BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18530.1
Length=474
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920786 jgi|Araly1|920786|scaffold_102067.1 704 0.0
> Ahg920786 jgi|Araly1|920786|scaffold_102067.1
Length=517
Score = 704 bits (381), Expect = 0.0
Identities = 444/475 (93%), Gaps = 2/475 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGATCAGATAAGACAACTT-AAAGACATTTTCGACCGGTTCGACATGGACGCAGA 59
||||||||||||||||| ||| || ||||||||||| |||||||| ||||||||||||||
Sbjct 22 ATGGAGGATCAGATAAGGCAA-TTAAAAGACATTTTTGACCGGTTTGACATGGACGCAGA 80
Query 60 CGGAAGCTTAACAATCTTAGAACTCGCGGCACTTCTCCGGTCACTCGGTCTCAAACCTTC 119
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 81 CGGAAGCTTAACAATCTTAGAACTCGCGGCGCTTCTCCGGTCACTCGGCCTCAAACCTTC 140
Query 120 CGGCGATCAAATCCATGTTTTGTTAGCTAGCATGGACTCAAACGGCAACGGTTTTGTCGA 179
||||| |||||||| |||||| |||||||||||||| |||||||||| |||||||||||
Sbjct 141 AGGCGACCAAATCCACGTTTTGCTAGCTAGCATGGACGCAAACGGCAATGGTTTTGTCGA 200
Query 180 ATTCGATGAGCTCGTTGGTACAATTCTTCCTGATCTTAACGAAGAGGTCCTAATCAATTC 239
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 201 ATTCGATGAGCTCGTTGGTACAATTCTTCCTGATCTGAACGAAGAGATCCTAATCAATTC 260
Query 240 CGAGCAATTACTCGAGATTTTCAAATCGTTCGATAGAGACGGTAACGGGTTCATAAGTGC 299
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 261 CGAGCAATTACTCGAGATTTTCAAATCATTCGATAGAGACGGTAACGGGTTCATCAGCGC 320
Query 300 GGCTGAGCTTGCAGGAGCAATGGCCAAGATGGGTCAACCATTAACGTATAAAGAATTAAC 359
||||||||||| ||||| ||||| ||||||||||||||||| || ||||||||| ||||
Sbjct 321 AGCTGAGCTTGCTGGAGCGATGGCGAAGATGGGTCAACCATTGACATATAAAGAACTAAC 380
Query 360 GGAGATGATCAAAGAAGCTGATACAAATGGTGATGGTGTTATAAGCTTTGGAGAGTTTGC 419
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 381 GGAGATGATCAAAGAAGCAGATACAAATGGTGACGGTGTTATAAGCTTTGGAGAATTTGC 440
Query 420 TTCAATTATGGCAAAATCTGCTGTTGATTACTTTGGATTAAAAATTAATTCGTGA 474
||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 441 TTCCATTATGGCAAAATCTGCTGTTGATTATTTTGGATTAAAAATTAATTCATGA 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17170015050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5