAATGGGTTCGTTGGTGGGAAGAGATGGGTTG 519
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 ACCGGACGGTGGATTTCTCGACTTGGCTTAATGGGTTCGTTGGTGGGAAGAGATGGGTTG 420
Query 520 GGATAAGGTCTTGTTTGGCTGAGGCTAACGTTTGTGATGATTTGAGTGATGGTCGTGTTA 579
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 GGATAAGGTCTTGTTTGGCTGAGGCTAATGTTTGTGATGATTTGAGTGATGGTCGTGTTA 480
Query 580 GTCAGATCGCTGATGCGTTTTATCACAAGAACTTGTCTCCCATCCAGTCAGGTTGTTGTA 639
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 GTCAGATCGCTGATGCGTTTTATCATAAGAACTTGTCTCCCATCCAGTCAGGTTGTTGTA 540
Query 640 AGCCACCATCGGATTGCAACTTCGAGTTCAGAAACGCGACGTTCTGGATACCGCCGAGCA 699
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 541 AGCCACCGTCAGATTGCAACTTCGAGTTCAGAAACGCGACGTTCTGGATACCACCGACCA 600
Query 700 AAAACGAAACGGCAGTTGC-G--GAAAACGGGGACTGTGGTACGTGGAGCAACGTGCAAA 756
||||||||||||| ||||| | || ||||||||||| ||| ||||||||||||||||||
Sbjct 601 AAAACGAAACGGCGGTTGCAGCCGACAACGGGGACTGCGGTTCGTGGAGCAACGTGCAAA 660
Query 757 CAGAGTTATGTTTCAACTGCAACGCATGCAAAGCGGGTGTGTTAGCGAACATAAGAGAGA 816
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CGGAGTTATGTTTCAACTGCAACGCATGCAAAGCGGGTGTGTTAGCGAACATAAGAGAGA 720
Query 817 AGTGGAGGAATCTTCTTGTTTTCAACATTTGTCTCCTCATTCTCCTCATAACCGTCTATT 876
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 721 AGTGGAGGAATCTTCTTGTTTTCAACATTTGTCTCCTCATTCTCCTCATCACCGTCTATT 780
Query 877 CCTGCGGTTGCTGTGCTCGTCGTAACAATCGGACGGCTAGGAAAAGTGATTCTGTCTGAT 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCTGCGGTTGCTGTGCTCGTCGTAACAATCGGACGGCTAGGAAAAGTGATTCTGTCTGAT 840
Query 937 CAACAACTCAAtttcagtt 955
||||||||| |||||||||
Sbjct 841 CAACAACTCCATTTCAGTT 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39952817016
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5